1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Gochin, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C7 H14 O4 162.184 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose D-saccharide, alpha linking C8 H14 O5 190.194 4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose 4-O-ACETYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 4-O-acetyl-2,6-dideoxy-beta-D-galactose; 4-O-acetyl-2,6-dideoxy-D-galactose; 4-O-acetyl-2,6-dideoxy-galactose D-saccharide, beta linking Co 2 58.933 COBALT (II) ION non-polymer C21 H24 O9 420.410 (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose None non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C6 H12 O4 148.157 beta-D-Olivopyranose beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE D-saccharide, beta linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C9 H16 O5 204.220 n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose L-saccharide, alpha linking N 1 N O N 2 S C N 3 N C N 4 R C N 5 N O N 6 R C N 7 N O N 8 N C N 9 R C N 10 N O N 11 N C N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N O N 27 R C N 28 N C N 29 R C N 30 N O N 31 R C N 32 N O N 33 N C N 34 N C N 35 N O N 36 R C N 37 N O N 38 N C N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N CO N 54 N C N 55 N O N 56 S C N 57 R C N 58 N C Y 59 N C Y 60 N C Y 61 N C Y 62 N C N 63 N O Y 64 N C N 65 N O N 66 S C N 67 N O Y 68 N C N 69 N C N 70 N O N 71 S C N 72 N O N 73 R C N 74 N O Y 75 N C N 76 N C Y 77 N C Y 78 N C Y 79 N C N 80 N C N 81 N O N 82 N O N 83 N C N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C Y 120 N N Y 121 N C Y 122 N N Y 123 N C Y 124 N C N 125 N N Y 126 N N Y 127 N C Y 128 N N Y 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C N 156 N N N 157 N C N 158 N O N 159 N N N 160 N C N 161 N N N 162 N C N 163 N C N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 R C N 179 N C N 180 R C N 181 S C N 182 R C N 183 N C N 184 N O N 185 N O N 186 N O N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N O N 201 N P N 202 N O N 203 N O N 204 N O N 205 N C N 206 R C N 207 N O N 208 S C N 209 N O N 210 N C N 211 R C Y 212 N N Y 213 N C Y 214 N N Y 215 N C N 216 N C N 217 N O N 218 N N N 219 N C N 220 N N N 221 N N Y 222 N C N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N O N 238 N P N 239 N O N 240 N O N 241 N O N 242 N C N 243 R C N 244 N O N 245 S C N 246 N O N 247 N C N 248 R C N 249 N N N 250 N C N 251 N O N 252 N N N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N O N 274 R C N 275 N C N 276 S C N 277 N O N 278 N C N 279 S C N 280 N O N 281 N C N 282 N C N 283 N O N 284 S C N 285 N O N 286 N C N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing Y 65 N doub Y 66 N sing N 67 N sing Y 68 N sing N 69 N sing N 70 N sing Y 71 N doub N 72 N sing Y 73 N sing N 74 N sing N 75 N sing Y 76 N doub Y 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing Y 83 N doub Y 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing Y 96 N doub N 97 N sing N 98 N sing N 99 N sing Y 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing Y 132 N sing Y 133 N sing Y 134 N doub N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N doub N 141 N sing N 142 N sing Y 143 N sing Y 144 N doub N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing Y 227 N sing Y 228 N sing Y 229 N doub N 230 N sing Y 231 N sing N 232 N sing Y 233 N doub N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing UK Structure Fold.Des. FODEFH 1263 0969-2126 8 441 452 10.1016/S0969-2126(00)00124-6 10801486 A high-resolution structure of a DNA-chromomycin-Co(II) complex determined from pseudocontact shifts in nuclear magnetic resonance. 