0.030941
0.000000
0.000000
0.000000
0.030941
0.000000
0.000000
0.000000
0.016088
0.000000
0.000000
0.000000
Neidle, S.
Sanderson, M.
Bennett, M.
Krah, A.
Wien, F.
Garman, E.
McKenna, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
32.210
32.210
62.257
C9 H13 Br N3 O7 P
386.093
n
5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C44 H36 N8 Ni
735.504
TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL
non-polymer
N
1
N
BR
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
N
N
7
N
C
N
8
N
C
N
9
N
O
N
10
N
N
N
11
N
C
N
12
N
N
N
13
N
C
N
14
N
C
N
15
N
C
N
16
R
C
N
17
N
O
N
18
R
C
N
19
S
C
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
Y
51
N
C
N
52
N
N
Y
53
N
N
Y
54
N
C
Y
55
N
N
Y
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
N
83
N
N
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
C
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
O
N
106
N
P
N
107
N
O
N
108
N
O
N
109
N
O
N
110
N
C
N
111
R
C
N
112
N
O
N
113
S
C
N
114
N
O
N
115
N
C
N
116
R
C
Y
117
N
N
Y
118
N
C
Y
119
N
N
Y
120
N
C
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
N
N
126
N
N
Y
127
N
C
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
O
N
143
N
P
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
C
N
148
R
C
N
149
N
O
N
150
S
C
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
N
N
155
N
C
N
156
N
O
N
157
N
N
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
MG
N
182
N
NI
Y
183
N
N
Y
184
N
C
Y
185
N
C
Y
186
N
C
Y
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
C
N
194
N
C
N
195
N
C
Y
196
N
N
Y
197
N
C
Y
198
N
C
Y
199
N
C
Y
200
N
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
N
N
206
N
C
N
207
N
C
N
208
N
C
Y
209
N
N
Y
210
N
C
Y
211
N
C
Y
212
N
C
Y
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
N
N
219
N
C
N
220
N
C
N
221
N
C
Y
222
N
N
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
Y
64
N
sing
Y
65
N
doub
N
66
N
sing
Y
67
N
doub
N
68
N
sing
N
69
N
sing
Y
70
N
sing
Y
71
N
doub
N
72
N
sing
Y
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
Y
132
N
sing
Y
133
N
sing
Y
134
N
doub
N
135
N
sing
Y
136
N
sing
N
137
N
sing
Y
138
N
doub
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
sing
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
sing
Y
217
N
sing
Y
218
N
doub
Y
219
N
sing
N
220
N
sing
Y
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
Y
240
N
sing
Y
241
N
sing
Y
242
N
doub
Y
243
N
sing
N
244
N
sing
Y
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
sing
Y
265
N
sing
Y
266
N
doub
Y
267
N
sing
N
268
N
sing
Y
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
9476
9481
10.1073/pnas.160271897
10920199
