1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yee, A.
Booth, V.
Dharamsi, A.
Engel, A.
Edwards, A.M.
Arrowsmith, C.H.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
6311
6315
10.1073/pnas.97.12.6311
10841538
Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum.
2000
10.2210/pdb1eik/pdb
pdb_00001eik
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8826.354
RNA POLYMERASE SUBUNIT RPB5
2.7.7.6
1
man
polymer
no
no
MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQD
MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQD
A
TT9
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanothermobacter
Escherichia
sample
145262
Methanothermobacter thermautotrophicus
562
Escherichia coli
PET15B
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-06-21
1
1
2007-10-21
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
Y
RCSB
Y
RCSB
2000-02-25
REL
The structure was determined using triple-resonance NMR spectroscopy
structures with the lowest energy
50
10
3D_13C-separated_NOESY
3D_15N-separated_NOESY
150 mM NaCl
6.5
1
atm
298
K
distance geometry
simulated annealing
u-15n, 13c; 150 mM NaCl, 25 mM phosphate, 10% D2O, pH 6.5
90% H2O/10% D2O
processing
NMRPipe
data analysis
NMRView
3.0
BRUNGER
refinement
X-PLOR
600
Varian
INOVA
500
Varian
INOVA
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
ARG
3
n
3
ARG
3
A
GLU
4
n
4
GLU
4
A
ILE
5
n
5
ILE
5
A
LEU
6
n
6
LEU
6
A
LYS
7
n
7
LYS
7
A
HIS
8
n
8
HIS
8
A
GLN
9
n
9
GLN
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
PRO
12
n
12
PRO
12
A
GLU
13
n
13
GLU
13
A
HIS
14
n
14
HIS
14
A
VAL
15
n
15
VAL
15
A
ILE
16
n
16
ILE
16
A
LEU
17
n
17
LEU
17
A
ASN
18
n
18
ASN
18
A
GLU
19
n
19
GLU
19
A
SER
20
n
20
SER
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LYS
23
n
23
LYS
23
A
ARG
24
n
24
ARG
24
A
VAL
25
n
25
VAL
25
A
LEU
26
n
26
LEU
26
A
LYS
27
n
27
LYS
27
A
GLU
28
n
28
GLU
28
A
LEU
29
n
29
LEU
29
A
ASP
30
n
30
ASP
30
A
ALA
31
n
31
ALA
31
A
HIS
32
n
32
HIS
32
A
PRO
33
n
33
PRO
33
A
GLU
34
n
34
GLU
34
A
GLN
35
n
35
GLN
35
A
LEU
36
n
36
LEU
36
A
PRO
37
n
37
PRO
37
A
LYS
38
n
38
LYS
38
A
ILE
39
n
39
ILE
39
A
LYS
40
n
40
LYS
40
A
THR
41
n
41
THR
41
A
THR
42
n
42
THR
42
A
ASP
43
n
43
ASP
43
A
PRO
44
n
44
PRO
44
A
VAL
45
n
45
VAL
45
A
ALA
46
n
46
ALA
46
A
LYS
47
n
47
LYS
47
A
ALA
48
n
48
ALA
48
A
ILE
49
n
49
ILE
49
A
GLY
50
n