2000 US J.Am.Chem.Soc. JACSAT 0004 0002-7863 121 9276 9285 10.1021/ja9904540 Structure determination by restrained molecular dynamics using NMR pseudocontact shifts as experimentally determined constraints 1999 10.2210/pdb1eki/pdb pdb_00001eki DA A 8 HAS WRONG CHIRALITY AT ATOM C3' DA B 18 HAS WRONG CHIRALITY AT ATOM C3' CPH A 33 HAS WRONG CHIRALITY AT ATOM C1' 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 TWO MOLECULES OF THE DRUG CHROMOMYCIN A3 (1GL-2GL-DXB-DDA-DDA-1AR, CHAINS C, AND D) ARE BOUND IN THE MINOR GROOVE 2426.617 DNA (5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3') 2 syn polymer 334.363 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose 2 man branched 464.504 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose 2 man branched 58.933 COBALT (II) ION 1 syn non-polymer 420.410 (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose 2 syn non-polymer no no (DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA) TTGGCCAA A,B polydeoxyribonucleotide n n n n n n n n 3.476 1 20 A 1 B 18 8.528 A_DT1:DA18_B 1 -24.133 0.142 -0.228 -0.108 -3.134 1 20 A 2 B 17 -5.318 A_DT2:DA17_B 2 -18.262 -0.011 -0.267 -0.050 -5.234 1 19 A 3 B 16 5.134 A_DG3:DC16_B 3 -9.137 -0.111 -0.011 -0.037 -1.693 1 19 A 4 B 15 -4.561 A_DG4:DC15_B 4 -22.407 0.073 0.630 -0.289 3.870 1 19 A 5 B 14 -4.124 A_DC5:DG14_B 5 -19.872 -0.080 0.508 -0.240 4.498 1 19 A 6 B 13 11.361 A_DC6:DG13_B 6 -12.092 0.885 -0.185 -0.100 5.335 1 20 A 7 B 12 -5.143 A_DA7:DT12_B 7 -16.053 0.099 -0.179 -0.036 0.591 1 20 A 8 B 11 9.683 A_DA8:DT11_B 8 -24.079 -0.225 -0.135 -0.107 3.060 33.718 A A 1 2 14.293 B B 18 17 3.337 8.197 -0.206 -0.600 AA_DT1DT2:DA17DA18_BB 1 3.607 -6.290 32.541 -2.362 0.939 2.918 37.609 A A 2 3 21.048 B B 17 16 3.342 13.289 0.783 -0.510 AA_DT2DG3:DC16DA17_BB 2 -2.112 3.345 35.201 -2.506 -1.487 3.023 26.945 A A 3 4 8.081 B B 16 15 3.253 3.753 1.314 -1.645 AA_DG3DG4:DC15DC16_BB 3 0.547 -1.177 26.681 -4.456 -2.686 2.617 29.046 A A 4 5 5.126 B B 15 14 2.846 2.567 -0.059 -2.499 AA_DG4DC5:DG14DC15_BB 4 0.591 -1.180 28.928 -5.455 0.226 3.164 28.127 A A 5 6 4.355 B B 14 13 3.282 2.115 -0.992 -1.589 AA_DC5DC6:DG13DG14_BB 5 -0.224 0.462 28.048 -3.758 1.989 3.071 35.636 A A 6 7 20.314 B B 13 12 3.353 12.190 -1.208 -0.070 AA_DC6DA7:DT12DG13_BB 6 1.927 -3.211 33.496 -1.910 2.257 2.989 32.545 A A 7 8 13.545 B B 12 11 3.274 7.504 0.201 -0.655 AA_DA7DA8:DT11DT12_BB 7 -4.305 7.770 31.404 -2.446 -1.092 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nmr_software pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Advisory Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Structure summary 1 0 2000-03-20 1 1 2008-04-27 1 2 2011-07-13 1 3 2011-12-28 2 0 2020-07-29 2 1 2024-05-01 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_nmr_software.name _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.value _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession A 2GL 32 n C 2GL 1 A 1GL 31 n C 1GL 2 B 2GL 22 n D 2GL 1 B 1GL 21 n D 1GL 2 B DDA 26 n E DDA 1 B DDA 25 n E DDA 2 B ERI 24 n E ERI 3 B DDA 36 n F DDA 1 B DDA 35 n F DDA 2 B ERI 34 n F ERI 3 a-D-2-deoxy-Fucp4OMe DOlib b-D-Olivopyranose b-D-2,6-deoxy-Glcp Oli Family of 6 structures RCSB Y RCSB 2000-03-08 REL oligosaccharide oligosaccharide WURCS=2.0/2,2,1/[ad112m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1 2 PDB2Glycan 1.1.0 WURCS [][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}} 2 PDB-CARE LINUCS WURCS=2.0/2,3,2/[ad122m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1 3 PDB2Glycan 1.1.0 WURCS [][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}} 3 PDB-CARE LINUCS C1 O3 1GL 2GL 2 1 2 O1 HO3 sing C1 O3 DDA DDA 2 1 3 O1 HO3 sing C1 O3 ERI DDA 3 2 3 O1 HO3 sing n n n n n CO COBALT (II) ION CPH (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose This structure was determined using standard 2D homonuclear techniques as well as 2D 13C-1H heteronuclear correlation average structure 1 1 2D NOESY 13C-1H HMQC 110mM 6 1 atm 298 K molecular dynamics, isolated spin-pair approximation for NOE's; pseudocontact shift refinement simulated annealing 1 minimized average structure 2mM DNA-drug complex, 25 degrees C, in buffer (100mM NaCl, 10mM Na borate), final PH 6. 