A DNA-porphyrin minor-groove complex at atomic resolution: the structural consequences of porphyrin ruffling.
2000
10.2210/pdb1em0/pdb
pdb_00001em0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
IMAGE PLATE
MARRESEARCH
IMAGE PLATE
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
SINGLE WAVELENGTH
M
x-ray
1
0.9189
1.0
0.9057
1.0
BM14
ESRF
0.9189
SYNCHROTRON
ESRF BEAMLINE BM14
X11
EMBL/DESY, HAMBURG
0.9057
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
1888.113
DNA (5'-D(*(CBR)P*CP*TP*AP*GP*G)-3')
4
syn
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
735.504
TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL
2
syn
non-polymer
18.015
water
214
nat
water
no
yes
(CBR)(DC)(DT)(DA)(DG)(DG)
CCTAGG
A,B,C,D
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.14
42.44
VAPOR DIFFUSION, SITTING DROP
7.0
1.25UM DNA, 1.25UM NI-PORPHYRIN, 50UM MGCL2, 5% MPD, 30MM SODIUM CACODYLATE, AGAINST 500UM RESERVOIR OF 55% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K
290
-16.632
1
19
B
7
A
6
-4.531
B_CBR7:DG6_A
1
20.648
0.267
-0.029
-0.196
-10.615
1
19
B
8
A
5
-2.919
B_DC8:DG5_A
2
-7.370
0.265
0.303
-0.158
1.049
1
20
B
9
A
4
10.087
B_DT9:DA4_A
3
-1.189
-0.011
-0.109
-0.085
0.010
1
20
B
10
A
3
0.226
B_DA10:DT3_A
4
-5.953
0.121
-0.040
-0.032
11.952
1
19
B
11
A
2
-0.076
B_DG11:DC2_A
5
-2.662
-0.103
0.210
-0.102
4.002
1
19
B
12
A
1
-1.459
B_DG12:CBR1_A
6
-5.716
-0.206
0.125
-0.133
-4.105
1
19
C
13
D
24
-1.447
C_CBR13:DG24_D
7
-5.729
0.178
0.142
-0.132
-11.622
1
19
C
14
D
23
0.046
C_DC14:DG23_D
8
-3.028
0.116
0.201
-0.104
0.906
1
20
C
15
D
22
0.965
C_DT15:DA22_D
9
-6.905
-0.101
-0.108
-0.036
-0.794
1
20
C
16
D
21
9.852
C_DA16:DT21_D
10
-0.759
0.040
-0.117
-0.088
3.247
31.391
B
B
7
8
-28.040
A
A
6
5
3.567
-14.610
-1.031
-0.230
BB_CBR7DC8:DG5DG6_AA
1
0.938
-1.799
27.844
2.616
2.100
3.258
33.886
B
B
8
9
26.373
A
A
5
4
3.303
14.827
1.596
0.212
BB_DC8DT9:DA4DG5_AA
2
4.688
-8.339
30.201
-2.176
-1.935
3.296
46.180
B
B
9
10
-6.772
A
A
4
3
3.484
-5.301
-1.081
1.372
BB_DT9DA10:DT3DA4_AA
3
0.777
-0.993
45.885
2.221
1.447
3.196
20.687
B
B
10
11
13.945
A
A
3
2
3.149
4.952
0.276
0.756
BB_DA10DG11:DC2DT3_AA
4
-2.058
5.795
19.987
-0.024
-1.653
3.646
42.802
B
B
11
12
0.300
A
A
2
1
3.608
0.219
-0.954
0.581
BB_DG11DG12:CBR1DC2_AA
5
-1.831
2.509
42.764
0.772
1.104
3.639
45.364
B
C
12
13
-1.706
A
D
1
24
3.608
-1.316
-0.011
-1.191
BC_DG12CBR13:DG24CBR1_DA
6
-0.147
0.190
45.345
-1.416
-0.001
3.622
42.965
C
C
13
14
-0.247
D
D
24
23
3.590
-0.181
0.952
0.583
CC_CBR13DC14:DG23DG24_DD
7
1.753
-2.394
42.931
0.815
-1.109
3.157
20.783
C
C
14
15
12.251
D
D
23
22
3.124
4.373
-0.240
0.787
CC_DC14DT15:DA22DG23_DD
8
2.857
-8.002
20.123
0.339
1.867
3.331
46.044
