1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Yee, A. Booth, V. Dharamsi, A. Engel, A. Edwards, A.M. Arrowsmith, C.H. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 6311 6315 10.1073/pnas.97.12.6311 10841538 Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum. 2000 10.2210/pdb1eik/pdb pdb_00001eik 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8826.354 RNA POLYMERASE SUBUNIT RPB5 2.7.7.6 1 man polymer no no MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQD MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQD A TT9 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanothermobacter Escherichia sample 145262 Methanothermobacter thermautotrophicus 562 Escherichia coli PET15B Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-06-21 1 1 2007-10-21 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name Y RCSB Y RCSB 2000-02-25 REL The structure was determined using triple-resonance NMR spectroscopy structures with the lowest energy 50 10 3D_13C-separated_NOESY 3D_15N-separated_NOESY 150 mM NaCl 6.5 1 atm 298 K distance geometry simulated annealing u-15n, 13c; 150 mM NaCl, 25 mM phosphate, 10% D2O, pH 6.5 90% H2O/10% D2O processing NMRPipe data analysis NMRView 3.0 BRUNGER refinement X-PLOR 600 Varian INOVA 500 Varian INOVA MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A ARG 3 n 3 ARG 3 A GLU 4 n 4 GLU 4 A ILE 5 n 5 ILE 5 A LEU 6 n 6 LEU 6 A LYS 7 n 7 LYS 7 A HIS 8 n 8 HIS 8 A GLN 9 n 9 GLN 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A PRO 12 n 12 PRO 12 A GLU 13 n 13 GLU 13 A HIS 14 n 14 HIS 14 A VAL 15 n 15 VAL 15 A ILE 16 n 16 ILE 16 A LEU 17 n 17 LEU 17 A ASN 18 n 18 ASN 18 A GLU 19 n 19 GLU 19 A SER 20 n 20 SER 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LYS 23 n 23 LYS 23 A ARG 24 n 24 ARG 24 A VAL 25 n 25 VAL 25 A LEU 26 n 26 LEU 26 A LYS 27 n 27 LYS 27 A GLU 28 n 28 GLU 28 A LEU 29 n 29 LEU 29 A ASP 30 n 30 ASP 30 A ALA 31 n 31 ALA 31 A HIS 32 n 32 HIS 32 A PRO 33 n 33 PRO 33 A GLU 34 n 34 GLU 34 A GLN 35 n 35 GLN 35 A LEU 36 n 36 LEU 36 A PRO 37 n 37 PRO 37 A LYS 38 n 38 LYS 38 A ILE 39 n 39 ILE 39 A LYS 40 n 40 LYS 40 A THR 41 n 41 THR 41 A THR 42 n 42 THR 42 A ASP 43 n 43 ASP 43 A PRO 44 n 44 PRO 44 A VAL 45 n 45 VAL 45 A ALA 46 n 46 ALA 46 A LYS 47 n 47 LYS 47 A ALA 48 n 48 ALA 48 A ILE 49 n 49 ILE 49 A GLY 50 n 50 GLY 50 A ALA 51 n 51 ALA 51 A LYS 52 n 52 LYS 52 A ARG 53 n 53 ARG 53 A GLY 54 n 54 GLY 54 A ASP 55 n 55 ASP 55 A ILE 56 n 56 ILE 56 A VAL 57 n 57 VAL 57 A LYS 58 n 58 LYS 58 A ILE 59 n 59 ILE 59 A ILE 60 n 60 ILE 60 A ARG 61 n 61 ARG 61 A LYS 62 n 62 LYS 62 A SER 63 n 63 SER 63 A PRO 64 n 64 PRO 64 A THR 65 n 65 THR 65 A ALA 66 n 66 ALA 66 A GLU 67 n 67 GLU 67 A GLU 68 n 68 GLU 68 A PHE 69 n 69 PHE 69 A VAL 70 n 70 VAL 70 A THR 71 n 71 THR 71 A TYR 72 n 72 TYR 72 A ARG 73 n 73 ARG 73 A LEU 74 n 74 LEU 74 A VAL 75 n 75 VAL 75 A GLN 76 n 76 GLN 76 A ASP 77 n 77 ASP 77 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 17 A N LEU 17 A O ILE 56 A O ILE 56 A N SER 63 A N SER 63 A O GLU 67 A O GLU 67 1 A A O H VAL LYS 15 58 1.57 2 A A OD1 H ASP VAL 43 45 1.55 2 A A O H VAL LYS 15 58 1.56 3 A A O H VAL LYS 15 58 1.53 3 A A O H ASN ALA 18 22 1.56 3 A A O H ARG GLU 24 28 1.57 4 A A O H ASN ALA 18 22 1.58 4 A A O H VAL LYS 15 58 1.58 5 A A O H ARG GLU 24 28 1.53 5 A A O H VAL LEU 25 29 1.55 5 A A O H ARG PHE 61 69 1.56 5 A A O H VAL LYS 15 58 1.58 6 A A O H VAL LYS 15 58 1.56 6 A A O H ASN ALA 18 22 1.56 7 A A O H ARG GLU 24 28 1.46 7 