0.011225
0.006481
0.000000
0.000000
0.012962
0.000000
0.000000
0.000000
0.009097
0.00000
0.00000
0.00000
Saridakis, V.
Christendat, D.
Kimber, M.S.
Edwards, A.M.
Pai, E.F.
Midwest Center for Structural Genomics (MCSG)
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
89.084
89.084
109.926
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C21 H27 N7 O14 P2
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NA
N
251
S
P
N
252
N
O
N
253
N
O
N
254
N
O
N
255
N
C
N
256
R
C
N
257
N
O
N
258
S
C
N
259
N
O
N
260
R
C
N
261
N
O
N
262
R
C
Y
263
N
N
Y
264
N
C
Y
265
N
N
Y
266
N
C
Y
267
N
C
N
268
N
N
Y
269
N
N
Y
270
N
C
Y
271
N
N
Y
272
N
C
N
273
N
O
N
274
N
P
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
C
N
279
R
C
N
280
N
O
N
281
S
C
N
282
N
O
N
283
R
C
N
284
N
O
N
285
R
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
N
289
N
C
N
290
N
O
N
291
N
N
Y
292
N
C
Y
293
N
C
Y
294
N
C
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
S
N
377
N
O
N
378
N
O
N
379
N
O
N
380
N
O
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
R
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
Y
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
doub
N
269
N
sing
N
270
N
sing
Y
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
doub
Y
299
N
doub
N
300
N
sing
N
301
N
sing
Y
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
7225
7232
10.1074/jbc.M008810200
11063748
Insights into ligand binding and catalysis of a central step in NAD+ synthesis: structures of Methanobacterium thermoautotrophicum NMN adenylyltransferase complexes.
2001
10.2210/pdb1ej2/pdb
pdb_00001ej2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1999-10-11
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
14-BM-C
APS
1.0000
SYNCHROTRON
APS BEAMLINE 14-BM-C
20596.793
NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
2.7.7.1
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
1
syn
non-polymer
18.015
water
120
nat
water
no
no
MMTMRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQD
IECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVIDEI
NGVERIKHLAKKEVSELGGIS
MMTMRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQD
IECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVIDEI
NGVERIKHLAKKEVSELGGIS
A
APC050,TT4
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanothermobacter
Escherichia
sample
145262
Methanothermobacter thermautotrophicus
562
Escherichia coli
PLASMID
PET15B
1
3.06
59.76
VAPOR DIFFUSION, HANGING DROP
7.5
1.5 M LiSO4, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-03-14
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2000-02-29
REL
SO4
SULFATE ION
NA
SODIUM ION
NAD
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
HOH
water