C
C
15
16
-5.481
D
D
22
21
3.490
-4.281
1.089
1.377
CC_DT15DA16:DT21DA22_DD
9
-1.081
1.383
45.844
2.145
-1.490
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-08-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-03-14
REL
REL
MG
MAGNESIUM ION
PNI
TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL
HOH
water
MO6
27
2
MG
MG
27
A
PNI
25
3
PNI
PNI
25
B
MO6
28
2
MG
MG
28
C
PNI
26
3
PNI
PNI
26
D
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
511
4
HOH
HOH
511
A
HOH
518
4
HOH
HOH
518
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
524
4
HOH
HOH
524
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
535
4
HOH
HOH
535
A
HOH
538
4
HOH
HOH
538
A
HOH
544
4
HOH
HOH
544
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
552
4
HOH
HOH
552
A
HOH
557
4
HOH
HOH
557
A
HOH
569
4
HOH
HOH
569
A
HOH
570
4
HOH
HOH
570
A
HOH
571
4
HOH
HOH
571
A
HOH
577
4
HOH
HOH
577
A
HOH
579
4
HOH
HOH
579
A
HOH
581
4
HOH
HOH
581
A
HOH
583
4
HOH
HOH
583
A
HOH
592
4
HOH
HOH
592
A
HOH
595
4
HOH
HOH
595
A
HOH
604
4
HOH
HOH
604
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
614
4
HOH
HOH
614
A
HOH
621
4
HOH
HOH
621
A
HOH
624
4
HOH
HOH
624
A
HOH
626
4
HOH
HOH
626
A
HOH
629
4
HOH
HOH
629
A
HOH
632
4
HOH
HOH
632
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
646
4
HOH
HOH
646
A
HOH
649
4
HOH
HOH
649
A
HOH
655
4
HOH
HOH
655
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
667
4
HOH
HOH
667
A
HOH
669
4
HOH
HOH
669
A
HOH
673
4
HOH
HOH
673
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
696
4
HOH
HOH
696
A
HOH
701
4
HOH
HOH
701
A
MO6
27
4
HOH
HOH
703
A
MO6
27
4
HOH
HOH
704
A
MO6
27
4
HOH
HOH
705
A
MO6
27
4
HOH
HOH
706
A
MO6
27
4
HOH
HOH
707
A
MO6
27
4
HOH
HOH
708
A
HOH
501
4
HOH
HOH
501
B
HOH
502
4
HOH
HOH
502
B
HOH
508
4
HOH
HOH
508
B
HOH
510
4
HOH
HOH
510
B
HOH
515
4
HOH
HOH
515
B
HOH
517
4
HOH
HOH
517
B
HOH
527
4
HOH
HOH
527
B
HOH
528
4
HOH
HOH
528
B
HOH
536
4
HOH
HOH
536
B
HOH
540
4
HOH
HOH
540
B
HOH
541
4
HOH
HOH
541
B
HOH
545
4
HOH
HOH
545
B
HOH
556
4
HOH
HOH
556
B
HOH
558
4
HOH
HOH
558
B
HOH
563
4
HOH
HOH
563
B
HOH
566
4
HOH
HOH
566
B
HOH
567
4
HOH
HOH
567
B
HOH
573
4
HOH
HOH
573
B
HOH
575
4
HOH
HOH
575
B
HOH
580
4
HOH
HOH
580
B
HOH
582
4
HOH
HOH
582
B
HOH
586
4
HOH
HOH
586
B
HOH
589
4
HOH
HOH
589
B
HOH
590
4
HOH
HOH
590
B
HOH
591
4
HOH
HOH
591
B
HOH
599
4
HOH
HOH
599
B
HOH
601
4
HOH
HOH
601
B
HOH
602
4
HOH
HOH
602
B
HOH
606
4
HOH
HOH
606
B
HOH
609
4
HOH
HOH
609
B
HOH
619
4
HOH
HOH
619
B
HOH
622
4
HOH
HOH
622
B
HOH
630
4
HOH
HOH
630
B
HOH
640
4
HOH
HOH
640
B
HOH
642
4
HOH
HOH
642
B
HOH
643
4
HOH
HOH
643
B
HOH
644
4
HOH
HOH
644
B
HOH
650
4
HOH
HOH
650
B
HOH
651
4
HOH
HOH
651
B
HOH
653
4
HOH
