0.018188
0.000000
0.000063
0.000000
0.029950
0.000000
0.000000
0.000000
0.016150
0.00000
0.00000
0.00000
Shi, H.
Moore, P.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
90.20
90.00
54.981
33.389
61.921
C11 H16 N5 O7 P
361.248
n
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O8 P
377.247
n
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H16 N3 O8 P
337.223
n
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H15 N2 O9 P
338.208
n
5-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C11 H18 N5 O8 P
379.263
n
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H15 N2 O9 P
326.197
n
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
C12 H18 N5 O8 P
391.274
n
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C10 H16 N3 O8 P
337.223
n
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O8 P
377.247
n
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C21 H29 N6 O12 P
588.462
n
4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID METHYL ESTER
MODIFIED GUANOSINE-5'-PHOSPHATE
RNA linking
UK
RNA
RNARFU
2122
1355-8382
6
1091
1105
10.1017/S1355838200000364
10943889
The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited
2000
10.2210/pdb1ehz/pdb
pdb_00001ehz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
80
1
CCD
SINGLE WAVELENGTH
M
x-ray
1
0.913
1.0
A1
CHESS
0.913
SYNCHROTRON
CHESS BEAMLINE A1
24890.121
TRANSFER RNA (PHE)
1
nat
polymer
24.305
MAGNESIUM ION
6
syn
non-polymer
54.938
MANGANESE (II) ION
3
syn
non-polymer
18.015
water
160
nat
water
no
yes
GCGGAUUUA(2MG)CUCAG(H2U)(H2U)GGGAGAGC(M2G)CCAGA(OMC)U(OMG)AA(YYG)A(PSU)(5MC)UGGA
G(7MG)UC(5MC)UGUG(5MU)(PSU)CG(1MA)UCCACAGAAUUCGCACCA
GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
yeast
abundant form, purified from the natural mixture by electrophoresis
sample
4932
Saccharomyces cerevisiae
1
2.28
46.13
VAPOR DIFFUSION, HANGING DROP
6.5
isopropanol, MgCl2, spermine, cacodylate, pH 6 to 7, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
MgCl2
1
spermine
1
cacodylate
1
isopropanol
1
isopropanol
2
-6.298
1
19
A
1
A
72
-0.698
A_G1:C72_A
1
-9.830
-0.553
-0.429
-0.280
-7.959
1
19
A
2
A
71
-2.672
A_C2:G71_A
2
-10.304
0.128
0.027
-0.078
-4.802
1
19
A
3
A
70
0.281
A_G3:C70_A
3
-11.890
-0.085
0.082
-0.113
11.053
28
A
4
A
69
-1.554
A_G4:U69_A
4
-9.694
-2.556
0.458
-0.513
3.411
1
20
A
5
A
68
5.568
A_A5:U68_A
5
-17.395
0.103
0.065
-0.019
-0.631
1
20
A
6
A
67
5.504
A_U6:A67_A
6
-23.712
0.063
-0.080
-0.127
-3.188
1
20
A
7
A
66
0.303
A_U7:A66_A
7
-2.376
-0.006
0.018
-0.197
1.609
1
19
A
49
A
65
0.871
A_5MC49:G65_A
8
-11.935
0.274
0.040
0.021
-1.832
1
20
A
50
A
64
-2.402
A_U50:A64_A
9
-6.147
-0.132
-0.106
-0.165
-6.201
1
19
A
51
A
63
2.268
A_G51:C63_A
10
-13.769
-0.140
-0.264
-0.172
-1.472
1
20
A
52
A
62
2.546
A_U52:A62_A
11
-10.842
-0.267
0.030
-0.093
-10.859
1
19
A
53
A
61
0.242
A_G53:C61_A
12
-9.916
-0.279
-0.139
-0.146
-5.066
4
24
A
54
A
58
-103.975
A_5MU54:1MA58_A
13
6.430
4.209
0.237
-1.633
20.117
2
A
55
A
18
-90.538
A_PSU55:G18_A
14
2.802
0.684
0.205
-5.633
4.744
2
22
A
15
A
48
155.684
A_G15:C48_A
15
-0.971
0.120
0.169
3.745
-4.615
4
24
A
8
A
14
-103.091
A_U8:A14_A
16
12.117
4.137
0.766
-1.910
-5.908
1
19
A
22
A
13
0.477
A_G22:C13_A
17
1.200
-0.251
0.004
-0.147
10.594
1
20
A
23
A
12
-5.875
A_A23:U12_A
18
-4.257
0.143
0.191
-0.013
6.245
1
19
A
24
A
11
2.131
A_G24:C11_A
19
-17.055
-0.234
0.234
-0.185
9.560
1
19
A
25
A
10
-0.800
A_C25:2MG10_A
20
-12.565
0.167
-0.278
-0.115
22.176
8
A
26
A
44
-17.601
A_M2G26:A44_A
21
-34.084
-0.314
-0.301
1.433
6.667
1
19
A
27
A
43
-4.272
A_C27:G43_A
22
-17.676
0.165
0.368
-0.122
2.465
1
19
A
28
A
42
2.457
A_C28:G42_A
23
-10.657
0.149
0.370
-0.015
2.362
1
20
A
29
A
41
2.555
A_A29:U41_A
24
-9.480
0.359
-0.010
-0.059
-15.015
1
19
A
30
A
40
7.481
A_G30:5MC40_A
25
-18.344
-0.428
-0.044
0.114
-5.434
A
32
A
38
16.624
A_OMC32:A38_A
26
9.640
6.787
0.712
-1.660
-25.996
1
19
A
19
A
56
0.728
A_G19:C56_A
27
-24.904
-0.456
-0.074
-0.052
2.873
36.028
A
A
1
2
12.441
A
A
72
71
3.288
7.629
-0.385
-1.786
AA_G1C2:G71C72_AA
1
-3.431
5.595
35.075
-3.922
0.157
2.690
31.880
A
A
2
3
16.826
A
A
71
70
3.144
9.118
0.046
-1.178
AA_C2G3:C70G71_AA
2
0.919
-1.695
30.567
-3.659
0.069
1.923
24.099
A
A
3
4
17.227
A
A
70
69
2.634
7.037
0.385
-1.600
AA_G3G4:U69C70_AA
3
-5.031
12.316
22.515
-5.457
-2.083
3.110
45.071
A
A
4
5
8.900
A
A
69
68
3.323
6.798
0.035
-1.247
AA_G4A5:U68U69_AA
4
0.912
-1.194
44.573
-2.231
0.035
2.627
33.805
A
A
5
6
16.936
A
A
68
67
3.192
9.710
0.389
-1.632
AA_A5U6:A67U68_AA
5
2.243
-3.913
32.343
-4.235
-0.339
2.766
31.866
A
A
6
7
19.004
A
A
67
66
3.349
10.254
-0.513
-1.377
AA_U6U7:A66A67_AA
6
-1.467
2.719
30.177
-4.305
0.678
3.036
