0.008853 0.000000 0.000000 0.000000 0.008853 0.000000 0.000000 0.000000 0.008853 0.00000 0.00000 0.00000 Milon, L. Meyer, P. Chiadmi, M. Munier, A. Johansson, M. Karlsson, A. Lascu, I. Capeau, J. Janin, J. Lacombe, M.-L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 112.960 112.960 112.960 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 275 14264 14272 10.1074/jbc.275.19.14264 10799505 The human nm23-H4 gene product is a mitochondrial nucleoside diphosphate kinase. 2000 10.2210/pdb1ehw/pdb pdb_00001ehw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.965 1.0 DW32 LURE 0.965 SYNCHROTRON LURE BEAMLINE DW32 N-TERMINUS TRUNCATED, N-TERMINAL HIS TAG 18209.717 NUCLEOSIDE DIPHOSPHATE KINASE 2.7.4.6 S34M, W35G 2 man polymer 96.063 SULFATE ION 3 syn non-polymer 18.015 water 83 nat water NDPK H4 no no MGSSHHHHHHSSGLVPRGSHMGTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPF YPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELV SW MGSSHHHHHHSSGLVPRGSHMGTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPF YPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELV SW A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli PLASMID PET-28A(+) NOVAGEN 1 3.30 62.69 VAPOR DIFFUSION, HANGING DROP 7.5 lithium sulfate, sodium chloride, HEPES, EDTA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Derived calculations Version format compliance Structure summary Data collection Database references Derived calculations 1 0 2000-05-17 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-02-01 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-02-23 REL SO4 SULFATE ION HOH water SO4 160 2 SO4 SO4 160 A SO4 164 2 SO4 SO4 164 A SO4 163 2 SO4 SO4 163 B WAT 500 3 HOH HOH 500 A WAT 502 3 HOH HOH 502 A WAT 503 3 HOH HOH 503 A WAT 504 3 HOH HOH 504 A WAT 505 3 HOH HOH 505 A WAT 506 3 HOH HOH 506 A WAT 507 3 HOH HOH 507 A WAT 508 3 HOH HOH 508 A WAT 509 3 HOH HOH 509 A WAT 510 3 HOH HOH 510 A WAT 511 3 HOH HOH 511 A WAT 513 3 HOH HOH 513 A WAT 514 3 HOH HOH 514 A WAT 518 3 HOH HOH 518 A WAT 520 3 HOH HOH 520 A WAT 522 3 HOH HOH 522 A WAT 525 3 HOH HOH 525 A WAT 527 3 HOH HOH 527 A WAT 530 3 HOH HOH 530 A WAT 531 3 HOH HOH 531 A WAT 532 3 HOH HOH 532 A WAT 533 3 HOH