SO4
1759
2
SO4
SO4
1759
A
NA
1000
3
NA
NA
1000
A
NAD
1339
4
NAD
NAD
1339
A
HOH
201
5
HOH
HOH
201
A
HOH
202
5
HOH
HOH
202
A
HOH
203
5
HOH
HOH
203
A
HOH
204
5
HOH
HOH
204
A
HOH
205
5
HOH
HOH
205
A
HOH
206
5
HOH
HOH
206
A
HOH
207
5
HOH
HOH
207
A
HOH
208
5
HOH
HOH
208
A
HOH
209
5
HOH
HOH
209
A
HOH
210
5
HOH
HOH
210
A
HOH
211
5
HOH
HOH
211
A
HOH
212
5
HOH
HOH
212
A
HOH
213
5
HOH
HOH
213
A
HOH
214
5
HOH
HOH
214
A
HOH
215
5
HOH
HOH
215
A
HOH
216
5
HOH
HOH
216
A
HOH
217
5
HOH
HOH
217
A
HOH
218
5
HOH
HOH
218
A
HOH
219
5
HOH
HOH
219
A
HOH
220
5
HOH
HOH
220
A
HOH
221
5
HOH
HOH
221
A
HOH
222
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
226
5
HOH
HOH
226
A
HOH
227
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
236
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
241
5
HOH
HOH
241
A
HOH
242
5
HOH
HOH
242
A
HOH
243
5
HOH
HOH
243
A
HOH
244
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
247
5
HOH
HOH
247
A
HOH
248
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
250
5
HOH
HOH
250
A
HOH
251
5
HOH
HOH
251
A
HOH
252
5
HOH
HOH
252
A
HOH
253
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
256
5
HOH
HOH
256
A
HOH
257
5
HOH
HOH
257
A
HOH
258
5
HOH
HOH
258
A
HOH
259
5
HOH
HOH
259
A
HOH
260
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
262
5
HOH
HOH
262
A
HOH
263
5
HOH
HOH
263
A
HOH
264
5
HOH
HOH
264
A
HOH
265
5
HOH
HOH
265
A
HOH
266
5
HOH
HOH
266
A
HOH
267
5
HOH
HOH
267
A
HOH
268
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
270
5
HOH
HOH
270
A
HOH
271
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
273
5
HOH
HOH
273
A
HOH
274
5
HOH
HOH
274
A
HOH
275
5
HOH
HOH
275
A
HOH
276
5
HOH
HOH
276
A
HOH
277
5
HOH
HOH
277
A
HOH
278
5
HOH
HOH
278
A
HOH
279
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
281
5
HOH
HOH
281
A
HOH
282
5
HOH
HOH
282
A
HOH
283
5
HOH
HOH
283
A
HOH
284
5
HOH
HOH
284
A
HOH
285
5
HOH
HOH
285
A
HOH
286
5
HOH
HOH
286
A
HOH
287
5
HOH
HOH
287
A
HOH
288
5
HOH
HOH
288
A
HOH
289
5
HOH
HOH
289
A
HOH
290
5
HOH
HOH
290
A
HOH
291
5
HOH
HOH
291
A
HOH
292
5
HOH
HOH
292
A
HOH
293
5
HOH
HOH
293
A
HOH
294
5
HOH
HOH
294
A
HOH
295
5
HOH
HOH
295
A
HOH
296
5
HOH
HOH
296
A
HOH
297
5
HOH
HOH
297
A
HOH
298
5
HOH
HOH
298
A
HOH
299
5
HOH
HOH
299
A
HOH
300
5
HOH
HOH
300
A
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
304
5
HOH
HOH
304
A
HOH
305
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
308
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
310
5
HOH
HOH
310
A
HOH
311
5
HOH
HOH
311
A
HOH
312
5
HOH
HOH
312
A
HOH
313
5
HOH
HOH
313
A
HOH
314
5
HOH
HOH
314
A
HOH
315
5
HOH
HOH
315
A
HOH
316
5
HOH
HOH
316
A
HOH
317
5
HOH
HOH
317
A
HOH
318
5
HOH
HOH
318
A
HOH
319
5
HOH
HOH
319
A
HOH
320
5
HOH
HOH
320
A
n
1
1