HOH
653
B
HOH
658
4
HOH
HOH
658
B
HOH
671
4
HOH
HOH
671
B
HOH
676
4
HOH
HOH
676
B
HOH
678
4
HOH
HOH
678
B
HOH
679
4
HOH
HOH
679
B
HOH
682
4
HOH
HOH
682
B
HOH
684
4
HOH
HOH
684
B
HOH
695
4
HOH
HOH
695
B
HOH
505
4
HOH
HOH
505
C
HOH
509
4
HOH
HOH
509
C
HOH
519
4
HOH
HOH
519
C
HOH
520
4
HOH
HOH
520
C
HOH
523
4
HOH
HOH
523
C
HOH
526
4
HOH
HOH
526
C
HOH
531
4
HOH
HOH
531
C
HOH
537
4
HOH
HOH
537
C
HOH
539
4
HOH
HOH
539
C
HOH
542
4
HOH
HOH
542
C
HOH
543
4
HOH
HOH
543
C
HOH
546
4
HOH
HOH
546
C
HOH
550
4
HOH
HOH
550
C
HOH
553
4
HOH
HOH
553
C
HOH
560
4
HOH
HOH
560
C
HOH
564
4
HOH
HOH
564
C
HOH
565
4
HOH
HOH
565
C
HOH
572
4
HOH
HOH
572
C
HOH
574
4
HOH
HOH
574
C
HOH
587
4
HOH
HOH
587
C
HOH
593
4
HOH
HOH
593
C
HOH
596
4
HOH
HOH
596
C
HOH
598
4
HOH
HOH
598
C
HOH
600
4
HOH
HOH
600
C
HOH
610
4
HOH
HOH
610
C
HOH
615
4
HOH
HOH
615
C
HOH
620
4
HOH
HOH
620
C
HOH
623
4
HOH
HOH
623
C
HOH
625
4
HOH
HOH
625
C
HOH
627
4
HOH
HOH
627
C
HOH
628
4
HOH
HOH
628
C
HOH
631
4
HOH
HOH
631
C
HOH
633
4
HOH
HOH
633
C
HOH
645
4
HOH
HOH
645
C
HOH
654
4
HOH
HOH
654
C
HOH
656
4
HOH
HOH
656
C
HOH
657
4
HOH
HOH
657
C
HOH
664
4
HOH
HOH
664
C
HOH
665
4
HOH
HOH
665
C
HOH
668
4
HOH
HOH
668
C
HOH
674
4
HOH
HOH
674
C
HOH
677
4
HOH
HOH
677
C
HOH
686
4
HOH
HOH
686
C
HOH
687
4
HOH
HOH
687
C
HOH
688
4
HOH
HOH
688
C
HOH
689
4
HOH
HOH
689
C
HOH
692
4
HOH
HOH
692
C
HOH
699
4
HOH
HOH
699
C
HOH
702
4
HOH
HOH
702
C
MO6
28
4
HOH
HOH
709
C
MO6
28
4
HOH
HOH
710
C
MO6
28
4
HOH
HOH
711
C
MO6
28
4
HOH
HOH
712
C
MO6
28
4
HOH
HOH
713
C
MO6
28
4
HOH
HOH
714
C
HOH
503
4
HOH
HOH
503
D
HOH
504
4
HOH
HOH
504
D
HOH
512
4
HOH
HOH
512
D
HOH
513
4
HOH
HOH
513
D
HOH
514
4
HOH
HOH
514
D
HOH
516
4
HOH
HOH
516
D
HOH
525
4
HOH
HOH
525
D
HOH
532
4
HOH
HOH
532
D
HOH
533
4
HOH
HOH
533
D
HOH
534
4
HOH
HOH
534
D
HOH
547
4
HOH
HOH
547
D
HOH
551
4
HOH
HOH
551
D
HOH
554
4
HOH
HOH
554
D
HOH
555
4
HOH
HOH
555
D
HOH
559
4
HOH
HOH
559
D
HOH
561
4
HOH
HOH
561
D
HOH
562
4
HOH
HOH
562
D
HOH
568
4
HOH
HOH
568
D
HOH
576
4
HOH
HOH
576
D
HOH
578
4
HOH
HOH
578
D
HOH
584
4
HOH
HOH
584
D
HOH
585
4
HOH
HOH
585
D
HOH
588
4
HOH
HOH
588
D
HOH
594
4
HOH
HOH
594
D
HOH
597
4
HOH
HOH
597
D
HOH
603
4
HOH
HOH
603
D
HOH
605
4
HOH
HOH
605
D
HOH
613
4
HOH
HOH
613
D
HOH
616
4
HOH
HOH
616
D
HOH
617
4
HOH
HOH
617
D
HOH
618
4
HOH
HOH
618
D
HOH
639
4
HOH
HOH
639
D
HOH
641
4
HOH
HOH
641
D
HOH
647
4
HOH
HOH
647
D
HOH
648
4
HOH
HOH
648
D
HOH
652
4
HOH
HOH
652
D
HOH
661
4
HOH
HOH
661
D
HOH
666
4
HOH
HOH
666
D
HOH
670
4
HOH
HOH
670
D
HOH
672
4
HOH
HOH
672
D
HOH
675
4
HOH
HOH
675
D
HOH
680
4
HOH
HOH
680
D
HOH
681
4
HOH
HOH
681
D
HOH
683
4
HOH
HOH
683
D
HOH
685
4
HOH
HOH
685
D
HOH
693
4
HOH
HOH
693
D
HOH
694
4
HOH
HOH
694
D
HOH
697