34.648
A
A
7
49
4.040
A
A
66
65
3.210
2.403
-0.290
-2.188
AA_U75MC49:G65A66_AA
7
1.858
-3.123
34.519
-4.027
0.760
2.722
28.720
A
A
49
50
13.352
A
A
65
64
3.271
6.567
-0.967
-2.115
AA_5MC49U50:A64G65_AA
8
-0.279
0.567
27.973
-5.636
1.891
2.999
32.727
A
A
50
51
15.340
A
A
64
63
3.457
8.545
0.239
-1.381
AA_U50G51:C63A64_AA
9
1.618
-2.905
31.580
-3.934
-0.143
2.835
30.854
A
A
51
52
9.717
A
A
63
62
3.066
5.142
0.129
-1.064
AA_G51U52:A62C63_AA
10
-2.262
4.274
30.350
-2.909
-0.642
3.276
32.830
A
A
52
53
8.623
A
A
62
61
3.547
4.854
0.724
-1.884
AA_U52G53:C61A62_AA
11
2.012
-3.574
32.418
-4.207
-0.919
3.311
90.945
A
A
53
54
-1.178
A
A
61
58
3.269
-1.680
-2.102
-2.661
AA_G535MU54:1MA58C61_AA
12
-0.217
0.152
90.933
-1.833
1.470
3.431
43.169
A
A
54
55
4.226
A
A
58
18
3.243
3.090
2.310
-2.425
AA_5MU54PSU55:G181MA58_AA
13
8.102
-11.081
42.330
-3.609
-2.319
-2.703
177.994
A
A
15
8
45.465
A
A
48
14
-3.372
90.809
3.948
-1.455
AA_G15U8:A14C48_AA
14
145.058
-72.626
153.806
-0.543
-2.269
3.294
57.178
A
A
8
22
-8.030
A
A
14
13
3.261
-7.665
2.359
-0.337
AA_U8G22:C13A14_AA
15
0.439
-0.460
56.703
0.071
-2.441
2.992
28.189
A
A
22
23
3.188
A
A
13
12
2.933
1.549
-1.759
-1.959
AA_G22A23:U12C13_AA
16
-3.032
6.240
27.987
-4.352
2.968
2.970
31.459
A
A
23
24
11.983
A
A
12
11
3.298
6.453
0.374
-1.252
AA_A23G24:C11U12_AA
17
-0.826
1.534
30.796
-3.478
-0.840
2.761
38.674
A
A
24
25
10.768
A
A
11
10
2.991
7.077
0.844
-1.480
AA_G24C25:2MG10C11_AA
18
4.642
-7.062
37.771
-3.009
-0.766
2.034
62.167
A
A
25
26
13.278
A
A
10
44
3.478
13.484
2.982
-2.782
AA_C25M2G26:A442MG10_AA
19
-16.505
16.254
58.746
-3.235
-3.550
2.956
39.265
A
A
26
27
11.893
A
A
44
43
3.431
7.910
0.647
-1.400
AA_M2G26C27:G43A44_AA
20
-6.184
9.298
38.009
-3.019
-1.695
3.170
38.634
A
A
27
28
5.622
A
A
43
42
3.322
3.714
0.282
-1.477
AA_C27C28:G42G43_AA
21
-0.164
0.248
38.462
-2.687
-0.447
2.639
28.730
A
A
28
29
12.548
A
A
42
41
3.125
6.175
-0.031
-1.932
AA_C28A29:U41G42_AA
22
1.865
-3.789
28.011
-5.133
0.436
3.129
31.278
A
A
29
30
12.922
A
A
41
40
3.624
6.903
0.624
-2.092
AA_A29G30:5MC40U41_AA
23
2.868
-5.369
30.393
-5.249
-0.588
5.742
87.785
A
A
30
32
11.639
A
A
40
38
6.052
16.073
0.742
-1.861
AA_G30OMC32:A385MC40_AA
24
5.545
-4.015
86.454
-1.970
-0.318
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Source and taxonomy
Database references
Derived calculations
1
0
2000-10-02
1
1
2008-04-27
1
2
2011-07-13
1
3
2011-12-21
1
4
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
contains the same tRNA
contains the same tRNA
contains the same tRNA
contains the same tRNA
N
NDB
Y
NDB
2000-02-23
REL
REL
MG
MAGNESIUM ION
MN
MANGANESE (II) ION
HOH
water
MG
590
2
MG
MG
590
A
O4M
530
3
MN
MN
530
A
MO5
510
2
MG
MG
510
A
MN5
520
3
MN
MN
520
A
MO3
540
2
MG
MG
540
A
MO6
560
2
MG
MG
560
A
MO6
570
2
MG
MG
570
A
MO1
580
2
MG
MG
580
A
MN5
550
3
MN
MN
550
A
HOH
101
4
HOH
HOH
101
A
HOH
102
4
HOH
HOH
102
A
HOH
103
4
HOH
HOH
103
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
106
4
HOH
HOH
106
A
HOH
107
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
109
4
HOH
HOH
109
A
HOH
110
4
HOH
HOH
110
A
HOH
111
4
HOH
HOH
111
A
HOH
112
4
HOH
HOH
112
A
HOH
113
4
HOH
HOH
113
A
HOH
114
4
HOH
HOH
114
A
HOH
115
4
HOH
HOH
115
A
HOH
116
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
119
4
HOH
HOH
119
A
HOH
120
4
HOH
HOH
120
A
HOH
121
4
HOH
HOH
121
A
HOH
123
4
HOH
HOH
123
A
HOH
124
4
HOH
HOH
124
A
HOH
125
4
HOH
HOH
125
A
HOH
126
4
HOH
HOH
126
A
HOH
127
4
HOH
HOH
127
A
HOH
128
4
HOH
HOH
128
A
HOH
129
4
HOH
HOH
129
A
HOH
130
4
HOH
HOH
130
A
HOH
131
4
HOH
HOH
131
A
HOH
132
4
HOH
HOH
132
A
HOH
133
4
HOH
HOH
133
A
HOH
134
4
HOH
HOH
134
A
HOH
135
4
HOH
HOH
135
A
HOH
136
4
HOH
HOH
136
A
HOH
137
4
HOH
HOH
137
A
HOH
138
4
HOH
HOH
138
A
HOH
139
4
HOH
HOH
139
A
HOH
140
4
HOH
HOH
140
A
HOH
141
4
HOH
HOH
141
A
HOH
142
4
HOH
HOH
142
A
HOH
143
4
HOH
HOH
143
A
HOH
144
4
HOH
HOH
144
A
HOH
145
4
HOH
HOH
145
A
HOH
146
4
HOH
HOH
146
A
HOH
147
4
HOH
HOH
147
A
HOH
148
4
HOH
HOH
148
A
HOH
149
4
HOH
HOH
149
A
HOH
150
4
HOH
HOH
150
A
HOH
152
4
HOH
HOH
152
A
HOH
153
4
HOH
HOH
153
A
HOH
155
4
HOH
HOH
155
A
HOH
156
4
HOH
HOH
156
A
HOH
157
4
HOH
HOH
157
A
HOH
158
4
HOH
HOH
158
A
HOH
159
4
HOH
HOH
159
A
HOH
160
4
HOH
HOH
160
A
HOH
161
4
HOH
HOH
161
A
HOH
162
4
HOH
HOH
162
A
HOH
163
4
HOH
HOH
163
A
HOH
164
4
HOH
HOH
164
A
HOH
166
4
HOH
HOH
166
A
HOH
167
4
HOH
HOH
167
A
HOH
168
4
HOH
HOH
168
A
HOH
170
4
HOH
HOH
170
A
HOH
171
4
HOH
HOH
171
A
HOH
172
4
HOH
HOH
172
A
HOH
173
4
HOH
HOH
173
A
HOH
174
4
HOH
HOH
174
A
HOH
175
4
HOH
HOH
175
A
HOH
178
4
HOH
HOH
178
A
HOH
181
4
HOH
HOH
181
A
HOH
183
4
HOH
HOH
183
A
HOH
184
4
HOH
HOH
184
A
HOH
185
4
HOH
HOH
185