90% H2O/10% D2O DeLaglio and Bax processing NMRPipe 1.7 Kneller and Goddard data analysis Sparky 3.0 Brunger (modified Gochin and Tu) refinement X-PLOR 3.0, 3.851 Biosym data analysis Felix 2.1 500 GE OMEGA CO 41 4 CO CO 41 A CPH 33 5 CPH CPH 33 A CPH 23 5 CPH CPH 23 B DT 1 n 1 DT 1 A DT 2 n 2 DT 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DC 6 n 6 DC 6 A DA 7 n 7 DA 7 A DA 8 n 8 DA 8 A DT 11 n 1 DT 11 B DT 12 n 2 DT 12 B DG 13 n 3 DG 13 B DG 14 n 4 DG 14 B DC 15 n 5 DC 15 B DC 16 n 6 DC 16 B DA 17 n 7 DA 17 B DA 18 n 8 DA 18 B author_defined_assembly 2 dimeric A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 A CPH 33 H O1 CPH 1_555 102.5 A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 A CPH 33 H C9 CPH 1_555 35.6 A CPH 33 H O1 CPH 1_555 A CO 41 G CO CO 1_555 A CPH 33 H C9 CPH 1_555 83.5 A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 A CPH 33 H C1 CPH 1_555 85.3 A CPH 33 H O1 CPH 1_555 A CO 41 G CO CO 1_555 A CPH 33 H C1 CPH 1_555 22.9 A CPH 33 H C9 CPH 1_555 A CO 41 G CO CO 1_555 A CPH 33 H C1 CPH 1_555 61.2 A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O9 CPH 1_555 120.4 A CPH 33 H O1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O9 CPH 1_555 115.3 A CPH 33 H C9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O9 CPH 1_555 155.1 A CPH 33 H C1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O9 CPH 1_555 138.1 A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O1 CPH 1_555 127.9 A CPH 33 H O1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O1 CPH 1_555 88.0 A CPH 33 H C9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O1 CPH 1_555 97.9 A CPH 33 H C1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O1 CPH 1_555 86.6 B CPH 23 I O9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I O1 CPH 1_555 98.9 A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C9 CPH 1_555 151.5 A CPH 33 H O1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C9 CPH 1_555 90.9 A CPH 33 H C9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C9 CPH 1_555 172.6 A CPH 33 H C1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C9 CPH 1_555 112.8 B CPH 23 I O9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C9 CPH 1_555 32.3 B CPH 23 I O1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C9 CPH 1_555 77.0 A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 146.1 A CPH 33 H O1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 91.8 A CPH 33 H C9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 118.8 A CPH 33 H C1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 98.1 B CPH 23 I O9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 78.7 B CPH 23 I O1 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 20.9 B CPH 23 I C9 CPH 1_555 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 56.