4
HOH
HOH
697
D
HOH
698
4
HOH
HOH
698
D
HOH
700
4
HOH
HOH
700
D
BRO
1
n
1
CBR
1
A
C
2
n
2
DC
2
A
T
3
n
3
DT
3
A
A
4
n
4
DA
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
BRO
7
n
1
CBR
7
B
C
8
n
2
DC
8
B
T
9
n
3
DT
9
B
A
10
n
4
DA
10
B
G
11
n
5
DG
11
B
G
12
n
6
DG
12
B
BRO
13
n
1
CBR
13
C
C
14
n
2
DC
14
C
T
15
n
3
DT
15
C
A
16
n
4
DA
16
C
G
17
n
5
DG
17
C
G
18
n
6
DG
18
C
BRO
19
n
1
CBR
19
D
C
20
n
2
DC
20
D
T
21
n
3
DT
21
D
A
22
n
4
DA
22
D
G
23
n
5
DG
23
D
G
24
n
6
DG
24
D
0.142
0.142
0.161
1990
5.4
37075
author_defined_assembly
4
tetrameric
A
HOH
703
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
704
I
O
HOH
1_555
178.6
A
HOH
703
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
705
I
O
HOH
1_555
88.9
A
HOH
704
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
705
I
O
HOH
1_555
89.9
A
HOH
703
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
706
I
O
HOH
1_555
87.7
A
HOH
704
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
706
I
O
HOH
1_555
93.6
A
HOH
705
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
706
I
O
HOH
1_555
176.5
A
HOH
703
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
707
I
O
HOH
1_555
90.7
A
HOH
704
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
707
I
O
HOH
1_555
89.8
A
HOH
705
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
707
I
O
HOH
1_555
88.2
A
HOH
706
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
707
I
O
HOH
1_555
91.1
A
HOH
703
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
708
I
O
HOH
1_555
91.7
A
HOH
704
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
708
I
O
HOH
1_555
87.6
A
HOH
705
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
708
I
O
HOH
1_555
84.9
A
HOH
706
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
708
I
O
HOH
1_555
95.9
A
HOH
707
I
O
HOH
1_555
A
MG
27
E
MG
MG
1_555
A
HOH
708
I
O
HOH
1_555
172.7
C
HOH
709
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
710
K
O
HOH
1_555
178.2
C
HOH
709
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
711
K
O
HOH
1_555
92.4
C
HOH
710
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
711
K
O
HOH
1_555
89.0
C
HOH
709
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
712
K
O
HOH
1_555
91.0
C
HOH
710
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
712
K
O
HOH
1_555
87.4
C
HOH
711
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
712
K
O
HOH
1_555
171.5
C
HOH
709
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
713
K
O
HOH
1_555
85.7
C
HOH
710
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
713
K
O
HOH
1_555
95.5
C
HOH
711
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
713
K
O
HOH
1_555
91.1
C
HOH
712