HOH 533 A WAT 534 3 HOH HOH 534 A WAT 536 3 HOH HOH 536 A WAT 541 3 HOH HOH 541 A WAT 542 3 HOH HOH 542 A WAT 543 3 HOH HOH 543 A WAT 552 3 HOH HOH 552 A WAT 553 3 HOH HOH 553 A WAT 554 3 HOH HOH 554 A WAT 556 3 HOH HOH 556 A WAT 564 3 HOH HOH 564 A WAT 566 3 HOH HOH 566 A WAT 571 3 HOH HOH 571 A WAT 577 3 HOH HOH 577 A WAT 579 3 HOH HOH 579 A WAT 580 3 HOH HOH 580 A WAT 581 3 HOH HOH 581 A WAT 590 3 HOH HOH 590 A WAT 593 3 HOH HOH 593 A WAT 598 3 HOH HOH 598 A WAT 602 3 HOH HOH 602 A WAT 606 3 HOH HOH 606 A WAT 612 3 HOH HOH 612 A WAT 615 3 HOH HOH 615 A WAT 622 3 HOH HOH 622 A WAT 624 3 HOH HOH 624 A WAT 501 3 HOH HOH 501 B WAT 515 3 HOH HOH 515 B WAT 516 3 HOH HOH 516 B WAT 517 3 HOH HOH 517 B WAT 519 3 HOH HOH 519 B WAT 521 3 HOH HOH 521 B WAT 523 3 HOH HOH 523 B WAT 524 3 HOH HOH 524 B WAT 526 3 HOH HOH 526 B WAT 528 3 HOH HOH 528 B WAT 529 3 HOH HOH 529 B WAT 538 3 HOH HOH 538 B WAT 539 3 HOH HOH 539 B WAT 540 3 HOH HOH 540 B WAT 545 3 HOH HOH 545 B WAT 548 3 HOH HOH 548 B WAT 549 3 HOH HOH 549 B WAT 550 3 HOH HOH 550 B WAT 551 3 HOH HOH 551 B WAT 557 3 HOH HOH 557 B WAT 559 3 HOH HOH 559 B WAT 560 3 HOH HOH 560 B WAT 561 3 HOH HOH 561 B WAT 562 3 HOH HOH 562 B WAT 567 3 HOH HOH 567 B WAT 569 3 HOH HOH 569 B WAT 573 3 HOH HOH 573 B WAT 574 3 HOH HOH 574 B WAT 575 3 HOH HOH 575 B WAT 596 3 HOH HOH 596 B WAT 600 3 HOH HOH 600 B WAT 607 3 HOH HOH 607 B WAT 616 3 HOH HOH 616 B WAT 623 3 HOH HOH 623 B WAT 627 3 HOH HOH 627 B WAT 628 3 HOH HOH 628 B n 1 -19 A n 2 -18 A n 3 -17 A n 4 -16 A n 5 -15 A n 6 -14 A n 7 -13 A n 8 -12 A n 9 -11 A n 10 -10 A n 11 -9 A n 12 -8 A n 13 -7 A n 14 -6 A n 15 -5 A n 16 -4 A n 17 -3 A n 18 -2 A n 19 -1 A ALA 0 n 20 HIS 0 A MET 1 n 21 MET 1 A GLY 2 n 22 GLY 2 A THR 3 n 23 THR 3 A ARG 4 n 24 ARG 4 A GLU 5 n 25 GLU 5 A ARG 6 n 26 ARG 6 A THR 7 n 27 THR 7 A LEU 8 n 28 LEU 8 A VAL 9 n 29 VAL 9 A ALA 10 n 30 ALA 10 A VAL 11 n 31 VAL 11 A LYS 12 n 32 LYS 12 A PRO 13 n 33 PRO 13 A ASP 14 n 34 ASP 14 A GLY 15 n 35 GLY 15 A VAL 16 n 36 VAL 16 A GLN 17 n 37 GLN 17 A ARG 18 n 38 ARG 18 A ARG 19 n 39 ARG 19 A LEU 20 n 40 LEU 20 A VAL 21 n 41 VAL 21 A GLY 22 n 42 GLY 22 A ASP 23 n 43 ASP 23 A VAL 24 n 44 VAL 24 A ILE 25 n 45 ILE 25 A GLN 26 n 46 