A
HOH
186
4
HOH
HOH
186
A
HOH
189
4
HOH
HOH
189
A
HOH
191
4
HOH
HOH
191
A
HOH
195
4
HOH
HOH
195
A
HOH
196
4
HOH
HOH
196
A
HOH
197
4
HOH
HOH
197
A
HOH
200
4
HOH
HOH
200
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
208
4
HOH
HOH
208
A
HOH
210
4
HOH
HOH
210
A
HOH
214
4
HOH
HOH
214
A
HOH
219
4
HOH
HOH
219
A
HOH
222
4
HOH
HOH
222
A
HOH
223
4
HOH
HOH
223
A
HOH
226
4
HOH
HOH
226
A
HOH
228
4
HOH
HOH
228
A
HOH
230
4
HOH
HOH
230
A
HOH
231
4
HOH
HOH
231
A
HOH
233
4
HOH
HOH
233
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
596
4
HOH
HOH
596
A
HOH
598
4
HOH
HOH
598
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
608
4
HOH
HOH
608
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
616
4
HOH
HOH
616
A
HOH
618
4
HOH
HOH
618
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
633
4
HOH
HOH
633
A
HOH
635
4
HOH
HOH
635
A
HOH
644
4
HOH
HOH
644
A
HOH
648
4
HOH
HOH
648
A
HOH
657
4
HOH
HOH
657
A
HOH
662
4
HOH
HOH
662
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
675
4
HOH
HOH
675
A
HOH
688
4
HOH
HOH
688
A
HOH
690
4
HOH
HOH
690
A
HOH
693
4
HOH
HOH
693
A
HOH
707
4
HOH
HOH
707
A
O4M
530
4
HOH
HOH
708
A
O4M
530
4
HOH
HOH
709
A
O4M
530
4
HOH
HOH
710
A
O4M
530
4
HOH
HOH
711
A
MO5
510
4
HOH
HOH
712
A
MO5
510
4
HOH
HOH
713
A
MO5
510
4
HOH
HOH
714
A
MO5
510
4
HOH
HOH
715
A
MO5
510
4
HOH
HOH
716
A
MN5
520
4
HOH
HOH
717
A
MN5
520
4
HOH
HOH
718
A
MN5
520
4
HOH
HOH
719
A
MN5
520
4
HOH
HOH
720
A
MN5
520
4
HOH
HOH
721
A
MO3
540
4
HOH
HOH
722
A
MO3
540
4
HOH
HOH
723
A
MO3
540
4
HOH
HOH
724
A
MO6
560
4
HOH
HOH
725
A
MO6
560
4
HOH
HOH
726
A
MO6
560
4
HOH
HOH
727
A
MO6
560
4
HOH
HOH
728
A
MO6
560
4
HOH
HOH
729
A
MO6
560
4
HOH
HOH
730
A
MO6
570
4
HOH
HOH
731
A
MO6
570
4
HOH
HOH
732
A
MO6
570
4
HOH
HOH
733
A
MO6
570
4
HOH
HOH
734
A
MO6
570
4
HOH
HOH
735
A
MO6
570
4
HOH
HOH
736
A
MO1
580
4
HOH
HOH
737
A
MN5
550
4
HOH
HOH
738
A
MN5
550
4
HOH
HOH
739
A
MN5
550
4
HOH
HOH
740
A
MN5
550
4
HOH
HOH
741
A
MN5
550
4
HOH
HOH
742
A
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
G
4
n
4
G
4
A
A
5
n
5
A
5
A
U
6
n
6
U
6
A
U
7
n
7
U
7
A
U
8
n
8
U
8
A
A
9
n
9
A
9
A
2MG
10
n
10
2MG
10
A
C
11
n
11
C
11
A
U
12
n
12
U
12
A
C
13
n
13
C
13
A
A
14
n
14
A
14
A
G
15
n
15
G
15
A
H2U
16
n
16
H2U
16
A
H2U
17
n
17
H2U
17
A
G
18
n
18
G
18
A
G
19
n
19
G
19
A
G
20
n
20
G
20
A
A
21
n
21
A
21
A
G
22
n
22
G
22
A
A
23
n
23
A
23
A
G
24
n
24
G
24
A
C
25
n
25
C
25
A
M2G
26
n
26
M2G
26
A
C
27
n
27
C
27
A
C
28
n
28
C
28
A
A
29
n
29
A
29
A
G
30
n
30
G
30
A
A
31
n
31
A
31
A
OMC
32
n
32
OMC
32
A
U
33
n
33
U
33
A
OMG
34
n
34
OMG
34
A
A
35
n
35
A
35
A
A
36
n
36
A
36
A
YG
37
n
37
YYG
37
A
A
38
n
38
A
38
A
PSU
39
n
39
PSU
39
A
5MC
40
n
40
5MC
40
A
U
41
n
41
U
41
A
G
42
n
42
G
42
A
G
43
n
43
G
43
A
A
44
n
44
A
44
A
G
45
n
45
G
45
A
7MG
46
n
46
7MG
46
A
U
47
n
47
U
47
A
C
48
n
48
C
48
A
5MC
49
n
49
5MC
49
A
U
50
n
50
U
50
A
G
51
n
51
G
51
A
U
52
n
52
U
52
A
G
53
n
53
G
53
A
5MU
54
n
54
5MU
54
A
PSU
55
n
55
PSU
55
A
C
56
n
56
C
56
A
G
57
n
57
G
57
A
1MA
58
n
58
1MA
58
A
U
59
n
59
U
59
A
C
60
n
60
C
60
A
C
61
n
61
C
61
A
A
62
n
62
A
62
A
C
63
n
63
C
63
A
A
64
n
64
A
64
A
G
65
n
65
G
65
A
A
66
n
66
A
66
A
A
67
n
67
A
67
A
U
68
n
68
U
68
A
U
69
n
69
U
69
A
C
70
n
70
C
70
A
G
71
n
71
G
71
A
C
72
n
72
C
72
A
A
73
n
73
A
73
A
C
74
n
74
C
74
A
C
75
n
75
C
75
A
A
76
n
76
A
76
A
author_defined_assembly
1
monomeric
A
G
1
A
N7
G
1
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
717
K
O
HOH
1_555
96.0
A
G
1
A
N7
G
1
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
718
K
O
HOH
1_555
84.1
A
HOH
717
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
718
K
O
HOH
1_555
180.0
A
G
1
A
N7
G
1
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
719
K
O
HOH
1_555
80.4
A
HOH
717
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
719
K
O
HOH
1_555
90.0
A
HOH
718
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
719
K
O
HOH
1_555
90.0
A
G
1
A
N7
G
1
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
720
K
O
HOH
1_555
99.6
A
HOH
717
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
720
K
O
HOH
1_555
90.0
A
HOH
718
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
720
K
O
HOH
1_555
90.0
A
HOH
719
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
720
K
O
HOH
1_555
180.0
A
G
1
A
N7
G
1
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
721
K
O
HOH
1_555
168.7
A
HOH
717
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
721
K
O
HOH
1_555
89.9
A
HOH
718
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
721
K
O
HOH
1_555
90.0
A
HOH
719
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
721
K
O
HOH
1_555
90.0
A
HOH
720
K
O
HOH
1_555
A
MN
520
E
MN
MN
1_555
A
HOH