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
713
K
O
HOH
1_555
97.0
C
HOH
709
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
714
K
O
HOH
1_555
88.4
C
HOH
710
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
714
K
O
HOH
1_555
90.5
C
HOH
711
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
714
K
O
HOH
1_555
87.7
C
HOH
712
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
714
K
O
HOH
1_555
84.6
C
HOH
713
K
O
HOH
1_555
C
MG
28
G
MG
MG
1_555
C
HOH
714
K
O
HOH
1_555
173.9
A
CBR
1
A
CBR
1
DC
B
CBR
7
B
CBR
1
DC
C
CBR
13
C
CBR
1
DC
D
CBR
19
D
CBR
1
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
D
O
O
HOH
HOH
650
551
1.49
1
B
B
O
O
HOH
HOH
556
606
1.85
1
B
D
O
O
HOH
HOH
650
514
1.99
1
D
D
O
O
HOH
HOH
584
685
2.03
1
D
D
OP2
O
DG
HOH
23
693
2.08
1
B
B
O
O
HOH
HOH
556
695
2.14
1
A
A
O
O
HOH
HOH
690
696
2.16
1
A
DC
2
0.113
SIDE CHAIN
1
A
DA
4
0.056
SIDE CHAIN
1
A
DG
5
0.068
SIDE CHAIN
1
B
DA
10
0.067
SIDE CHAIN
1
B
DG
12
0.089
SIDE CHAIN
1
C
DC
14
0.098
SIDE CHAIN
1
C
DG
17
0.069
SIDE CHAIN
1
D
DA
22
0.077
SIDE CHAIN
1
D
DG
24
0.083
SIDE CHAIN
1
10.13
1.20
119.70
129.83
A
A
A
C3'
O3'
P
CBR
CBR
DC
1
1
2
Y
1
-5.12
0.60
125.10
119.98
A
A
A
C6
N1
C2
DG
DG
DG
5
5
5
N
1
4.96
0.50
128.60
133.56
A
A
A
N3
C4
C5
DG
DG
DG
5
5
5
N
1
-5.05
0.60
118.80
113.75
A
A
A
C4
C5
C6
DG
DG
DG
5
5
5
N
1
4.98
0.50
111.50
116.48
A
A
A
C5
C6
N1
DG
DG
DG
5
5
5
N
1
-4.59
0.40
105.40
100.81
A
A
A
N9
C4
C5
DG
DG
DG
5
5
5
N
1
-3.74
0.60
128.60
124.86
A
A
A
C5
C6
O6
DG
DG
DG
5
5
5
N
1
-6.75
1.00
110.10
103.35
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
1
12.03
2.00
112.30
124.33
A
A
A
C4'
C3'
O3'
DG
DG
DG
6
6
6
N
1
-17.17
2.50
109.40
92.23
A
A
A
C2'
C3'
O3'
DG
DG
DG
6
6
6
N
1
16.36
0.90
103.10
119.46
A
A
A
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
1
-9.93
0.80
102.40
92.47
A
A
A
C3'
C2'
C1'
DG
DG
DG
6
6
6
N
1
12.88
1.40
114.30
127.18
A
A
A
N9
C1'
C2'
DG
DG
DG
6
6
6
N
1
-5.35
0.70
108.00
102.65
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
5.43
0.60
125.10
130.53
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
-5.40
0.60
123.90
118.50
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
-2.75
0.40
105.40
102.65
A
A
A
N9
C4
C5
DG
DG
DG
6
6
6
N
1
3.80
0.60
119.90
123.70
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
1
15.76
1.20
119.70
135.46
B
B
B
C3'
O3'
P
CBR
CBR
DC
7
7
8
A
A
A
Y
1
-9.00
1.20
119.70
110.70
B
B
B
C3'
O3'
P
CBR
CBR
DC
7
7
8
B
B
B
Y
1
13.70
1.60
120.90
134.60
B
B
B
P
O5'
C5'
DC
DC
DC
8
8
8
A
A
A
N
1
7.46
1.20
115.70
123.16
B
B
B
C5'
C4'
C3'
DC
DC
DC
8
8
8
A
N
1
3.15
0.50
106.80
109.95
B
B
B
O4'
C1'
C2'
DC
DC
DC
8
8
8
N
1
2.63
0.40
120.30
122.93
B
B
B
C6
N1