GLN 26 A ARG 27 n 47 ARG 27 A PHE 28 n 48 PHE 28 A GLU 29 n 49 GLU 29 A ARG 30 n 50 ARG 30 A ARG 31 n 51 ARG 31 A GLY 32 n 52 GLY 32 A PHE 33 n 53 PHE 33 A THR 34 n 54 THR 34 A LEU 35 n 55 LEU 35 A VAL 36 n 56 VAL 36 A GLY 37 n 57 GLY 37 A MET 38 n 58 MET 38 A LYS 39 n 59 LYS 39 A MET 40 n 60 MET 40 A LEU 41 n 61 LEU 41 A GLN 42 n 62 GLN 42 A ALA 43 n 63 ALA 43 A PRO 44 n 64 PRO 44 A GLU 45 n 65 GLU 45 A SER 46 n 66 SER 46 A VAL 47 n 67 VAL 47 A LEU 48 n 68 LEU 48 A ALA 49 n 69 ALA 49 A GLU 50 n 70 GLU 50 A HIS 51 n 71 HIS 51 A TYR 52 n 72 TYR 52 A GLN 53 n 73 GLN 53 A ASP 54 n 74 ASP 54 A LEU 55 n 75 LEU 55 A ARG 56 n 76 ARG 56 A ARG 57 n 77 ARG 57 A LYS 58 n 78 LYS 58 A PRO 59 n 79 PRO 59 A PHE 60 n 80 PHE 60 A TYR 61 n 81 TYR 61 A PRO 62 n 82 PRO 62 A ALA 63 n 83 ALA 63 A LEU 64 n 84 LEU 64 A ILE 65 n 85 ILE 65 A ARG 66 n 86 ARG 66 A TYR 67 n 87 TYR 67 A MET 68 n 88 MET 68 A SER 69 n 89 SER 69 A SER 70 n 90 SER 70 A GLY 71 n 91 GLY 71 A PRO 72 n 92 PRO 72 A VAL 73 n 93 VAL 73 A VAL 74 n 94 VAL 74 A ALA 75 n 95 ALA 75 A MET 76 n 96 MET 76 A VAL 77 n 97 VAL 77 A TRP 78 n 98 TRP 78 A GLU 79 n 99 GLU 79 A GLY 80 n 100 GLY 80 A TYR 81 n 101 TYR 81 A ASN 82 n 102 ASN 82 A VAL 83 n 103 VAL 83 A VAL 84 n 104 VAL 84 A ARG 85 n 105 ARG 85 A ALA 86 n 106 ALA 86 A SER 87 n 107 SER 87 A ARG 88 n 108 ARG 88 A ALA 89 n 109 ALA 89 A MET 90 n 110 MET 90 A ILE 91 n 111 ILE 91 A GLY 92 n 112 GLY 92 A HIS 93 n 113 HIS 93 A THR 94 n 114 THR 94 A ASP 95 n 115 ASP 95 A SER 96 n 116 SER 96 A ALA 97 n 117 ALA 97 A GLU 98 n 118 GLU 98 A ALA 99 n 119 ALA 99 A ALA 100 n 120 ALA 100 A PRO 101 n 121 PRO 101 A GLY 102 n 122 GLY 102 A THR 103 n 123 THR 103 A ILE 104 n 124 ILE 104 A ARG 105 n 125 ARG 105 A GLY 106 n 126 GLY 106 A ASP 107 n 127 ASP 107 A PHE 108 n 128 PHE 108 A SER 109 n 129 SER 109 A VAL 110 n 130 VAL 110 A HIS 111 n 131 HIS 111 A ILE 112 n 132 ILE 112 A SER 113 n 133 SER 113 A ARG 114 n 134 ARG 114 A ASN 115 n 135 ASN 115 A VAL 116 n 136 VAL 116 A ILE 117 n 137 ILE 117 A HIS 118 n 138 HIS 118 A ALA 119 n 139 ALA 119 A SER 120 n 140 SER 120 A ASP 121 n 141 ASP 121 A SER 122 n 142 SER 122 A VAL 123 n 143 VAL 123 A GLU 124 n 144 GLU 124 A GLY 125 n 145 GLY 125 A ALA 126 n 146 ALA 