721
K
O
HOH
1_555
90.0
A
U
7
A
OP1
U
7
1_555
A
MG
580
I
MG
MG
1_555
A
A
14
A
OP2
A
14
1_555
145.5
A
U
7
A
OP1
U
7
1_555
A
MG
580
I
MG
MG
1_555
A
HOH
611
K
O
HOH
1_555
70.8
A
A
14
A
OP2
A
14
1_555
A
MG
580
I
MG
MG
1_555
A
HOH
611
K
O
HOH
1_555
87.8
A
U
7
A
OP1
U
7
1_555
A
MG
580
I
MG
MG
1_555
A
HOH
737
K
O
HOH
1_555
105.5
A
A
14
A
OP2
A
14
1_555
A
MG
580
I
MG
MG
1_555
A
HOH
737
K
O
HOH
1_555
97.3
A
HOH
611
K
O
HOH
1_555
A
MG
580
I
MG
MG
1_555
A
HOH
737
K
O
HOH
1_555
174.7
A
G
15
A
N7
G
15
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
738
K
O
HOH
1_555
92.3
A
G
15
A
N7
G
15
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
739
K
O
HOH
1_555
87.9
A
HOH
738
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
739
K
O
HOH
1_555
179.7
A
G
15
A
N7
G
15
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
740
K
O
HOH
1_555
94.0
A
HOH
738
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
740
K
O
HOH
1_555
90.1
A
HOH
739
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
740
K
O
HOH
1_555
90.1
A
G
15
A
N7
G
15
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
741
K
O
HOH
1_555
85.9
A
HOH
738
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
741
K
O
HOH
1_555
90.0
A
HOH
739
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
741
K
O
HOH
1_555
89.8
A
HOH
740
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
741
K
O
HOH
1_555
179.9
A
G
15
A
N7
G
15
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
742
K
O
HOH
1_555
175.3
A
HOH
738
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
742
K
O
HOH
1_555
89.9
A
HOH
739
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
742
K
O
HOH
1_555
89.9
A
HOH
740
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
742
K
O
HOH
1_555
90.2
A
HOH
741
K
O
HOH
1_555
A
MN
550
J
MN
MN
1_555
A
HOH
742
K
O
HOH
1_555
89.9
A
H2U
16
A
O2'
H2U
16
1_555
A
MN
530
C
MN
MN
1_555
A
G
19
A
OP1
G
19
1_555
104.1
A
H2U
16
A
O2'
H2U
16
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
708
K
O
HOH
1_555
85.1
A
G
19
A
OP1
G
19
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
708
K
O
HOH
1_555
92.5
A
H2U
16
A
O2'
H2U
16
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
709
K
O
HOH
1_555
95.0
A
G
19
A
OP1
G
19
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
709
K
O
HOH
1_555
88.1
A
HOH
708
K
O
HOH
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
709
K
O
HOH
1_555
179.3
A
H2U
16
A
O2'
H2U
16
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
710
K
O
HOH
1_555
160.4
A
G
19
A
OP1
G
19
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
710
K
O
HOH
1_555
94.9
A
HOH
708
K
O
HOH
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
710
K
O
HOH
1_555
89.5
A
HOH
709
K
O
HOH
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
710
K
O
HOH
1_555
90.1
A
H2U
16
A
O2'
H2U
16
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
711
K
O
HOH
1_555
71.0
A
G
19
A
OP1
G
19
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
711
K
O
HOH
1_555
174.4
A
HOH
708
K
O
HOH
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
711
K
O
HOH
1_555
89.9
A
HOH
709
K
O
HOH
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
711
K
O
HOH
1_555
89.6
A
HOH
710
K
O
HOH
1_555
A
MN
530
C
MN
MN
1_555
A
HOH
711
K
O
HOH
1_555
90.2
A
G
20
A
OP1
G
20
1_555
A
MG
540
F
MG
MG
1_555
A
A
21
A
OP2
A
21
1_555
81.7
A
G
20
A
OP1
G
20
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
722
K
O
HOH
1_555
165.8
A
A
21
A
OP2
A
21
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
722
K
O
HOH
1_555
87.7
A
G
20
A
OP1
G
20
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
723
K
O
HOH
1_555
97.1
A
A
21
A
OP2
A
21
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
723
K
O
HOH
1_555
78.6
A
HOH
722
K
O
HOH
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
723
K
O
HOH
1_555
90.0
A
G
20
A
OP1
G
20
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
724
K
O
HOH
1_555
83.0
A
A
21
A
OP2
A
21
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
724
K
O
HOH
1_555
101.5
A
HOH
722
K
O
HOH
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
724
K
O
HOH
1_555
89.9
A
HOH
723
K
O
HOH
1_555
A
MG
540
F
MG
MG
1_555
A
HOH
724
K
O
HOH
1_555
179.9
A
YYG
37
A
OP2
YYG
37
1_555
A
MG
590
B
MG
MG
1_555
A
A
38
A
N7
A
38
1_555
132.9
A
YYG
37
A
OP2
YYG
37
1_555
A
MG
590
B
MG
MG
1_555
A
A
38
A
N6
A
38
1_555
164.8
A
A
38
A
N7
A
38
1_555
A
MG
590
B
MG
MG
1_555
A
A
38
A
N6
A
38
1_555
60.8
A
HOH
712
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
713
K
O
HOH
1_555
179.8
A
HOH
712
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
714
K
O
HOH
1_555
90.1
A
HOH
713
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
714
K
O