C2
DC
DC
DC
8
8
8
N
1
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
3.18
0.30
108.30
111.48
B
B
B
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
-3.69
0.40
106.40
102.71
B
B
B
C8
N9
C4
DG
DG
DG
11
11
11
N
1
3.52
0.40
105.40
108.92
B
B
B
N9
C4
C5
DG
DG
DG
11
11
11
N
1
9.27
1.20
119.70
128.97
C
C
C
C3'
O3'
P
CBR
CBR
DC
13
13
14
Y
1
-6.43
1.00
110.10
103.67
C
C
C
C1'
O4'
C4'
DC
DC
DC
14
14
14
N
1
-4.55
0.70
108.00
103.45
C
C
C
O4'
C1'
N1
DC
DC
DC
14
14
14
N
1
-4.31
0.70
119.20
114.89
C
C
C
N1
C2
N3
DC
DC
DC
14
14
14
N
1
-3.48
0.50
110.60
107.12
C
C
C
C2
N3
C4
DA
DA
DA
16
16
16
N
1
-4.57
0.60
125.10
120.53
C
C
C
C6
N1
C2
DG
DG
DG
17
17
17
N
1
3.33
0.50
111.50
114.83
C
C
C
C5
C6
N1
DG
DG
DG
17
17
17
N
1
-4.75
0.60
128.60
123.85
C
C
C
C5
C6
O6
DG
DG
DG
17
17
17
N
1
-6.42
0.80
109.40
102.98
C
C
C
O5'
C5'
C4'
DG
DG
DG
18
18
18
N
1
-10.12
1.60
120.90
110.78
C
C
C
P
O5'
C5'
DG
DG
DG
18
18
18
N
1
4.01
0.60
106.00
110.01
C
C
C
O4'
C4'
C3'
DG
DG
DG
18
18
18
N
1
10.52
0.90
103.10
113.62
C
C
C
C4'
C3'
C2'
DG
DG
DG
18
18
18
N
1
-10.59
0.80
102.40
91.81
C
C
C
C3'
C2'
C1'
DG
DG
DG
18
18
18
N
1
-15.92
0.80
105.90
89.98
C
C
C
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
1
10.60
1.40
114.30
124.90
C
C
C
N9
C1'
C2'
DG
DG
DG
18
18
18
N
1
-5.38
0.70
108.00
102.62
C
C
C
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
5.90
0.60
125.10
131.00
C
C
C
C6
N1
C2
DG
DG
DG
18
18
18
N
1
-4.92
0.60
123.90
118.98
C
C
C
N1
C2
N3
DG
DG
DG
18
18
18
N
1
3.35
0.50
104.30
107.65
C
C
C
C5
N7
C8
DG
DG
DG
18
18
18
N
1
4.23
0.40
106.40
110.63
C
C
C
C8
N9
C4
DG
DG
DG
18
18
18
N
1
-5.41
0.40
105.40
99.99
C
C
C
N9
C4
C5
DG
DG
DG
18
18
18
N
1
5.10
0.60
126.00
131.10
C
C
C
N3
C4
N9
DG
DG
DG
18
18
18
N
1
5.95
0.60
119.90
125.85
C
C
C
N1
C6
O6
DG
DG
DG
18
18
18
N
1
-4.94
0.60
128.60
123.66
C
C
C
C5
C6
O6
DG
DG
DG
18
18
18
N
1
-10.52
1.30
126.50
115.98
C
C
C
C4
N9
C1'
DG
DG
DG
18
18
18
N
1
12.17
1.20
119.70
131.87
D
D
D
C3'
O3'
P
CBR
CBR
DC
19
19
20
C
C
C
Y
1
11.51
1.60
120.90
132.41
D
D
D
P
O5'
C5'
DC
DC
DC
20
20
20
C
C
C
N
1
10.44
1.20
115.70
126.14
D
D
D
C5'
C4'
C3'
DC
DC
DC
20
20
20
C
N
1
4.04
0.40
120.30
124.34
D
D
D
C6
N1
C2
DC
DC
DC
20
20
20
N
1
3.97
0.50
117.40
121.37
D
D
D
C4
C5
C6
DC
DC
DC
20
20
20
N
1
3.83
0.60
118.90
122.73
D
D
D
N1
C2
O2
DC
DC
DC
20
20
20
N
1
-6.53
1.00
110.10
103.57
D
D
D
C1'
O4'
C4'
DT
DT
DT
21
21
21
N
1
-6.09
0.80
102.40
96.31
D
D
D
C3'
C2'
C1'
DT
DT
DT
21
21
21
N
1
-4.25
0.60
118.00
113.75
D
D
D
C4
C5
C6
DT
DT
DT
21
21
21
N
1
4.28
0.60
125.10
129.38
D
D
D
C6
N1
C2
DG
DG
DG
23
23
23
N
1
3.25
0.50
111.90
115.15
D
D
D
C2
N3
C4
DG
DG
DG
24
24
24
N
1
A
A
O3'
P
CBR
DC
1
2
-0.098
0.012
1.607
1.509
Y
1
