0.039557
0.000000
0.000000
0.000000
0.024661
0.000000
0.000000
0.000000
0.015354
0.00000
0.00000
0.00000
Minasov, G.
Teplova, M.
Nielsen, P.
Wengel, J.
Egli, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.280
40.550
65.130
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
C12 H17 N2 O9 P
364.245
n
2-O,3-ETHDIYL-ARABINOFURANOSYL-THYMINE-5'-MONOPHOSPHATE
[3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
MG
N
112
N
N
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
N
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
N
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
N
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
P
N
153
N
O
N
154
N
O
N
155
N
O
N
156
N
O
N
157
N
C
N
158
R
C
N
159
N
O
N
160
R
C
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
S
C
N
171
N
O
N
172
N
C
N
173
N
C
N
174
R
C
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
39
3525
3532
10.1021/bi992792j
10736151
Structural basis of cleavage by RNase H of hybrids of arabinonucleic acids and RNA.
2000
10.2210/pdb1ei4/pdb
pdb_00001ei4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
105.0
1
CCD
1999-06-04
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
5ID-B
APS
1.0000
SYNCHROTRON
APS BEAMLINE 5ID-B
3747.466
DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*G)-3')
2
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
18.015
water
154
nat
water
no
yes
(DC)(DG)(DC)(DG)(DA)(DA)(TLC)(TLC)(DC)(DG)(DC)(DG)
CGCGAATTCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1
2.14
42.41
VAPOR DIFFUSION, HANGING DROP
6.8
OLIGONUCLEOTIDE, SPERMINE, MAGNESIUM ACETATE, SODIUM CACODYLATE BUFFER, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
295.0
SPERMINE
1
MAGNESIUM ACETATE
1
SODIUM CACODYLATE BUFFER
1
MAGNESIUM ACETATE
2
0.719
1
19
A
1
B
24
-0.287
A_DC1:DG24_B
1
-4.948
0.234
0.145
-0.125
6.713
1
19
A
2
B
23
-2.214
A_DG2:DC23_B
2
-12.269
-0.196
0.481
-0.201
0.133
1
19
A
3
B
22
-0.709
A_DC3:DG22_B
3
-9.121
0.145
0.221
-0.222
13.367
1
19
A
4
B
21
1.024
A_DG4:DC21_B
4
-13.438
-0.253
0.115
-0.081
6.207
1
20
A
5
B
20
1.079
A_DA5:TLC20_B
5
-15.814
0.004
0.112
-0.076
5.354
1
20
A
6
B
19
3.940
A_DA6:TLC19_B
6
-23.259
0.009
0.335
-0.115
-6.277
1
20
A
7
B
18
4.292
A_TLC7:DA18_B
7
-22.267
0.045
0.377
-0.067
-4.960
1
20
A
8
B
17
1.960
A_TLC8:DA17_B
8
-12.338
-0.060
0.118
-0.169
-12.168
1
19
A
9
B
16
-0.381
A_DC9:DG16_B
9
-10.113
0.198
0.077
-0.113
4.791
1
19
A
10
B
15
1.974
A_DG10:DC15_B
10
-6.114
-0.143
0.224
-0.123
3.191
1
19
A
11
B
14
-2.167
A_DC11:DG14_B
11
-19.245
0.153
0.162
-0.169
3.265
1
19
A
12
B
13
0.064
A_DG12:DC13_B
12
-12.650
-0.063
0.223
-0.001
3.232
36.905
A
A
1
2
-2.097
B
B
24
23
3.220
-1.325
-0.378
0.229
AA_DC1DG2:DC23DG24_BB
1
-4.066
6.437
36.665
0.538
0.053
3.436
42.659
A
A
2
3
-9.526
B
B
23
22
3.513
-6.893
0.589
0.478
AA_DG2DC3:DG22DC23_BB
2
4.028
-5.567
41.940
1.399
-0.375
3.025
27.884
A
A
3
4
18.634
B
B
22
21
3.027
8.822
-0.395
0.597
AA_DC3DG4:DC21DG22_BB
3
2.093
-4.421
26.396
-0.764
1.296
3.372
38.958
A
A
4
5
0.978
B
B
21
20
3.381
0.652
0.197
-0.225
AA_DG4DA5:TLC20DC21_BB
4
-0.817
1.225
38.944
-0.419
-0.397
3.159
36.644
A
A
5
6
1.367
B
B
20
19
3.180
0.859
0.003
-0.474
AA_DA5DA6:TLC19TLC20_BB
5
-2.830
4.506
36.529
-0.868
-0.382
3.510