126 A GLN 127 n 147 GLN 127 A ARG 128 n 148 ARG 128 A GLU 129 n 149 GLU 129 A ILE 130 n 150 ILE 130 A GLN 131 n 151 GLN 131 A LEU 132 n 152 LEU 132 A TRP 133 n 153 TRP 133 A PHE 134 n 154 PHE 134 A GLN 135 n 155 GLN 135 A SER 136 n 156 SER 136 A SER 137 n 157 SER 137 A GLU 138 n 158 GLU 138 A LEU 139 n 159 LEU 139 A VAL 140 n 160 VAL 140 A SER 141 n 161 SER 141 A TRP 142 n 162 TRP 142 A n 1 -19 B n 2 -18 B n 3 -17 B n 4 -16 B n 5 -15 B n 6 -14 B n 7 -13 B n 8 -12 B n 9 -11 B n 10 -10 B n 11 -9 B n 12 -8 B n 13 -7 B n 14 -6 B n 15 -5 B n 16 -4 B n 17 -3 B n 18 -2 B n 19 -1 B n 20 0 B ALA 1 n 21 MET 1 B GLY 2 n 22 GLY 2 B THR 3 n 23 THR 3 B ARG 4 n 24 ARG 4 B GLU 5 n 25 GLU 5 B ARG 6 n 26 ARG 6 B THR 7 n 27 THR 7 B LEU 8 n 28 LEU 8 B VAL 9 n 29 VAL 9 B ALA 10 n 30 ALA 10 B VAL 11 n 31 VAL 11 B LYS 12 n 32 LYS 12 B PRO 13 n 33 PRO 13 B ASP 14 n 34 ASP 14 B GLY 15 n 35 GLY 15 B VAL 16 n 36 VAL 16 B GLN 17 n 37 GLN 17 B ARG 18 n 38 ARG 18 B ARG 19 n 39 ARG 19 B LEU 20 n 40 LEU 20 B VAL 21 n 41 VAL 21 B GLY 22 n 42 GLY 22 B ASP 23 n 43 ASP 23 B VAL 24 n 44 VAL 24 B ILE 25 n 45 ILE 25 B GLN 26 n 46 GLN 26 B ARG 27 n 47 ARG 27 B PHE 28 n 48 PHE 28 B GLU 29 n 49 GLU 29 B ARG 30 n 50 ARG 30 B ARG 31 n 51 ARG 31 B GLY 32 n 52 GLY 32 B PHE 33 n 53 PHE 33 B THR 34 n 54 THR 34 B LEU 35 n 55 LEU 35 B VAL 36 n 56 VAL 36 B GLY 37 n 57 GLY 37 B MET 38 n 58 MET 38 B LYS 39 n 59 LYS 39 B MET 40 n 60 MET 40 B LEU 41 n 61 LEU 41 B GLN 42 n 62 GLN 42 B ALA 43 n 63 ALA 43 B PRO 44 n 64 PRO 44 B GLU 45 n 65 GLU 45 B SER 46 n 66 SER 46 B VAL 47 n 67 VAL 47 B LEU 48 n 68 LEU 48 B ALA 49 n 69 ALA 49 B GLU 50 n 70 GLU 50 B HIS 51 n 71 HIS 51 B TYR 52 n 72 TYR 52 B GLN 53 n 73 GLN 53 B ASP 54 n 74 ASP 54 B LEU 55 n 75 LEU 55 B ARG 56 n 76 ARG 56 B ARG 57 n 77 ARG 57 B LYS 58 n 78 LYS 58 B PRO 59 n 79 PRO 59 B PHE 60 n 80 PHE 60 B TYR 61 n 81 TYR 61 B PRO 62 n 82 PRO 62 B ALA 63 n 83 ALA 63 B LEU 64 n 84 LEU 64 B ILE 65 n 85 ILE 65 B ARG 66 n 86 ARG 66 B TYR 67 n 87 TYR 67 B MET 68 n 88 MET 68 B SER 69 n 89 SER 69 B SER 70 n 90 SER 70 B GLY 71 n 91 GLY 71 B PRO 72 n 92 PRO 72 B VAL 73 n 93 VAL 73 B VAL 74 n 94 VAL 74 B ALA 75 n 95 ALA 75 B MET 76 n 96 MET 76 B VAL 77 n 97 VAL 77 B TRP 78 n 98 TRP 78 