HOH
1_555
89.9
A
HOH
712
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
715
K
O
HOH
1_555
90.0
A
HOH
713
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
715
K
O
HOH
1_555
90.0
A
HOH
714
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
715
K
O
HOH
1_555
179.8
A
HOH
712
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
716
K
O
HOH
1_555
89.8
A
HOH
713
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
716
K
O
HOH
1_555
90.0
A
HOH
714
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
716
K
O
HOH
1_555
89.9
A
HOH
715
K
O
HOH
1_555
A
MG
510
D
MG
MG
1_555
A
HOH
716
K
O
HOH
1_555
89.9
A
HOH
725
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
726
K
O
HOH
1_555
179.8
A
HOH
725
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
727
K
O
HOH
1_555
90.1
A
HOH
726
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
727
K
O
HOH
1_555
90.0
A
HOH
725
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
728
K
O
HOH
1_555
89.8
A
HOH
726
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
728
K
O
HOH
1_555
90.1
A
HOH
727
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
728
K
O
HOH
1_555
179.8
A
HOH
725
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
729
K
O
HOH
1_555
90.3
A
HOH
726
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
729
K
O
HOH
1_555
89.8
A
HOH
727
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
729
K
O
HOH
1_555
89.9
A
HOH
728
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
729
K
O
HOH
1_555
90.0
A
HOH
725
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
730
K
O
HOH
1_555
89.9
A
HOH
726
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
730
K
O
HOH
1_555
90.1
A
HOH
727
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
730
K
O
HOH
1_555
90.0
A
HOH
728
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
730
K
O
HOH
1_555
90.0
A
HOH
729
K
O
HOH
1_555
A
MG
560
G
MG
MG
1_555
A
HOH
730
K
O
HOH
1_555
179.8
A
HOH
731
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
732
K
O
HOH
1_555
179.9
A
HOH
731
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
733
K
O
HOH
1_555
90.2
A
HOH
732
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
733
K
O
HOH
1_555
89.9
A
HOH
731
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
734
K
O
HOH
1_555
89.9
A
HOH
732
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
734
K
O
HOH
1_555
90.1
A
HOH
733
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
734
K
O
HOH
1_555
179.9
A
HOH
731
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
735
K
O
HOH
1_555
89.9
A
HOH
732
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
735
K
O
HOH
1_555
90.0
A
HOH
733
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
735
K
O
HOH
1_555
90.1
A
HOH
734
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
735
K
O
HOH
1_555
90.0
A
HOH
731
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
736
K
O
HOH
1_555
90.0
A
HOH
732
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
736
K
O
HOH
1_555
90.1
A
HOH
733
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
736
K
O
HOH
1_555
90.0
A
HOH
734
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
736
K
O
HOH
1_555
90.0
A
HOH
735
K
O
HOH
1_555
A
MG
570
H
MG
MG
1_555
A
HOH
736
K
O
HOH
1_555
179.9
A
2MG
10
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
2MG
10
G
A
H2U
16
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
16
U
A
H2U
17
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
17
U
A
M2G
26
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
A
M2G
26
G
A
OMC
32
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
A
OMC
32
C
A
OMG
34
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
OMG
34
G
A
YYG
37
A
YYG
37
G
A
PSU
39
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
39
U
A
5MC
40
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
A
5MC
40
C
A
7MG
46
A
7MG
46
G
A
5MC
49
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
A
5MC
49
C
A
5MU
54
5-METHYLURIDINE 5'-MONOPHOSPHATE
A
5MU
54
U
A
PSU
55
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
55
U
A
1MA
58
A
1MA
58
A
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
G
15
0.057
SIDE CHAIN
1
A
G
19
0.077
SIDE CHAIN
1
A
U
50
0.074
SIDE CHAIN
1
A
A
P
OP3
G
G
1
1
-0.084
0.012
1.607
1.523
N
1
A
A
C5
C6
A
A
9
9
-0.055
0.009
1.406
1.351
N
1
A
A
C4
N4
C
C
60
60
-0.056
0.009
1.335
1.279
N
-0.186
0.000
-1.147
-2.157
0.000
2.343
0.253
0.2334
1.93
40
1525
15371
15371
10.
88.9
RANDOM
1
THROUGHOUT
0
Parkinson et al.
1.93
40
160
1821
9
1652
0
0.0124
1.605
47.9
1.80
40
1EHZ
20604
19877
0.057
1
22.4
14.0
96.5
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
The biological assembly is a monomer.