30.511
A
A
6
7
-3.246
B
B
19
18
3.467
-1.707
0.186
-0.836
AA_DA6TLC7:DA18TLC19_BB
6
0.353
-0.671
30.462
-1.227
-0.279
3.159
33.268
A
A
7
8
-0.506
B
B
18
17
3.179
-0.289
-0.074
-0.559
AA_TLC7TLC8:DA17DA18_BB
7
3.561
-6.231
33.081
-0.930
0.707
3.408
43.299
A
A
8
9
-4.782
B
B
17
16
3.407
-3.524
-0.223
-0.240
AA_TLC8DC9:DG16DA17_BB
8
1.247
-1.692
43.145
0.033
0.429
2.972
26.442
A
A
9
10
8.257
B
B
16
15
2.972
3.757
0.655
0.819
AA_DC9DG10:DC15DG16_BB
9
-2.830
6.218
26.028
0.876
-2.120
3.227
43.354
A
A
10
11
-13.508
B
B
15
14
3.391
-9.897
-1.273
0.588
AA_DG10DC11:DG14DC15_BB
10
-1.696
2.315
42.229
1.784
1.554
3.292
34.582
A
A
11
12
12.658
B
B
14
13
3.272
7.468
0.193
0.442
AA_DC11DG12:DC13DG14_BB
11
-0.032
0.054
33.789
-0.427
-0.330
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-03-27
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-02-24
REL
REL
MG
MAGNESIUM ION
SPM
SPERMINE
HOH
water
MG
25
2
MG
MG
25
A
SPM
521
3
SPM
SPM
521
B
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
31
4
HOH
HOH
31
A
HOH
57
4
HOH
HOH
57
A
HOH
59
4
HOH
HOH
59
A
HOH
61
4
HOH
HOH
61
A
HOH
65
4
HOH
HOH
65
A
HOH
78
4
HOH
HOH
78
A
HOH
101
4
HOH
HOH
101
A
HOH
102
4
HOH
HOH
102
A
HOH
106
4
HOH
HOH
106
A
HOH
107
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
112
4
HOH
HOH
112
A
HOH
113
4
HOH
HOH
113
A
HOH
114
4
HOH
HOH
114
A
HOH
116
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
119
4
HOH
HOH
119
A
HOH
122
4
HOH
HOH
122
A
HOH
123
4
HOH
HOH
123
A
HOH
125
4
HOH
HOH
125
A
HOH
126
4
HOH
HOH
126
A
HOH
128
4
HOH
HOH
128
A
HOH
133
4
HOH
HOH
133
A
HOH
134
4
HOH
HOH
134
A
HOH
141
4
HOH
HOH
141
A
HOH
146
4
HOH
HOH
146
A
HOH
147
4
HOH
HOH
147
A
HOH
149
4
HOH
HOH
149
A
HOH
152
4
HOH
HOH
152
A
HOH
153
4
HOH
HOH
153
A
HOH
155
4
HOH
HOH
155
A
HOH
158
4
HOH
HOH
158
A
HOH
159
4
HOH
HOH
159
A
HOH
160
4
HOH
HOH
160
A
HOH
162
4
HOH
HOH
162
A
HOH
165
4
HOH
HOH
165
A
HOH
174
4
HOH
HOH
174
A
HOH
179
4
HOH
HOH
179
A
HOH
182
4
HOH
HOH
182
A
HOH
183
4
HOH
HOH
183
A
HOH
190
4
HOH
HOH
190
A
HOH
196
4
HOH
HOH
196
A
HOH
197
4
HOH
HOH
197
A
HOH
201
4
HOH
HOH
201
A
HOH
208
4
HOH
HOH
208
A
HOH
226
4
HOH
HOH
226
A
HOH
227
4
HOH
HOH
227
A
HOH
239
4
HOH
HOH
239
A
HOH
249
4
HOH
HOH
249
A
HOH
252
4
HOH
HOH
252
A
HOH
266
4
HOH
HOH
266
A
HOH
269
4
HOH
HOH
269
A
HOH
270
4
HOH
HOH
270
A
HOH
271
4
HOH
HOH
271
A
HOH
273
4
HOH
HOH
273
A
HOH
277
4
HOH
HOH
277
A
HOH
303
4
HOH
HOH
303
A
HOH
309
4
HOH
HOH
309
A
HOH
311
4
HOH
HOH
311
A
HOH
314
4
HOH
HOH
314
A
HOH
316
4
HOH
HOH
316
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
330
4
HOH
HOH
330
A
HOH
30
4
HOH
HOH
30
B
HOH
48
4
HOH
HOH
48
B
HOH
49
4
HOH
HOH
49
B
HOH
66
4
HOH
HOH
66
B
HOH
69
4
HOH
HOH
69
B
HOH
70
4
HOH
HOH
70
B
HOH
72
4
HOH
HOH
72
B
HOH
74
4
HOH
HOH
74
B
HOH
75
4
HOH
HOH
75
B
HOH
79
4
HOH
HOH
79
B
HOH
103
4
HOH
HOH
103
B
HOH
104
4
HOH
HOH
104
B
HOH
105
4
HOH
HOH
105
B
HOH
109
4
HOH
HOH
109
B
HOH
110
4
HOH
HOH
110
B
HOH
111
4
HOH
HOH
111
B
HOH
115
4
HOH
HOH
115
B
HOH
127
4
HOH
HOH
127
B
HOH
129
4
HOH
HOH
129
B
HOH
130
4
HOH
HOH
130
B
HOH
131
4
HOH
HOH
131
B
HOH
136
4
HOH
HOH
136
B
HOH
137
4
HOH
HOH
137
B
HOH
139
4
HOH
HOH
139
B
HOH
143
4
HOH
HOH
143
B
HOH
144
4
HOH
HOH
144
B
HOH
145
4
HOH
HOH
145
B
HOH
148
4
HOH
HOH
148
B
HOH
151
4
HOH
HOH
151
B