B GLU 79 n 99 GLU 79 B GLY 80 n 100 GLY 80 B TYR 81 n 101 TYR 81 B ASN 82 n 102 ASN 82 B VAL 83 n 103 VAL 83 B VAL 84 n 104 VAL 84 B ARG 85 n 105 ARG 85 B ALA 86 n 106 ALA 86 B SER 87 n 107 SER 87 B ARG 88 n 108 ARG 88 B ALA 89 n 109 ALA 89 B MET 90 n 110 MET 90 B ILE 91 n 111 ILE 91 B GLY 92 n 112 GLY 92 B HIS 93 n 113 HIS 93 B THR 94 n 114 THR 94 B ASP 95 n 115 ASP 95 B SER 96 n 116 SER 96 B ALA 97 n 117 ALA 97 B GLU 98 n 118 GLU 98 B ALA 99 n 119 ALA 99 B ALA 100 n 120 ALA 100 B PRO 101 n 121 PRO 101 B GLY 102 n 122 GLY 102 B THR 103 n 123 THR 103 B ILE 104 n 124 ILE 104 B ARG 105 n 125 ARG 105 B GLY 106 n 126 GLY 106 B ASP 107 n 127 ASP 107 B PHE 108 n 128 PHE 108 B SER 109 n 129 SER 109 B VAL 110 n 130 VAL 110 B HIS 111 n 131 HIS 111 B ILE 112 n 132 ILE 112 B SER 113 n 133 SER 113 B ARG 114 n 134 ARG 114 B ASN 115 n 135 ASN 115 B VAL 116 n 136 VAL 116 B ILE 117 n 137 ILE 117 B HIS 118 n 138 HIS 118 B ALA 119 n 139 ALA 119 B SER 120 n 140 SER 120 B ASP 121 n 141 ASP 121 B SER 122 n 142 SER 122 B VAL 123 n 143 VAL 123 B GLU 124 n 144 GLU 124 B GLY 125 n 145 GLY 125 B ALA 126 n 146 ALA 126 B GLN 127 n 147 GLN 127 B ARG 128 n 148 ARG 128 B GLU 129 n 149 GLU 129 B ILE 130 n 150 ILE 130 B GLN 131 n 151 GLN 131 B LEU 132 n 152 LEU 132 B TRP 133 n 153 TRP 133 B PHE 134 n 154 PHE 134 B GLN 135 n 155 GLN 135 B SER 136 n 156 SER 136 B SER 137 n 157 SER 137 B GLU 138 n 158 GLU 138 B LEU 139 n 159 LEU 139 B VAL 140 n 160 VAL 140 B SER 141 n 161 SER 141 B TRP 142 n 162 TRP 142 B author_and_software_defined_assembly PISA,PQS 6 hexameric 13930 -173 35290 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7_674 -z+3/2,-x+2,y-1/2 crystal symmetry operation 169.4400000000 225.9200000000 -56.4800000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -1.0000000000 0.0000000000 0.0000000000 10_756 -y+2,z+1/2,-x+3/2 crystal symmetry operation 225.9200000000 56.4800000000 169.4400000000 A O LEU 41 A O LEU 61 A N VAL 73 A N VAL 93 A O TRP 78 A O TRP 98 A N THR 7 A N THR 27 A N ALA 10 A N ALA 30 A O HIS 118 A O HIS 138 B O LEU 41 B O LEU 61 B N VAL 73 B N VAL 93 B N TRP 78 B N TRP 98 B O THR 7 B O THR 27 B N ALA 10 B N ALA 30 B O HIS 118 B O HIS 138 1 A CG HIS 0 A CG HIS 20 1 Y 1 A