A
n
2
2
A
n
3
3
A
MET
4
n
4
MET
4
A
ARG
5
n
5
ARG
5
A
GLY
6
n
6
GLY
6
A
LEU
7
n
7
LEU
7
A
LEU
8
n
8
LEU
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ARG
11
n
11
ARG
11
A
MET
12
n
12
MET
12
A
GLN
13
n
13
GLN
13
A
PRO
14
n
14
PRO
14
A
PHE
15
n
15
PHE
15
A
HIS
16
n
16
HIS
16
A
ARG
17
n
17
ARG
17
A
GLY
18
n
18
GLY
18
A
HIS
19
n
19
HIS
19
A
LEU
20
n
20
LEU
20
A
GLN
21
n
21
GLN
21
A
VAL
22
n
22
VAL
22
A
ILE
23
n
23
ILE
23
A
LYS
24
n
24
LYS
24
A
SER
25
n
25
SER
25
A
ILE
26
n
26
ILE
26
A
LEU
27
n
27
LEU
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
VAL
30
n
30
VAL
30
A
ASP
31
n
31
ASP
31
A
GLU
32
n
32
GLU
32
A
LEU
33
n
33
LEU
33
A
ILE
34
n
34
ILE
34
A
ILE
35
n
35
ILE
35
A
CYS
36
n
36
CYS
36
A
ILE
37
n
37
ILE
37
A
GLY
38
n
38
GLY
38
A
SER
39
n
39
SER
39
A
ALA
40
n
40
ALA
40
A
GLN
41
n
41
GLN
41
A
LEU
42
n
42
LEU
42
A
SER
43
n
43
SER
43
A
HIS
44
n
44
HIS
44
A
SER
45
n
45
SER
45
A
ILE
46
n
46
ILE
46
A
ARG
47
n
47
ARG
47
A
ASP
48
n
48
ASP
48
A
PRO
49
n
49
PRO
49
A
PHE
50
n
50
PHE
50
A
THR
51
n
51
THR
51
A
ALA
52
n
52
ALA
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
ARG
55
n
55
ARG
55
A
VAL
56
n
56
VAL
56
A
MET
57
n
57
MET
57
A
MET
58
n
58
MET
58
A
LEU
59
n
59
LEU
59
A
THR
60
n
60
THR
60
A
LYS
61
n
61
LYS
61
A
ALA
62
n
62
ALA
62
A
LEU
63
n
63
LEU
63
A
SER
64
n
64
SER
64
A
GLU
65
n
65
GLU
65
A
ASN
66
n
66
ASN
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
SER
71
n
71
SER
71
A
ARG
72
n
72
ARG
72
A
TYR
73
n
73
TYR
73
A
TYR
74
n
74
TYR
74
A
ILE
75
n
75
ILE
75
A
ILE
76
n
76
ILE
76
A
PRO
77
n
77
PRO
77
A
VAL
78
n
78
VAL
78
A
GLN
79
n
79
GLN
79
A
ASP
80
n
80
ASP
80
A
ILE
81
n
81
ILE
81
A
GLU
82
n
82
GLU
82
A
CYS
83
n
83
CYS
83
A
ASN
84
n
84
ASN
84
A
ALA
85
n
85
ALA
85
A
LEU
86
n
86
LEU
86
A
TRP
87
n
87
TRP
87
A
VAL
88
n
88
VAL
88
A
GLY
89
n
89
GLY
89
A
HIS
90
n
90
HIS
90
A
ILE
91
n
91
ILE
91
A
LYS
92
n
92
LYS
92
A
MET
93
n
93
MET
93
A
LEU
94
n
94
LEU
94
A
THR
95
n
95
THR
95
A
PRO
96
n
96
PRO
96
A
PRO
97
n
97
PRO
97
A
PHE
98
n
98
PHE
98
A
ASP
99
n
99
ASP
99
A
ARG
100
n
100
ARG
100
A
VAL
101
n
101
VAL
101
A
TYR
102
n
102
TYR
102
A
SER
103
n
103
SER
103
A
GLY
104
n
104
GLY
104
A
ASN
105
n
105
ASN
105
A
PRO
106
n
106
PRO
106
A
LEU
107
n
107
LEU
107
A
VAL
108
n
108
VAL
108
A
GLN
109
n
109
GLN
109
A
ARG
110
n
110
ARG
110
A
LEU
111
n
111
LEU
111
A
PHE
112
n
112
PHE
112
A
SER
113
n
113
SER
113
A
GLU
114
n
114
GLU
114
A
ASP
115
n
115
ASP
115
A
GLY
116
n
116
GLY
116
A
TYR
117
n
117
TYR
117
A
GLU
118
n
118
GLU
118
A
VAL
119
n
119
VAL
119
A
THR
120
n
120
THR
120
A
ALA
121
n
121
ALA
121
A
PRO
122
n
122
PRO
122
A
PRO
123
n
123
PRO
123
A
LEU
124
n
124
LEU
124
A
PHE
125
n
125
PHE
125
A
TYR
126
n
126
TYR
126
A
ARG
127
n
127
ARG
127
A
ASP
128
n
128
ASP
128
A