50
GLY
50
A
ALA
51
n
51
ALA
51
A
LYS
52
n
52
LYS
52
A
ARG
53
n
53
ARG
53
A
GLY
54
n
54
GLY
54
A
ASP
55
n
55
ASP
55
A
ILE
56
n
56
ILE
56
A
VAL
57
n
57
VAL
57
A
LYS
58
n
58
LYS
58
A
ILE
59
n
59
ILE
59
A
ILE
60
n
60
ILE
60
A
ARG
61
n
61
ARG
61
A
LYS
62
n
62
LYS
62
A
SER
63
n
63
SER
63
A
PRO
64
n
64
PRO
64
A
THR
65
n
65
THR
65
A
ALA
66
n
66
ALA
66
A
GLU
67
n
67
GLU
67
A
GLU
68
n
68
GLU
68
A
PHE
69
n
69
PHE
69
A
VAL
70
n
70
VAL
70
A
THR
71
n
71
THR
71
A
TYR
72
n
72
TYR
72
A
ARG
73
n
73
ARG
73
A
LEU
74
n
74
LEU
74
A
VAL
75
n
75
VAL
75
A
GLN
76
n
76
GLN
76
A
ASP
77
n
77
ASP
77
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
17
A
N
LEU
17
A
O
ILE
56
A
O
ILE
56
A
N
SER
63
A
N
SER
63
A
O
GLU
67
A
O
GLU
67
1
A
A
O
H
VAL
LYS
15
58
1.57
2
A
A
OD1
H
ASP
VAL
43
45
1.55
2
A
A
O
H
VAL
LYS
15
58
1.56
3
A
A
O
H
VAL
LYS
15
58
1.53
3
A
A
O
H
ASN
ALA
18
22
1.56
3
A
A
O
H
ARG
GLU
24
28
1.57
4
A
A
O
H
ASN
ALA
18
22
1.58
4
A
A
O
H
VAL
LYS
15
58
1.58
5
A
A
O
H
ARG
GLU
24
28
1.53
5
A
A
O
H
VAL
LEU
25
29
1.55
5
A
A
O
H
ARG
PHE
61
69
1.56
5
A
A
O
H
VAL
LYS
15
58
1.58
6
A
A
O
H
VAL
LYS
15
58
1.56
6
A
A
O
H
ASN
ALA
18
22
1.56
7
A
A
O
H
ARG
GLU
24
28
1.46
7
A
A
O
H
VAL
LYS
15
58
1.55
7
A
A
O
H
ASN
ALA
18
22
1.56
8
A
A
H
O
GLY
VAL
54
75
1.56
8
A
A
O
H
VAL
LYS
15
58
1.57
9
A
A
O
H
VAL
LYS
15
58
1.53
9
A
A
OD1
H
ASP
VAL
43
45
1.55
9
A
A
H
O
VAL
ARG
57
73
1.58
9
A
A
O
H
ASN
ALA
18
22
1.60
10
A
A
O
H
VAL
LYS
15
58
1.57
10
A
A
O
H
ARG
PHE
61
69
1.60
1
A
ARG
3
-92.59
-67.20
1
A
LEU
6
-169.34
55.67
1
A
LYS
7
64.29
-74.60
1
A
ASP
30
86.94
48.23
1
A
LEU
36
-49.19
166.22
1
A
PRO
44
-48.17
-18.43
1
A
ILE
49
45.45
26.35
1
A
ARG
53
-54.74
100.61
1
A
THR
65
81.25
44.36
2
A
GLU
4
-100.81
-162.65
2
A
LYS
7
-177.42
36.74
2
A
HIS
8
-175.46
-164.96
2
A
LEU
10
-49.93
160.11
2
A
ASP
30
84.95
44.98
2
A
PRO
44
-48.48
-16.98
2
A
ILE
49
45.28
25.31
2
A
ARG
53
-57.35
109.24
2
A
THR
65
82.47
53.82
3
A
LYS
2
-101.86
67.46
3
A
GLU
4
64.32
-162.41
3
A
ILE
5
-72.09
-86.31
3
A
LEU
6
53.29
106.40
3
A
LYS
7
60.66
162.23
3
A
LEU
10
-102.11
-62.50
3
A
PRO
12
-44.43
-177.32
3
A
ASP
30
82.96
48.12
3
A
PRO
44
-49.02
-18.41
3
A
ILE
49
45.50
25.73
3
A
ARG
53
-54.81
100.91
3
A
THR
65
81.46
45.93
3
A
ALA
66
44.41
27.52
4
A
LYS
2
-111.52
-70.03
4
A
ARG
3
56.03
73.09
4
A
LYS
7
-175.18
-158.41
4
A
HIS
8
-63.40
77.49
4
A
LEU
10
58.17
-84.43
4
A
PRO