ND1 HIS 0 A ND1 HIS 20 1 Y 1 A CD2 HIS 0 A CD2 HIS 20 1 Y 1 A CE1 HIS 0 A CE1 HIS 20 1 Y 1 A NE2 HIS 0 A NE2 HIS 20 1 Y 1 B CG MET 1 B CG MET 21 1 Y 1 B SD MET 1 B SD MET 21 1 Y 1 B CE MET 1 B CE MET 21 1 Y 1 A MET -19 A MET 1 1 Y 1 A GLY -18 A GLY 2 1 Y 1 A SER -17 A SER 3 1 Y 1 A SER -16 A SER 4 1 Y 1 A HIS -15 A HIS 5 1 Y 1 A HIS -14 A HIS 6 1 Y 1 A HIS -13 A HIS 7 1 Y 1 A HIS -12 A HIS 8 1 Y 1 A HIS -11 A HIS 9 1 Y 1 A HIS -10 A HIS 10 1 Y 1 A SER -9 A SER 11 1 Y 1 A SER -8 A SER 12 1 Y 1 A GLY -7 A GLY 13 1 Y 1 A LEU -6 A LEU 14 1 Y 1 A VAL -5 A VAL 15 1 Y 1 A PRO -4 A PRO 16 1 Y 1 A ARG -3 A ARG 17 1 Y 1 A GLY -2 A GLY 18 1 Y 1 A SER -1 A SER 19 1 Y 1 B MET -19 B MET 1 1 Y 1 B GLY -18 B GLY 2 1 Y 1 B SER -17 B SER 3 1 Y 1 B SER -16 B SER 4 1 Y 1 B HIS -15 B HIS 5 1 Y 1 B HIS -14 B HIS 6 1 Y 1 B HIS -13 B HIS 7 1 Y 1 B HIS -12 B HIS 8 1 Y 1 B HIS -11 B HIS 9 1 Y 1 B HIS -10 B HIS 10 1 Y 1 B SER -9 B SER 11 1 Y 1 B SER -8 B SER 12 1 Y 1 B GLY -7 B GLY 13 1 Y 1 B LEU -6 B LEU 14 1 Y 1 B VAL -5 B VAL 15 1 Y 1 B PRO -4 B PRO 16 1 Y 1 B ARG -3 B ARG 17 1 Y 1 B GLY -2 B GLY 18 1 Y 1 B SER -1 B SER 19 1 Y 1 B HIS 0 B HIS 20 1 Y 1 A ASP 54 -85.48 32.73 1 A VAL 116 62.98 -41.21 1 B SER 113 -61.05 -78.57 1 B VAL 116 59.18 -45.37 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 34.5 0.00 0.00 0.00 0.00 0.00 0.00 0.2290000 0.008 0.1840000 0.1840000 2.40 30.00 916 17939 5.1 94.3 RANDOM 3814914.74 0.00 1 RESTRAINED THROUGHOUT 0.0 FLAT MODEL 40.55 0.351 0.33 0.25 5.00 0.38 0.26 2.40 30.00 83 2352 15 0 2254 0.010 1.5 22.5 3.16 1.61 1.50 2.62 2.00 4.09 2.00 5.49 2.50 0.3230000 0.026 0.2440000 2.55 150 2835 6 5.0 95.2 29.5 2.4 30.0 1EHW 19054 1 phasing AMoRE refinement CNS 0.5 data reduction DENZO data scaling SCALEPACK HUMAN NUCLEOSIDE DIPHOSPHATE KINASE 4 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N The biological assembly is an hexamer constructed from the dimer formed by chain A and B generated by the three-fold A MET 1 A MET 21 HELX_P A ARG 4 A ARG 24 5 1 4 A LYS 12 A LYS 32 HELX_P A ARG 18 A ARG 38 1 2 7 A LEU 20 A LEU 40 HELX_P A ARG 31 A ARG 51 1 3 12 A PRO 44 A PRO 64 HELX_P A TYR 52 A TYR 72 1 4 9 A GLN 53 A GLN 73 HELX_P A ARG 56 A ARG 76 5 5 4 A PHE 60 A