HOH
154
4
HOH
HOH
154
B
HOH
161
4
HOH
HOH
161
B
HOH
163
4
HOH
HOH
163
B
HOH
164
4
HOH
HOH
164
B
HOH
168
4
HOH
HOH
168
B
HOH
169
4
HOH
HOH
169
B
HOH
170
4
HOH
HOH
170
B
HOH
172
4
HOH
HOH
172
B
HOH
175
4
HOH
HOH
175
B
HOH
178
4
HOH
HOH
178
B
HOH
181
4
HOH
HOH
181
B
HOH
184
4
HOH
HOH
184
B
HOH
188
4
HOH
HOH
188
B
HOH
191
4
HOH
HOH
191
B
HOH
192
4
HOH
HOH
192
B
HOH
195
4
HOH
HOH
195
B
HOH
199
4
HOH
HOH
199
B
HOH
204
4
HOH
HOH
204
B
HOH
210
4
HOH
HOH
210
B
HOH
211
4
HOH
HOH
211
B
HOH
213
4
HOH
HOH
213
B
HOH
228
4
HOH
HOH
228
B
HOH
237
4
HOH
HOH
237
B
HOH
241
4
HOH
HOH
241
B
HOH
242
4
HOH
HOH
242
B
HOH
244
4
HOH
HOH
244
B
HOH
245
4
HOH
HOH
245
B
HOH
251
4
HOH
HOH
251
B
HOH
253
4
HOH
HOH
253
B
HOH
254
4
HOH
HOH
254
B
HOH
278
4
HOH
HOH
278
B
HOH
281
4
HOH
HOH
281
B
HOH
283
4
HOH
HOH
283
B
HOH
285
4
HOH
HOH
285
B
HOH
301
4
HOH
HOH
301
B
HOH
302
4
HOH
HOH
302
B
HOH
304
4
HOH
HOH
304
B
HOH
305
4
HOH
HOH
305
B
HOH
306
4
HOH
HOH
306
B
HOH
307
4
HOH
HOH
307
B
HOH
308
4
HOH
HOH
308
B
HOH
310
4
HOH
HOH
310
B
HOH
312
4
HOH
HOH
312
B
HOH
313
4
HOH
HOH
313
B
HOH
315
4
HOH
HOH
315
B
HOH
317
4
HOH
HOH
317
B
HOH
320
4
HOH
HOH
320
B
HOH
321
4
HOH
HOH
321
B
HOH
325
4
HOH
HOH
325
B
HOH
328
4
HOH
HOH
328
B
HOH
329
4
HOH
HOH
329
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
TLC
7
n
7
TLC
7
A
TLC
8
n
8
TLC
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
TLC
19
n
7
TLC
19
B
TLC
20
n
8
TLC
20
B
C
21
n
9
DC
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
A
HOH
26
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
27
E
O
HOH
1_555
176.5
A
HOH
26
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
28
E
O
HOH
1_555
93.8
A
HOH
27
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
28
E
O
HOH
1_555
89.2
A
HOH
26
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
29
E
O
HOH
1_555
87.6
A
HOH
27
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
29
E
O
HOH
1_555
89.4
A
HOH
28
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
29
E
O
HOH
1_555
177.6
A
HOH
26
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
31
E
O
HOH
1_555
94.5
A
HOH
27
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
31
E
O
HOH
1_555
87.4
A
HOH
28
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
31
E
O
HOH
1_555
89.3
A
HOH
29
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
A
HOH
31
E
O
HOH
1_555
92.5
A
HOH
26
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
B
HOH
30
F
O
HOH
1_555
88.3
A
HOH
27
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
B
HOH
30
F
O
HOH
1_555
89.8
A
HOH
28
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
B
HOH
30
F
O
HOH
1_555
90.1
A
HOH
29
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
B
HOH
30
F
O
HOH
1_555
88.0
A
HOH
31
E
O
HOH
1_555
A
MG
25
C
MG
MG
1_555
B
HOH
30
F
O
HOH
1_555
177.1
A
TLC
7
A
TLC
7
DT
A
TLC
8
A
TLC
8
DT
B
TLC
19
B
TLC
7
DT
B
TLC
20
B
TLC
8
DT
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DC
9
0.091
SIDE CHAIN
1
A
DC
11
0.081
SIDE CHAIN
1
B
DC
15
0.061
SIDE CHAIN
1
B
DC
23
0.073
SIDE CHAIN
-6.795
0.000
0.000
1.823
0.000
4.972
MAXIMUM LIKELIHOOD TARGET USING AMPLITUDES, BULK SOLVENT CORRECTION
0.2110000
0.1980000
0.1980000
1.43
17.0
1296
12720
12716
10
98.2
RANDOM
1
THROUGHOUT
0.0
0.0
PARKINSON ET AL.