covale
1.643
both
A
A
9
A
O3'
A
9
1_555
A
2MG
10
A
P
2MG
10
1_555
covale
1.596
both
A
2MG
10
A
O3'
2MG
10
1_555
A
C
11
A
P
C
11
1_555
covale
1.598
both
A
G
15
A
O3'
G
15
1_555
A
H2U
16
A
P
H2U
16
1_555
covale
1.630
both
A
H2U
16
A
O3'
H2U
16
1_555
A
H2U
17
A
P
H2U
17
1_555
covale
1.601
both
A
H2U
17
A
O3'
H2U
17
1_555
A
G
18
A
P
G
18
1_555
covale
1.602
both
A
C
25
A
O3'
C
25
1_555
A
M2G
26
A
P
M2G
26
1_555
covale
1.593
both
A
M2G
26
A
O3'
M2G
26
1_555
A
C
27
A
P
C
27
1_555
covale
1.616
both
A
A
31
A
O3'
A
31
1_555
A
OMC
32
A
P
OMC
32
1_555
covale
1.618
both
A
OMC
32
A
O3'
OMC
32
1_555
A
U
33
A
P
U
33
1_555
covale
1.612
both
A
U
33
A
O3'
U
33
1_555
A
OMG
34
A
P
OMG
34
1_555
covale
1.620
both
A
OMG
34
A
O3'
OMG
34
1_555
A
A
35
A
P
A
35
1_555
covale
1.618
both
A
A
36
A
O3'
A
36
1_555
A
YYG
37
A
P
YYG
37
1_555
covale
1.608
both
A
YYG
37
A
O3'
YYG
37
1_555
A
A
38
A
P
A
38
1_555
covale
1.604
both
A
A
38
A
O3'
A
38
1_555
A
PSU
39
A
P
PSU
39
1_555
covale
1.602
both
A
PSU
39
A
O3'
PSU
39
1_555
A
5MC
40
A
P
5MC
40
1_555
covale
1.611
both
A
5MC
40
A
O3'
5MC
40
1_555
A
U
41
A
P
U
41
1_555
covale
1.610
both
A
G
45
A
O3'
G
45
1_555
A
7MG
46
A
P
7MG
46
1_555
covale
1.635
both
A
7MG
46
A
O3'
7MG
46
1_555
A
U
47
A
P
U
47
1_555
covale
1.578
both
A
C
48
A
O3'
C
48
1_555
A
5MC
49
A
P
5MC
49
1_555
covale
1.638
both
A
5MC
49
A
O3'
5MC
49
1_555
A
U
50
A
P
U
50
1_555
covale
1.624
both
A
G
53
A
O3'
G
53
1_555
A
5MU
54
A
P
5MU
54
1_555
covale
1.615
both
A
5MU
54
A
O3'
5MU
54
1_555
A
PSU
55
A
P
PSU
55
1_555
covale
1.598
both
A
PSU
55
A
O3'
PSU
55
1_555
A
C
56
A
P
C
56
1_555
covale
1.584
both
A
G
57
A
O3'
G
57
1_555
A
1MA
58
A
P
1MA
58
1_555
covale
1.646
both
A
1MA
58
A
O3'
1MA
58
1_555
A
U
59
A
P
U
59
1_555
metalc
2.302
A
G
1
A
N7
G
1
1_555
A
MN
520
E
MN
MN
1_555
metalc
2.605
A
U
7
A
OP1
U
7
1_555
A
MG
580
I
MG
MG
1_555
metalc
1.929
A
A
14
A
OP2
A
14
1_555
A
MG
580
I
MG
MG
1_555
metalc
2.477
A
G
15
A
N7
G
15
1_555
A
MN
550
J
MN
MN
1_555
metalc
2.338
A
H2U
16
A
O2'
H2U
16
1_555
A
MN
530
C
MN
MN
1_555
metalc
2.187
A
G
19
A
OP1
G
19
1_555
A
MN
530
C
MN
MN
1_555
metalc
2.072
A
G
20
A
OP1
G
20
1_555
A
MG
540
F
MG
MG
1_555
metalc
2.109
A
A
21
A
OP2
A
21
1_555
A
MG
540
F
MG
MG
1_555
metalc
2.531
A
YYG
37
A
OP2
YYG
37
1_555
A
MG
590
B
MG
MG
1_555
metalc
3.093
A
A
38
A
N7
A
38
1_555
A
MG
590
B
MG
MG
1_555
metalc
3.000
A
A
38
A
N6
A
38
1_555
A
MG
590
B
MG
MG
1_555
metalc
2.001
A
MG
510
D
MG
MG
1_555
A
HOH
712
K
O
HOH
1_555
metalc
1.999
A
MG
510
D
MG
MG
1_555
A
HOH
713
K
O
HOH
1_555
metalc
2.003
A
MG
510
D
MG
MG
1_555
A
HOH
714
K
O
HOH
1_555
metalc
2.004
A
MG
510
D
MG
MG
1_555
A
HOH
715
K
O
HOH
1_555
metalc
2.005
A
MG
510
D
MG
MG
1_555
A
HOH
716
K
O
HOH
1_555
metalc
2.000
A
MN
520
E
MN
MN
1_555
A
HOH
717
K
O
HOH
1_555
metalc
2.000
A
MN
520
E
MN
MN
1_555
A
HOH
718
K
O
HOH
1_555
metalc
1.999
A
MN
520
E
MN
MN
1_555
A
HOH
719
K
O
HOH
1_555
metalc
2.001
A
MN
520
E
MN
MN
1_555
A
HOH
720
K
O
HOH
1_555
metalc
2.000
A
MN
520
E
MN
MN
1_555
A
HOH
721
K
O
HOH
1_555
metalc
2.001
A
MN
530
C
MN
MN
1_555
A
HOH
708
K
O
HOH
1_555
metalc
2.005
A
MN
530
C
MN
MN
1_555
A
HOH
709
K
O
HOH
1_555
metalc
1.997
A
MN
530
C
MN
MN
1_555
A
HOH
710
K
O
HOH
1_555
metalc
2.008
A
MN
530
C
MN
MN
1_555
A
HOH
711
K
O
HOH
1_555
metalc
2.002
A
MG
540
F
MG
MG
1_555
A
HOH
722
K
O
HOH
1_555
metalc
2.000
A
MG
540
F
MG
MG
1_555
A
HOH
723
K
O
HOH
1_555
metalc
2.002
A
MG
540
F
MG
MG
1_555
A
HOH
724
K
O
HOH
1_555
metalc
2.002
A
MN
550
J
MN
MN
1_555
A
HOH
738
K
O
HOH
1_555
metalc
2.001
A
MN
550
J
MN
MN
1_555
A
HOH
739
K
O
HOH
1_555
metalc
1.996
A
MN
550
J
MN
MN
1_555
A
HOH
740
K
O
HOH
1_555
metalc
2.006
A
MN
550
J
MN
MN
1_555
A
HOH
741
K
O
HOH
1_555
metalc
1.998
A
MN
550
J
MN
MN
1_555
A
HOH
742
K
O
HOH
1_555
metalc
2.004
A
MG
560
G
MG
MG
1_555
A
HOH
725
K
O
HOH
1_555
metalc
2.004
A
MG
560
G
MG
MG
1_555
A
HOH
726
K
O
HOH
1_555
metalc
2.003
A
MG
560
G
MG
MG
1_555
A
HOH
727
K
O
HOH
1_555
metalc
1.999
A
MG
560
G
MG
MG
1_555
A
HOH
728
K
O
HOH
1_555
metalc
2.005
A
MG
560
G
MG
MG
1_555
A
HOH
729
K
O
HOH