PHE 80 HELX_P A SER 69 A SER 89 1 6 10 A ASN 82 A ASN 102 HELX_P A GLY 92 A GLY 112 1 7 11 A ASP 95 A ASP 115 HELX_P A ALA 99 A ALA 119 5 8 5 A THR 103 A THR 123 HELX_P A SER 109 A SER 129 1 9 7 A SER 122 A SER 142 HELX_P A PHE 134 A PHE 154 1 10 13 A GLN 135 A GLN 155 HELX_P A LEU 139 A LEU 159 5 11 5 B LYS 12 B LYS 32 HELX_P B ARG 18 B ARG 38 1 12 7 B LEU 20 B LEU 40 HELX_P B GLY 32 B GLY 52 1 13 13 B PRO 44 B PRO 64 HELX_P B TYR 52 B TYR 72 1 14 9 B GLN 53 B GLN 73 HELX_P B ARG 56 B ARG 76 5 15 4 B PHE 60 B PHE 80 HELX_P B SER 69 B SER 89 1 16 10 B ASN 82 B ASN 102 HELX_P B GLY 92 B GLY 112 1 17 11 B ASP 95 B ASP 115 HELX_P B ALA 99 B ALA 119 5 18 5 B THR 103 B THR 123 HELX_P B SER 109 B SER 129 1 19 7 B SER 122 B SER 142 HELX_P B PHE 134 B PHE 154 1 20 13 B GLN 135 B GLN 155 HELX_P B LEU 139 B LEU 159 5 21 5 TRANSFERASE nucleoside diphosphate kinase, nm23, mitochondrial, killer-of-prune, TRANSFERASE NDKM_HUMAN UNP 1 33 O00746 PSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWE GYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ 14 175 1EHW -19 142 O00746 A 1 1 162 14 175 1EHW -19 142 O00746 B 1 1 162 1 ARG SEE REMARK 999 MET -19 1EHW A O00746 UNP 14 1 1 CYS SEE REMARK 999 GLY -18 1EHW A O00746 UNP 15 2 1 GLY SEE REMARK 999 SER -17 1EHW A O00746 UNP 16 3 1 PRO SEE REMARK 999 SER -16 1EHW A O00746 UNP 17 4 1 ARG SEE REMARK 999 HIS -15 1EHW A O00746 UNP 18 5 1 ALA SEE REMARK 999 HIS -14 1EHW A O00746 UNP 19 6 1 PRO SEE REMARK 999 HIS -13 1EHW A O00746 UNP 20 7 1 GLY SEE REMARK 999 HIS -12 1EHW A O00746 UNP 21 8 1 PRO SEE REMARK 999 HIS -11 1EHW A O00746 UNP 22 9 1 SER SEE REMARK 999 HIS -10 1EHW A O00746 UNP 23 10 1 LEU SEE REMARK 999 SER -9 1EHW A O00746 UNP 24 11 1 LEU SEE REMARK 999 SER -8 1EHW A O00746 UNP 25 12 1 VAL SEE REMARK 999 GLY -7 1EHW A O00746 UNP 26 13 1 ARG SEE REMARK 999 LEU -6 1EHW A O00746 UNP 27 14 1 HIS SEE REMARK 999 VAL -5 1EHW A O00746 UNP 28 15 1 GLY SEE REMARK 999 PRO -4 1EHW A O00746 UNP 29 16 1 SER SEE REMARK 999 ARG -3 1EHW A O00746 UNP 30 17 1 GLY SEE REMARK 999 GLY -2 1EHW A O00746 UNP 31 18 1 GLY SEE REMARK 999 SER -1 1EHW A O00746 UNP 32 19 1 PRO see remark 999 HIS 0 1EHW A O00746 UNP 33 20 1 SER see remark 999 MET 1 1EHW