12
-65.12
-179.13
4
A
ASP
30
83.91
44.39
4
A
PRO
44
-48.66
-19.10
4
A
ILE
49
43.75
27.02
4
A
ARG
53
-54.79
98.08
4
A
THR
65
85.55
-72.36
4
A
ALA
66
174.39
57.44
5
A
LEU
6
-163.25
93.20
5
A
LYS
7
179.87
-42.03
5
A
LEU
10
65.21
128.99
5
A
ASP
30
83.78
42.51
5
A
LEU
36
-47.61
156.14
5
A
PRO
44
-47.55
-19.52
5
A
ILE
49
43.93
27.58
5
A
ARG
53
-54.48
98.64
5
A
THR
65
76.34
-157.85
5
A
ALA
66
-89.92
41.35
6
A
LYS
2
-103.76
-78.01
6
A
GLU
4
-112.47
-167.34
6
A
LEU
6
39.47
98.02
6
A
LYS
7
-165.72
55.16
6
A
LEU
10
-100.83
-65.46
6
A
ASP
30
82.64
44.45
6
A
PRO
44
-48.43
-17.81
6
A
ILE
49
44.90
25.20
6
A
ARG
53
-56.94
100.65
6
A
THR
65
84.49
44.81
7
A
GLU
4
-120.87
-162.38
7
A
LEU
6
71.84
145.40
7
A
LYS
7
-174.29
-46.87
7
A
GLN
9
57.93
92.26
7
A
ASP
30
147.23
44.60
7
A
PRO
44
-47.71
-19.91
7
A
ILE
49
44.31
25.62
7
A
ARG
53
-55.88
100.46
7
A
THR
65
75.39
-161.93
8
A
GLU
4
-129.50
-163.31
8
A
HIS
8
-156.65
41.78
8
A
LEU
10
-106.48
-83.10
8
A
ASP
30
84.92
33.69
8
A
LEU
36
-48.81
157.33
8
A
PRO
44
-47.74
-19.56
8
A
ILE
49
43.85
27.08
8
A
THR
65
81.78
13.22
8
A
ALA
66
75.14
34.20
9
A
LYS
2
64.89
119.75
9
A
ILE
5
-69.78
63.21
9
A
LEU
6
175.66
146.35
9
A
LYS
7
-175.30
94.04
9
A
HIS
8
-148.47
33.73
9
A
LEU
10
-148.82
28.13
9
A
PRO
12
-77.63
-167.51
9
A
ASP
30
83.88
40.86
9
A
PRO
44
-46.53
-18.02
9
A
ILE
49
44.05
26.76
9
A
ARG
53
-54.59
101.78
9
A
THR
65
78.34
46.66
9
A
ALA
66
46.17
26.76
10
A
LYS
2
-135.84
-66.20
10
A
GLU
4
65.99
-163.45
10
A
LEU
6
-131.77
-48.04
10
A
LYS
7
-176.19
48.56
10
A
GLN
9
-165.53
87.85
10
A
LEU
10
59.99
152.08
10
A
ASP
30
84.31
45.44
10
A
PRO
44
-48.36
-19.08
10
A
ILE
49
43.90
27.66
10
A
ARG
53
-54.06
99.38
10
A
THR
65
77.22
-160.92
10
A
ALA
66
-88.91
46.66
Solution Structure of RNA Polymerase Subunit RPB5 from Methanobacterium Thermoautotrophicum
1
N
N
A
ASN
18
A
ASN
18
HELX_P
A
LEU
29
A
LEU
29
1
1
12
A
ASP
43
A
ASP
43
HELX_P
A
ALA
48
A
ALA
48
1
2
6
A
ILE
49
A
ILE
49
HELX_P
A
ALA
51
A
ALA
51
5
3
3
TRANSFERASE
rpb5, rpbH, rna polymerase subunit, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, Structural Genomics, PSI, Northeast Structural Genomics Consortium, TRANSFERASE
RPOH_METTH
UNP
1
O27122
1
77
1EIK
1
77
O27122
A
1
1
77
3
anti-parallel
anti-parallel
A
GLU
13
A
GLU
13
A
LEU
17
A
LEU
17
A
ILE
56
A
ILE
56
A
SER
63
A
SER
63
A
GLU
67
A
GLU
67
A
LEU
74
A
LEU
74
1
P 1