ARG
129
n
129
ARG
129
A
TYR
130
n
130
TYR
130
A
SER
131
n
131
SER
131
A
GLY
132
n
132
GLY
132
A
THR
133
n
133
THR
133
A
GLU
134
n
134
GLU
134
A
VAL
135
n
135
VAL
135
A
ARG
136
n
136
ARG
136
A
ARG
137
n
137
ARG
137
A
ARG
138
n
138
ARG
138
A
MET
139
n
139
MET
139
A
LEU
140
n
140
LEU
140
A
ASP
141
n
141
ASP
141
A
ASP
142
n
142
ASP
142
A
GLY
143
n
143
GLY
143
A
ASP
144
n
144
ASP
144
A
TRP
145
n
145
TRP
145
A
ARG
146
n
146
ARG
146
A
SER
147
n
147
SER
147
A
LEU
148
n
148
LEU
148
A
LEU
149
n
149
LEU
149
A
PRO
150
n
150
PRO
150
A
GLU
151
n
151
GLU
151
A
SER
152
n
152
SER
152
A
VAL
153
n
153
VAL
153
A
VAL
154
n
154
VAL
154
A
GLU
155
n
155
GLU
155
A
VAL
156
n
156
VAL
156
A
ILE
157
n
157
ILE
157
A
ASP
158
n
158
ASP
158
A
GLU
159
n
159
GLU
159
A
ILE
160
n
160
ILE
160
A
ASN
161
n
161
ASN
161
A
GLY
162
n
162
GLY
162
A
VAL
163
n
163
VAL
163
A
GLU
164
n
164
GLU
164
A
ARG
165
n
165
ARG
165
A
ILE
166
n
166
ILE
166
A
LYS
167
n
167
LYS
167
A
HIS
168
n
168
HIS
168
A
LEU
169
n
169
LEU
169
A
ALA
170
n
170
ALA
170
A
n
171
171
A
n
172
172
A
n
173
173
A
n
174
174
A
n
175
175
A
n
176
176
A
n
177
177
A
n
178
178
A
n
179
179
A
n
180
180
A
n
181
181
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
6
hexameric
21330
-328
36340
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
89.0840000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
44.5420000000
77.1490070707
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
44.5420000000
77.1490070707
54.9630000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_655
-x+y+1,y,-z+1/2
crystal symmetry operation
89.0840000000
0.0000000000
54.9630000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
54.9630000000
A
N
TYR
74
A
N
TYR
74
A
O
LEU
33
A
O
LEU
33
A
N
ILE
34
A
N
ILE
34
A
O
GLY
6
A
O
GLY
6
A
N
LEU
7
A
N
LEU
7
A
O
ARG
100
A
O
ARG
100
A
O
VAL
101
A
O
VAL
101
A
N
THR
120
A
N
THR
120
1
A
MET
1
A
MET
1
1
Y
1
A
MET
2
A
MET
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
LYS
171
A
LYS
171
1
Y
1
A
LYS
172
A
LYS
172
1
Y
1
A
GLU
173
A
GLU
173
1
Y
1
A
VAL
174
A
VAL
174
1
Y
1
A
SER
175
A
SER
175
1
Y
1
A
GLU
176
A
GLU
176
1
Y
1
A
LEU
177
A
LEU
177
1
Y
1
A
GLY
178
A
GLY
178
1
Y
1
A
GLY
179
A
GLY
179
1
Y
1
A
ILE
180
A
ILE
180
1
Y
1
A
SER
181
A
SER
181
1
Y
1
-3.07
0.50
120.30
117.23
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
5
5
5
N
1
A
GLN
13
-115.42
72.35
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
NAD.PARAM
NAD.TOP
CIS_PEPTIDE.PARAM
CIS_PEPTIDE.TOP
36.5
0.81
1.62
0.00
0.81
0.00
-1.61
SIMULATED ANNEALING
0.241
0.005
0.211
0.211
1.90
28.30
1957
19052
10.3
91.0
RANDOM
1082435.71
0.00
1
RESTRAINED
THROUGHOUT
2.0
CNS 0.9
FLAT MODEL
50.04
0.388
0.27
0.23
5.00
0.21
0.18
1.90
28.30
120
1510
50
0
1340
0.016
1.8
23.9