A O00746 UNP 34 21 1 TRP see remark 999 GLY 2 1EHW A O00746 UNP 35 22 2 ARG SEE REMARK 999 MET -19 1EHW B O00746 UNP 14 1 2 CYS SEE REMARK 999 GLY -18 1EHW B O00746 UNP 15 2 2 GLY SEE REMARK 999 SER -17 1EHW B O00746 UNP 16 3 2 PRO SEE REMARK 999 SER -16 1EHW B O00746 UNP 17 4 2 ARG SEE REMARK 999 HIS -15 1EHW B O00746 UNP 18 5 2 ALA SEE REMARK 999 HIS -14 1EHW B O00746 UNP 19 6 2 PRO SEE REMARK 999 HIS -13 1EHW B O00746 UNP 20 7 2 GLY SEE REMARK 999 HIS -12 1EHW B O00746 UNP 21 8 2 PRO SEE REMARK 999 HIS -11 1EHW B O00746 UNP 22 9 2 SER SEE REMARK 999 HIS -10 1EHW B O00746 UNP 23 10 2 LEU SEE REMARK 999 SER -9 1EHW B O00746 UNP 24 11 2 LEU SEE REMARK 999 SER -8 1EHW B O00746 UNP 25 12 2 VAL SEE REMARK 999 GLY -7 1EHW B O00746 UNP 26 13 2 ARG SEE REMARK 999 LEU -6 1EHW B O00746 UNP 27 14 2 HIS SEE REMARK 999 VAL -5 1EHW B O00746 UNP 28 15 2 GLY SEE REMARK 999 PRO -4 1EHW B O00746 UNP 29 16 2 SER SEE REMARK 999 ARG -3 1EHW B O00746 UNP 30 17 2 GLY SEE REMARK 999 GLY -2 1EHW B O00746 UNP 31 18 2 GLY SEE REMARK 999 SER -1 1EHW B O00746 UNP 32 19 2 PRO see remark 999 HIS 0 1EHW B O00746 UNP 33 20 2 SER see remark 999 MET 1 1EHW B O00746 UNP 34 21 2 TRP see remark 999 GLY 2 1EHW B O00746 UNP 35 22 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 34 A THR 54 A LEU 41 A LEU 61 A VAL 73 A VAL 93 A GLU 79 A GLU 99 A ARG 6 A ARG 26 A VAL 11 A VAL 31 A ILE 117 A ILE 137 A ALA 119 A ALA 139 B THR 34 B THR 54 B LEU 41 B LEU 61 B VAL 73 B VAL 93 B GLU 79 B GLU 99 B ARG 6 B ARG 26 B VAL 11 B VAL 31 B ILE 117 B ILE 137 B ALA 119 B ALA 139 BINDING SITE FOR RESIDUE SO4 A 160 A SO4 160 Software 9 BINDING SITE FOR RESIDUE SO4 B 163 B SO4 163 Software 5 BINDING SITE FOR RESIDUE SO4 A 164 A SO4 164 Software 4 A HIS 111 A HIS 131 9 1_555 A ILE 112 A ILE 132 9 1_555 A SER 113 A SER 133 9 1_555 A ARG 114 A ARG 134 9 1_555 A HOH 507 F HOH 9 1_555 A HOH 510 F HOH 9 1_555 B PRO 59 B PRO 79 9 3_755 B PHE 60 B PHE 80 9 3_755 B PRO 62 B PRO 82 9 3_755 B ARG 88 B ARG 108 5 1_555 B THR 94 B THR 114 5 1_555 B ARG 105 B ARG 125 5 1_555 B HOH 519 G HOH 5 1_555 B HOH 528 G HOH 5 1_555 A ARG 88 A ARG 108 4 1_555 A THR 94 A THR 114 4 1_555 A ARG 105 A ARG 125 4 1_555 A HOH 525 F HOH 4 1_555 198 P 21 3