A A O H VAL LYS 15 58 1.55 7 A A O H ASN ALA 18 22 1.56 8 A A H O GLY VAL 54 75 1.56 8 A A O H VAL LYS 15 58 1.57 9 A A O H VAL LYS 15 58 1.53 9 A A OD1 H ASP VAL 43 45 1.55 9 A A H O VAL ARG 57 73 1.58 9 A A O H ASN ALA 18 22 1.60 10 A A O H VAL LYS 15 58 1.57 10 A A O H ARG PHE 61 69 1.60 1 A ARG 3 -92.59 -67.20 1 A LEU 6 -169.34 55.67 1 A LYS 7 64.29 -74.60 1 A ASP 30 86.94 48.23 1 A LEU 36 -49.19 166.22 1 A PRO 44 -48.17 -18.43 1 A ILE 49 45.45 26.35 1 A ARG 53 -54.74 100.61 1 A THR 65 81.25 44.36 2 A GLU 4 -100.81 -162.65 2 A LYS 7 -177.42 36.74 2 A HIS 8 -175.46 -164.96 2 A LEU 10 -49.93 160.11 2 A ASP 30 84.95 44.98 2 A PRO 44 -48.48 -16.98 2 A ILE 49 45.28 25.31 2 A ARG 53 -57.35 109.24 2 A THR 65 82.47 53.82 3 A LYS 2 -101.86 67.46 3 A GLU 4 64.32 -162.41 3 A ILE 5 -72.09 -86.31 3 A LEU 6 53.29 106.40 3 A LYS 7 60.66 162.23 3 A LEU 10 -102.11 -62.50 3 A PRO 12 -44.43 -177.32 3 A ASP 30 82.96 48.12 3 A PRO 44 -49.02 -18.41 3 A ILE 49 45.50 25.73 3 A ARG 53 -54.81 100.91 3 A THR 65 81.46 45.93 3 A ALA 66 44.41 27.52 4 A LYS 2 -111.52 -70.03 4 A ARG 3 56.03 73.09 4 A LYS 7 -175.18 -158.41 4 A HIS 8 -63.40 77.49 4 A LEU 10 58.17 -84.43 4 A PRO 12 -65.12 -179.13 4 A ASP 30 83.91 44.39 4 A PRO 44 -48.66 -19.10 4 A ILE 49 43.75 27.02 4 A ARG 53 -54.79 98.08 4 A THR 65 85.55 -72.36 4 A ALA 66 174.39 57.44 5 A LEU 6 -163.25 93.20 5 A LYS 7 179.87 -42.03 5 A LEU 10 65.21 128.99 5 A ASP 30 83.78 42.51 5 A LEU 36 -47.61 156.14 5 A PRO 44 -47.55 -19.52 5 A ILE 49 43.93 27.58 5 A ARG 53 -54.48 98.64 5 A THR 65 76.34 -157.85 5 A ALA 66 -89.92 41.35 6 A LYS 2 -103.76 -78.01 6 A GLU 4 -112.47 -167.34 6 A LEU 6 39.47 98.02 6 A LYS 7 -165.72 55.16 6 A LEU 10 -100.83 -65.46 6 A ASP 30 82.64 44.45 6 A PRO 44 -48.43 -17.81 6 A ILE 49 44.90 25.20 6 A ARG 53 -56.94 100.65 6 A THR 65 84.49 44.81 7 A GLU 4 -120.87 -162.38 7 A LEU 6 71.84 145.40 7 A LYS 7 -174.29 -46.87 7 A GLN 9 57.93 92.26 7 A ASP 30 147.23 44.60 7 A PRO 44 -47.71 -19.91 7 A ILE 49 44.31 25.62 7 A ARG 53 -55.88 100.46 7 A THR 65 75.39 -161.93 8 A GLU 4 -129.50 -163.31 8 A HIS 8 -156.65 41.78 8 A LEU 10 -106.48 -83.10 8 A ASP 30 84.92 33.69 8 A LEU 36 -48.81 157.33 8 A PRO 44 -47.74 -19.56 8 A ILE 49 43.85 27.08 8 A THR 65 81.78 13.22 8 A ALA 66 75.14 34.20 9 A LYS 2 64.89 119.75 9 A ILE 5 -69.78 63.21 9 A LEU 6 175.66 146.35 9 A LYS 7 -175.30 94.04 9 A HIS 8 -148.47 33.73 9 A LEU 10 -148.82 28.13 9 A PRO 12 -77.63 -167.51 9 A ASP 30 83.88 40.86 9 A PRO 44 -46.53 -18.02 9 A ILE 49 44.05 26.76 9 A ARG 53 -54.59 101.78 9 A THR 65 78.34 46.66 9 A ALA 66 46.17 26.76 10 A LYS 2 -135.84 -66.20 10 A GLU 4 65.99 -163.45 10 A LEU 6 -131.77 -48.04 10 A LYS 7 -176.19 48.56 10 A GLN 9 -165.53 87.85 10 A LEU 10 59.99 152.08 10 A ASP 30 84.31 45.44 10 A PRO 44 -48.36 -19.08 10 A ILE 49 43.90 27.66 10 A ARG 53 -54.06 99.38 10 A THR 65 77.22 -160.92 10 A ALA 66 -88.91 46.66 Solution Structure of RNA Polymerase Subunit RPB5 from Methanobacterium Thermoautotrophicum 1 N N A ASN 18 A ASN 18 HELX_P A LEU 29 A LEU 29 1 1 12 A ASP 43 A ASP 43 HELX_P A ALA 48 A ALA 48 1 2 6 A ILE 49 A ILE 49 HELX_P A ALA 51 A ALA 51 5 3 3 TRANSFERASE rpb5, rpbH, rna polymerase subunit, OCSP, NESG, PROTEIN STRUCTURE INITIATIVE, Structural Genomics, PSI, Northeast Structural Genomics Consortium, TRANSFERASE RPOH_METTH UNP 1 O27122 1 77 1EIK 1 77 O27122 A 1 1 77 3 anti-parallel anti-parallel A GLU 13 A GLU 13 A LEU 17 A LEU 17 A ILE 56 A ILE 56 A SER 63 A SER 63 A GLU 67 A GLU 67 A LEU 74 A LEU 74 1 P 1