1.43
17.0
159
672
15
498
0
0.010
1.55
1.43
20.0
1EI4
13592
13592
-3.0
0.0650000
1
44.4
8.5
99.9
0.1880000
1.43
1.48
6.6
99.2
phasing
AMoRE
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
covale
1.598
both
A
DA
6
A
O3'
DA
6
1_555
A
TLC
7
A
P
TLC
7
1_555
covale
1.606
both
A
TLC
7
A
O3'
TLC
7
1_555
A
TLC
8
A
P
TLC
8
1_555
covale
1.614
both
A
TLC
8
A
O3'
TLC
8
1_555
A
DC
9
A
P
DC
9
1_555
covale
1.608
both
B
DA
18
B
O3'
DA
6
1_555
B
TLC
19
B
P
TLC
7
1_555
covale
1.619
both
B
TLC
19
B
O3'
TLC
7
1_555
B
TLC
20
B
P
TLC
8
1_555
covale
1.615
both
B
TLC
20
B
O3'
TLC
8
1_555
B
DC
21
B
P
DC
9
1_555
metalc
2.134
A
MG
25
C
MG
MG
1_555
A
HOH
26
E
O
HOH
1_555
metalc
2.068
A
MG
25
C
MG
MG
1_555
A
HOH
27
E
O
HOH
1_555
metalc
2.106
A
MG
25
C
MG
MG
1_555
A
HOH
28
E
O
HOH
1_555
metalc
2.216
A
MG
25
C
MG
MG
1_555
A
HOH
29
E
O
HOH
1_555
metalc
2.210
A
MG
25
C
MG
MG
1_555
A
HOH
31
E
O
HOH
1_555
metalc
2.165
A
MG
25
C
MG
MG
1_555
B
HOH
30
F
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
21
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
21
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
21
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
TLC
20
B
N3
TLC
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
TLC
20
B
O4
TLC
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
TLC
19
B
N3
TLC
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
TLC
19
B
O4
TLC
7
1_555
hydrog
WATSON-CRICK
A
TLC
7
A
N3
TLC
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
TLC
7
A
O4
TLC
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
TLC
8
A
N3
TLC
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
TLC
8
A
O4
TLC
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
MODIFIED B-DODECAMER, [3.3.0]BICYCLO-ARABINONUCLEIC ACID, DNA
1EI4
PDB
1
1EI4
1
12
1EI4
1
12
1EI4
A
1
1
12
13
24
1EI4
13
24
1EI4
B
1
1
12
BINDING SITE FOR RESIDUE SPM B 521
B
SPM
521
Software
12
BINDING SITE FOR RESIDUE MG A 25
A
MG
25
Software
6
A
DG
10
A
DG
10
12
1_555
A
HOH
227
E
HOH
12
1_555
A
HOH
252
E
HOH
12
1_555
B
DC
13
B
DC
1
12
1_555
B
DG
14
B
DG
2
12
1_555
B
TLC
19
B
TLC
7
12
4_556
B
DC
23
B
DC
11
12
2_655
B
DG
24
B
DG
12
12
2_655
B
HOH
148
F
HOH
12
2_655
B
HOH
164
F
HOH
12
1_555
B
HOH
281
F
HOH
12
2_655
B
HOH
325
F
HOH
12
1_555
A
HOH
26
E
HOH
6
1_555
A
HOH
27
E
HOH
6
1_555
A
HOH
28
E
HOH
6
1_555
A
HOH
29
E
HOH
6
1_555
A
HOH
31
E
HOH
6
1_555
B
HOH
30
F
HOH
6
1_555
19
orthorhombic
P 21 21 21