1_555
metalc
1.999
A
MG
560
G
MG
MG
1_555
A
HOH
730
K
O
HOH
1_555
metalc
2.001
A
MG
570
H
MG
MG
1_555
A
HOH
731
K
O
HOH
1_555
metalc
2.009
A
MG
570
H
MG
MG
1_555
A
HOH
732
K
O
HOH
1_555
metalc
2.002
A
MG
570
H
MG
MG
1_555
A
HOH
733
K
O
HOH
1_555
metalc
2.001
A
MG
570
H
MG
MG
1_555
A
HOH
734
K
O
HOH
1_555
metalc
1.996
A
MG
570
H
MG
MG
1_555
A
HOH
735
K
O
HOH
1_555
metalc
2.001
A
MG
570
H
MG
MG
1_555
A
HOH
736
K
O
HOH
1_555
metalc
2.775
A
MG
580
I
MG
MG
1_555
A
HOH
611
K
O
HOH
1_555
metalc
2.003
A
MG
580
I
MG
MG
1_555
A
HOH
737
K
O
HOH
1_555
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
72
A
N3
C
72
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
72
A
O2
C
72
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
72
A
N4
C
72
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
71
A
N1
G
71
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
71
A
O6
G
71
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
71
A
N2
G
71
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
70
A
N3
C
70
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
70
A
O2
C
70
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
70
A
N4
C
70
1_555
hydrog
TYPE_28_PAIR
A
G
4
A
N1
G
4
1_555
A
U
69
A
O2
U
69
1_555
hydrog
TYPE_28_PAIR
A
G
4
A
O6
G
4
1_555
A
U
69
A
N3
U
69
1_555
hydrog
WATSON-CRICK
A
A
5
A
N1
A
5
1_555
A
U
68
A
N3
U
68
1_555
hydrog
WATSON-CRICK
A
A
5
A
N6
A
5
1_555
A
U
68
A
O4
U
68
1_555
hydrog
WATSON-CRICK
A
U
6
A
N3
U
6
1_555
A
A
67
A
N1
A
67
1_555
hydrog
WATSON-CRICK
A
U
6
A
O4
U
6
1_555
A
A
67
A
N6
A
67
1_555
hydrog
WATSON-CRICK
A
U
7
A
N3
U
7
1_555
A
A
66
A
N1
A
66
1_555
hydrog
WATSON-CRICK
A
U
7
A
O4
U
7
1_555
A
A
66
A
N6
A
66
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
N3
U
8
1_555
A
A
14
A
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
O2
U
8
1_555
A
A
14
A
N6
A
14
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N6
A
9
1_555
A
A
23
A
N7
A
23
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N7
A
9
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
N1
2MG
10
1_555
A
C
25
A
N3
C
25
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
N2
2MG
10
1_555
A
C
25
A
O2
C
25
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
O6
2MG
10
1_555
A
C
25
A
N4
C
25
1_555
hydrog
2MG-G MISPAIR
A
2MG
10
A
O6
2MG
10
1_555
A
G
45
A
N2
G
45
1_555
hydrog
WATSON-CRICK
A
C
11
A
N3
C
11
1_555
A
G
24
A
N1
G
24
1_555
hydrog
WATSON-CRICK
A
C
11
A
N4
C
11
1_555
A
G
24
A
O6
G
24
1_555
hydrog
WATSON-CRICK
A
C
11
A
O2
C
11
1_555
A
G
24
A
N2
G
24
1_555
hydrog
WATSON-CRICK
A
U
12
A
N3
U
12
1_555
A
A
23
A
N1
A
23
1_555
hydrog
WATSON-CRICK
A
U
12
A
O4
U
12
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
C
13
A
N3
C
13
1_555
A
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
13
A
N4
C
13
1_555
A
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
13
A
O2
C
13
1_555
A
G
22
A
N2
G
22
1_555
hydrog
REVERSED WATSON-CRICK
A
G
15
A
N1
G
15
1_555
A
C
48
A
O2
C
48
1_555
hydrog
REVERSED WATSON-CRICK
A
G
15
A
N2
G
15
1_555
A
C
48
A
N3
C
48
1_555
hydrog
G-PSU MISPAIR
A
G
18
A
N1
G
18
1_555
A
PSU
55
A
O4
PSU
55
1_555
hydrog
WATSON-CRICK
A
G
19
A
N1
G
19
1_555
A
C
56
A
N3
C
56
1_555
hydrog
WATSON-CRICK
A
G
19
A
N2
G
19
1_555
A
C
56
A
O2
C
56
1_555
hydrog
WATSON-CRICK
A
G
19
A
O6
G
19
1_555
A
C
56
A
N4
C
56
1_555
hydrog
TYPE_7_PAIR
A
G
22
A
N7
G
22
1_555
A
7MG
46
A
N1
7MG
46
1_555
hydrog
TYPE_7_PAIR
A
G
22
A
O6
G
22
1_555
A
7MG
46
A
N2
7MG
46
1_555
hydrog
TYPE_8_PAIR
A
M2G
26
A
N1
M2G
26
1_555
A
A
44
A
N1
A
44
1_555
hydrog
TYPE_8_PAIR
A
M2G
26
A
O6
M2G
26
1_555
A
A
44
A
N6
A
44
1_555
hydrog
WATSON-CRICK
A
C
27
A
N3
C
27
1_555
A
G
43
A
N1
G
43
1_555
hydrog
WATSON-CRICK
A
C
27
A
N4
C
27
1_555
A
G
43
A
O6
G
43
1_555
hydrog
WATSON-CRICK
A
C
27
A
O2
C
27
1_555
A
G
43
A
N2
G
43
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
28
1_555
A
G
42
A
N1
G
42
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
28
1_555
A
G
42
A
O6
G
42
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
28
1_555
A
G
42
A
N2
G
42
1_555