1.23
1.06
1.50
1.68
2.00
1.76
2.00
2.65
2.50
0.263
0.016
0.251
2.02
263
2282
6
10.3
74.8
25.0
1.900
30.000
1EJ2
20932
521.500
0.041
1
37.0000
11.40
100.0
0.388
1.90
1.97
1
6.00
100.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
0.5
Crystal structure of methanobacterium thermoautotrophicum nicotinamide mononucleotide adenylyltransferase with bound NAD+
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
HIS
16
A
HIS
16
HELX_P
A
VAL
30
A
VAL
30
1
1
15
A
THR
51
A
THR
51
HELX_P
A
ASN
66
A
ASN
66
1
2
16
A
PRO
69
A
PRO
69
HELX_P
A
SER
71
A
SER
71
5
3
3
A
CYS
83
A
CYS
83
HELX_P
A
THR
95
A
THR
95
1
4
13
A
ASN
105
A
ASN
105
HELX_P
A
ASP
115
A
ASP
115
1
5
11
A
SER
131
A
SER
131
HELX_P
A
ASP
142
A
ASP
142
1
6
12
A
TRP
145
A
TRP
145
HELX_P
A
LEU
149
A
LEU
149
5
7
5
A
PRO
150
A
PRO
150
HELX_P
A
ILE
160
A
ILE
160
1
8
11
A
ASN
161
A
ASN
161
HELX_P
A
ALA
170
A
ALA
170
1
9
10
metalc
2.587
A
NA
1000
C
NA
NA
1_555
A
SO4
1759
B
O3
SO4
1_555
TRANSFERASE
DINUCLEOTIDE BINDING FOLD, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Northeast Structural Genomics Consortium, NESG, TRANSFERASE
A
GLN
13
A
GLN
13
1
A
PRO
14
A
PRO
14
0.20
NADM_METTH
UNP
1
O26253
1
181
1EJ2
1
181
O26253
A
1
1
181
5
parallel
parallel
parallel
parallel
A
TYR
73
A
TYR
73
A
PRO
77
A
PRO
77
A
GLU
32
A
GLU
32
A
ILE
37
A
ILE
37
A
ARG
5
A
ARG
5
A
GLY
10
A
GLY
10
A
ARG
100
A
ARG
100
A
TYR
102
A
TYR
102
A
VAL
119
A
VAL
119
A
THR
120
A
THR
120
BINDING SITE FOR RESIDUE SO4 A 1759
A
SO4
1759
Software
9
BINDING SITE FOR RESIDUE NA A 1000
A
NA
1000
Software
4
BINDING SITE FOR RESIDUE NAD A 1339
A
NAD
1339
Software
28
A
ARG
11
A
ARG
11
9
1_555
A
ARG
47
A
ARG
47
9
1_555
A
GLY
132
A
GLY
132
9
1_555
A
THR
133
A
THR
133
9
1_555
A
ARG
136
A
ARG
136
9
1_555
A
HOH
243
E
HOH
9
1_555
A
HOH
277
E
HOH
9
1_555
A
NA
1000
C
NA
9
1_555
A
NAD
1339
D
NAD
9
1_555
A
MET
12
A
MET
12
4
1_555
A
GLN
13
A
GLN
13
4
1_555
A
NAD
1339
D
NAD
4
1_555
A
SO4
1759
B
SO4
4
1_555
A
VAL
9
A
VAL
9
28
1_555
A
GLY
10
A
GLY
10
28
1_555
A
ARG
11
A
ARG
11
28
1_555
A
MET
12
A
MET
12
28
1_555
A
HIS
16
A
HIS
16
28
1_555
A
GLY
18
A
GLY
18
28
1_555
A
HIS
19
A
HIS
19
28
1_555
A
VAL
22
A
VAL
22
28
1_555
A
GLY
38
A
GLY
38
28
1_555
A
SER
39
A
SER
39
28
1_555
A
ASP
80
A
ASP
80
28
1_555
A
ILE
81
A
ILE
81
28
1_555
A
ASN
84
A
ASN
84
28
1_555
A
TRP
87
A
TRP
87
28
1_555
A
SER
103
A
SER
103
28
1_555
A
GLY
104
A
GLY
104
28
1_555
A
ASN
105
A
ASN
105
28
1_555
A
LEU
107
A
LEU
107
28
1_555
A
VAL
108
A
VAL
108
28
1_555
A
LEU
124
A
LEU
124
28
1_555
A
PHE
125
A
PHE
125
28
1_555
A
TYR
130
A
TYR
130
28
1_555
A
HOH
204
E
HOH
28
1_555
A
HOH
243
E
HOH
28
1_555
A
HOH
258
E
HOH
28
1_555
A
HOH
274
E
HOH
28
1_555
A
NA
1000
C
NA
28
1_555
A
SO4
1759
B
SO4
28
1_555
182
P 63 2 2