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A O6 CPH 33 H O6 CPH 1 1 N 1 A O2 CPH 33 H O2 CPH 1 1 N 1 B O6 CPH 23 I O6 CPH 1 1 N 1 B O2 CPH 23 I O2 CPH 1 1 N 1 A C3' DA 8 WRONG HAND 1 B C3' DA 18 WRONG HAND 1 A C1' CPH 33 PLANAR 1 D B O1 C6 2GL CPH 1 23 1.41 1 C A O1 C6 2GL CPH 1 33 1.42 1 E B O1 C2 DDA CPH 1 23 1.42 1 F A O1 C2 DDA CPH 1 33 1.45 1 A B O2 H21 DC DG 6 13 1.59 1 A DT 2 0.096 SIDE CHAIN 1 A DA 7 0.078 SIDE CHAIN 1 B DT 12 0.097 SIDE CHAIN 1 B DG 14 0.057 SIDE CHAIN 1 2.62 0.30 108.30 110.92 A A A O4' C1' N1 DT DT DT 1 1 1 N 1 -3.62 0.60 122.90 119.28 A A A C6 C5 C7 DT DT DT 1 1 1 N 1 2.82 0.30 108.30 111.12 A A A O4' C1' N1 DT DT DT 2 2 2 N 1 -9.86 0.70 102.20 92.34 A A A C4' C3' C2' DG DG DG 3 3 3 N 1 17.59 1.20 119.70 137.29 A A A C3' O3' P DG DG DG 3 3 4 Y 1 18.06 1.60 120.90 138.96 A A A P O5' C5' DG DG DG 4 4 4 N 1 5.25 0.70 119.90 125.15 A A A N3 C2 N2 DG DG DG 4 4 4 N 1 9.64 1.20 119.70 129.34 A A A C3' O3' P DG DG DC 4 4 5 Y 1 -4.66 0.70 102.20 97.54 A A A C4' C3' C2' DC DC DC 5 5 5 N 1 3.18 0.30 108.30 111.48 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 10.98 1.60 120.90 131.88 A A A P O5' C5' DA DA DA 7 7 7 N 1 16.14 1.20 119.70 135.84 A A A C3' O3' P DA DA DA 7 7 8 Y 1 2.67 0.30 108.30 110.97 B B B O4' C1' N1 DT DT DT 11 11 11 N 1 -3.71 0.60 122.90 119.19 B B B C6 C5 C7 DT DT DT 11 11 11 N 1 2.88 0.30 108.30 111.18 B B B O4' C1' N1 DT DT DT 12 12 12 N 1 9.89 1.60 120.90 130.79 B B B P O5' C5' DG DG DG 13 13 13 N 1 -9.84 0.70 102.20 92.36 B B B C4' C3' C2' DG DG DG 13 13 13 N 1 17.27 1.20 119.70 136.97 B B B C3' O3' P DG DG DG 13 13 14 Y 1 17.59 1.60 120.90 138.49 B B B P O5' C5' DG DG DG 14 14 14 N 1 5.63 0.70 119.90 125.53 B B B N3 C2 N2 DG DG DG 14 14 14 N 1 8.61 1.20 119.70 128.31 B B B C3' O3' P DG DG DC 14 14 15 Y 1 -5.28 0.70 102.20 96.92 B B B C4' C3' C2' DC DC DC 15 15 15 N 1 3.28 0.30 108.30 111.58 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 2.26 0.30 108.30 110.56 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 16.08 1.20 119.70 135.78 B B B C3' O3' P DA DA DA 17 17 18 Y minimized average AVERAGE SOLUTION STRUCTURE OF D(TTGGCCAA)2 BOUND TO CHROMOMYCIN-A3 AND COBALT 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 5 N N 5 N N covale 1.455 both sing C 2GL 1 C O3 2GL 1_555 C 1GL 2 C C1 1GL 1_555 covale 1.453 both sing D 2GL 1 D O3 2GL 1_555 D 1GL 2 D C1 1GL 1_555 covale 1.422 both sing E DDA 1 E O3 DDA 1_555 E DDA 2 E C1 DDA 1_555 covale 1.433 both sing E DDA 2 E O3 DDA 1_555 E ERI 3 E C1 ERI 1_555 covale 1.425 both sing F DDA 1 F O3 DDA 1_555 F DDA 2 F C1 DDA 1_555 covale 1.440 both sing F DDA 2 F O3 DDA 1_555 F ERI 3 F C1 ERI 1_555 metalc 1.902 A CPH 33 H O9 CPH 1_555 A CO 41 G CO CO 1_555 metalc 1.931 A CPH 33 H O1 CPH 1_555 A CO 41 G CO CO 1_555 metalc 2.408 A CPH 33 H C9 CPH 1_555 A CO 41 G CO CO 1_555 metalc 2.754 A CPH 33 H C1 CPH 1_555 A CO 41 G CO CO 1_555 metalc 1.912 A CO 41 G CO CO 1_555 B CPH 23 I O9 CPH 1_555 metalc 1.863 A CO 41 G CO CO 1_555 B CPH 23 I O1 CPH 1_555 metalc 2.570 A CO 41 G CO CO 1_555 B CPH 23 I C9 CPH 1_555 metalc 2.765 A CO 41 G CO CO 1_555 B CPH 23 I C1 CPH 1_555 hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 B DA 18 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 B DA 18 B N6 DA 8 1_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 B DA 17 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 B DA 17 B N6 DA 7 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 16 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 16 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 16 B N4 DC 6 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 15 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 15 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 15 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 12 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 12 B O4 DT 2 1_555 hydrog WATSON-CRICK A DA 8 A N1 DA 8 1_555 B DT 11 B N3 DT 1 1_555 hydrog WATSON-CRICK A DA 8 A N6 DA 8 1_555 B DT 11 B O4 DT 1 1_555 DNA drug bound in the minor groove of DNA, DNA 1EKI PDB 1 1EKI 1 8 1EKI 1 8 1EKI A 1 1 8 11 18 1EKI 11 18 1EKI B 1 1 8 1 P 1