hydrog
WATSON-CRICK
A
A
29
A
N1
A
29
1_555
A
U
41
A
N3
U
41
1_555
hydrog
WATSON-CRICK
A
A
29
A
N6
A
29
1_555
A
U
41
A
O4
U
41
1_555
hydrog
WATSON-CRICK
A
G
30
A
N1
G
30
1_555
A
5MC
40
A
N3
5MC
40
1_555
hydrog
WATSON-CRICK
A
G
30
A
N2
G
30
1_555
A
5MC
40
A
O2
5MC
40
1_555
hydrog
WATSON-CRICK
A
G
30
A
O6
G
30
1_555
A
5MC
40
A
N4
5MC
40
1_555
hydrog
OMC-A MISPAIR
A
OMC
32
A
O2
OMC
32
1_555
A
A
38
A
N6
A
38
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
N3
5MC
49
1_555
A
G
65
A
N1
G
65
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
N4
5MC
49
1_555
A
G
65
A
O6
G
65
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
O2
5MC
49
1_555
A
G
65
A
N2
G
65
1_555
hydrog
WATSON-CRICK
A
U
50
A
N3
U
50
1_555
A
A
64
A
N1
A
64
1_555
hydrog
WATSON-CRICK
A
U
50
A
O4
U
50
1_555
A
A
64
A
N6
A
64
1_555
hydrog
WATSON-CRICK
A
G
51
A
N1
G
51
1_555
A
C
63
A
N3
C
63
1_555
hydrog
WATSON-CRICK
A
G
51
A
N2
G
51
1_555
A
C
63
A
O2
C
63
1_555
hydrog
WATSON-CRICK
A
G
51
A
O6
G
51
1_555
A
C
63
A
N4
C
63
1_555
hydrog
WATSON-CRICK
A
U
52
A
N3
U
52
1_555
A
A
62
A
N1
A
62
1_555
hydrog
WATSON-CRICK
A
U
52
A
O4
U
52
1_555
A
A
62
A
N6
A
62
1_555
hydrog
WATSON-CRICK
A
G
53
A
N1
G
53
1_555
A
C
61
A
N3
C
61
1_555
hydrog
WATSON-CRICK
A
G
53
A
N2
G
53
1_555
A
C
61
A
O2
C
61
1_555
hydrog
WATSON-CRICK
A
G
53
A
O6
G
53
1_555
A
C
61
A
N4
C
61
1_555
hydrog
REVERSED HOOGSTEEN
A
5MU
54
A
N3
5MU
54
1_555
A
1MA
58
A
N7
1MA
58
1_555
hydrog
REVERSED HOOGSTEEN
A
5MU
54
A
O2
5MU
54
1_555
A
1MA
58
A
N6
1MA
58
1_555
RNA
tRNA, yeast, phenylalanine, RNA
M10263
GB
1
1
M10263
GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
1
76
1EHZ
1
76
M10263
A
1
1
76
1
G
modified residue
2MG
10
1EHZ
A
M10263
GB
10
10
1
U
modified residue
H2U
16
1EHZ
A
M10263
GB
16
16
1
U
modified residue
H2U
17
1EHZ
A
M10263
GB
17
17
1
G
modified residue
M2G
26
1EHZ
A
M10263
GB
26
26
1
C
modified residue
OMC
32
1EHZ
A
M10263
GB
32
32
1
G
modified residue
OMG
34
1EHZ
A
M10263
GB
34
34
1
G
modified residue
YYG
37
1EHZ
A
M10263
GB
37
37
1
U
modified residue
PSU
39
1EHZ
A
M10263
GB
39
39
1
C
modified residue
5MC
40
1EHZ
A
M10263
GB
40
40
1
G
modified residue
7MG
46
1EHZ
A
M10263
GB
46
46
1
C
modified residue
5MC
49
1EHZ
A
M10263
GB
49
49
1
U
modified residue
5MU
54
1EHZ
A
M10263
GB
54
54
1
U
modified residue
PSU
55
1EHZ
A
M10263
GB
55
55
1
A
modified residue
1MA
58
1EHZ
A
M10263
GB
58
58
BINDING SITE FOR RESIDUE MG A 590
A
MG
590
Software
2
BINDING SITE FOR RESIDUE MN A 530
A
MN
530
Software
6
BINDING SITE FOR RESIDUE MG A 510
A
MG
510
Software
5
BINDING SITE FOR RESIDUE MN A 520
A
MN
520
Software
6
BINDING SITE FOR RESIDUE MG A 540
A
MG
540
Software
5
BINDING SITE FOR RESIDUE MG A 560
A
MG
560
Software
8
BINDING SITE FOR RESIDUE MG A 570
A
MG
570
Software
6
BINDING SITE FOR RESIDUE MG A 580
A
MG
580
Software
4
BINDING SITE FOR RESIDUE MN A 550
A
MN
550
Software
6
A
YYG
37
A
YYG
37
2
1_555
A
A
38
A
A
38
2
1_555
A
H2U
16
A
H2U
16
6
1_555
A
G
19
A
G
19
6
1_555
A
HOH
708
K
HOH
6
1_555
A
HOH
709
K
HOH
6
1_555
A
HOH
710
K
HOH
6
1_555
A
HOH
711
K
HOH
6
1_555
A
HOH
712
K
HOH
5
1_555
A
HOH
713
K
HOH
5
1_555
A
HOH
714
K
HOH
5
1_555
A
HOH
715
K
HOH
5
1_555
A
HOH
716
K
HOH
5
1_555
A
G
1
A
G
1
6
1_555
A
HOH
717
K
HOH
6
1_555
A
HOH
718
K
HOH
6
1_555
A
HOH
719
K
HOH
6
1_555
A
HOH
720
K
HOH
6
1_555
A
HOH
721
K
HOH
6
1_555
A
G
20
A
G
20
5
1_555
A
A
21
A
A
21
5
1_555
A
HOH
722
K
HOH
5
1_555
A
HOH
723
K
HOH
5
1_555
A
HOH
724
K
HOH
5
1_555
A
U
8
A
U
8
8
1_555
A
U
12
A
U
12
8
1_555
A
HOH
725
K
HOH
8
1_555
A
HOH
726
K
HOH
8
1_555
A
HOH
727
K
HOH
8
1_555
A
HOH
728
K
HOH
8
1_555
A
HOH
729
K
HOH
8
1_555
A
HOH
730
K
HOH
8
1_555
A
HOH
731
K
HOH
6
1_555
A
HOH
732
K
HOH
6
1_555
A
HOH
733
K
HOH
6
1_555
A
HOH
734
K
HOH
6
1_555
A
HOH
735
K
HOH
6
1_555
A
HOH
736
K
HOH
6
1_555
A
U
7
A
U
7
4
1_555
A
A
14
A
A
14
4
1_555
A
HOH
611
K
HOH
4
1_555
A
HOH
737
K
HOH
4
1_555
A
G
15
A
G
15
6
1_555
A
HOH
738
K
HOH
6
1_555
A
HOH
739
K
HOH
6
1_555
A
HOH
740
K
HOH
6
1_555
A
HOH
741
K
HOH
6
1_555
A
HOH
742
K
HOH
6
1_555
4
monoclinic
P 1 21 1