A
A
C5'
C4'
DC
DC
2
2
-0.068
0.011
1.509
1.441
N
1
A
A
N3
C4
DC
DC
2
2
-0.052
0.007
1.335
1.283
N
1
A
A
C5'
C4'
DT
DT
3
3
-0.079
0.011
1.509
1.430
N
1
A
A
C5
C7
DT
DT
3
3
0.039
0.006
1.496
1.535
N
1
A
A
C2'
C1'
DA
DA
4
4
0.061
0.010
1.519
1.580
N
1
A
A
C5
N7
DA
DA
4
4
-0.052
0.006
1.388
1.336
N
1
A
A
N9
C4
DA
DA
4
4
-0.040
0.006
1.374
1.334
N
1
A
A
N1
C2
DG
DG
5
5
0.091
0.008
1.373
1.464
N
1
A
A
N3
C4
DG
DG
5
5
-0.103
0.007
1.350
1.247
N
1
A
A
C4
C5
DG
DG
5
5
0.050
0.007
1.379
1.429
N
1
A
A
N7
C8
DG
DG
5
5
-0.037
0.006
1.305
1.268
N
1
A
A
N9
C4
DG
DG
5
5
0.085
0.008
1.375
1.460
N
1
A
A
C4'
C3'
DG
DG
6
6
-0.347
0.010
1.521
1.174
N
1
A
A
C3'
C2'
DG
DG
6
6
0.124
0.012
1.518
1.642
N
1
A
A
O4'
C1'
DG
DG
6
6
0.084
0.011
1.420
1.504
N
1
A
A
O4'
C4'
DG
DG
6
6
0.095
0.009
1.449
1.544
N
1
A
A
O3'
C3'
DG
DG
6
6
0.147
0.013
1.435
1.582
N
1
A
A
C2
N3
DG
DG
6
6
0.071
0.008
1.323
1.394
N
1
A
A
N3
C4
DG
DG
6
6
-0.067
0.007
1.350
1.283
N
1
A
A
C6
N1
DG
DG
6
6
-0.048
0.007
1.391
1.343
N
1
A
A
N9
C4
DG
DG
6
6
0.066
0.008
1.375
1.441
N
1
A
A
C2
N2
DG
DG
6
6
-0.070
0.010
1.341
1.271
N
1
B
B
O3'
P
CBR
DC
7
8
-0.117
0.012
1.607
1.490
A
A
Y
1
B
B
O3'
P
CBR
DC
7
8
0.081
0.012
1.607
1.688
B
B
Y
1
B
B
P
OP1
DC
DC
8
8
-0.169
0.017
1.485
1.316
A
A
N
1
B
B
P
OP2
DC
DC
8
8
0.140
0.017
1.485
1.625
A
A
N
1
B
B
P
O5'
DC
DC
8
8
-0.115
0.010
1.593
1.478
B
B
N
1
B
B
O5'
C5'
DC
DC
8
8
-0.175
0.025
1.418
1.243
A
A
N
1
B
B
C5'
C4'
DC
DC
8
8
-0.382
0.011
1.509
1.127
A
N
1
B
B
C5'
C4'
DC
DC
8
8
0.223
0.007
1.512
1.735
B
N
1
B
B
O3'
C3'
DC
DC
8
8
-0.090
0.006
1.419
1.329
N
1
B
B
C2
O2
DC
DC
8
8
-0.069
0.009
1.240
1.171
N
1
B
B
N3
C4
DC
DC
8
8
0.042
0.007
1.335
1.377
N
1
B
B
P
OP2
DT
DT
9
9
-0.104
0.017
1.485
1.381
N
1
B
B
C5'
C4'
DT
DT
9
9
0.043
0.007
1.512
1.555
N
1
B
B
C3'
C2'
DT
DT
9
9
-0.099
0.008
1.516
1.417
N
1
B
B
C6
N1
DT
DT
9
9
-0.043
0.007
1.378
1.335
N
1
B
B
C2
O2
DT
DT
9
9
-0.053
0.008
1.220
1.167
N
1
B
B
C5'
C4'
DA
DA
10
10
-0.069
0.011
1.509
1.440
N
1
B
B
C4
C5
DA
DA
10
10
-0.060
0.007
1.383
1.323
N
1
B
B
N7
C8
DA
DA
10
10
-0.047
0.007
1.311
1.264
N
1
B
B
N3
C4
DG
DG
11
11
0.077
0.007
1.350
1.427
N
1
B
B
N7
C8
DG
DG
11
11
-0.050
0.006
1.305
1.255
N
1
B
B
N1
C2
DG
DG
12
12
0.073
0.008
1.373
1.446
N
1
B
B
C6
N1
DG
DG
12
12
-0.052
0.007
1.391
1.339
N
1
B
B
C5
N7
DG
DG
12
12
0.041
0.006
1.388
1.429
N
1
C
C
O3'
P
CBR
DC
13
14
-0.119
0.012
1.607
1.488
Y
1
C
C
P
OP2
DC
DC
14
14
0.134
0.017
1.485
1.619
N
1
C
C
C5'
C4'
DC
DC
14
14
-0.078
0.011
1.509
1.431
N
1
C
C
C2'
C1'
DC
DC
14
14
-0.060
0.010
1.518
1.458
N
1
C
C
N3
C4
DC
DC
14
14
-0.043
0.007
1.335
1.292
N
1
C
C
C5'
C4'
DT
DT
15
15
-0.068
0.011
1.509
1.441
N
1
C
C
O3'
C3'
DA
DA
16
16
-0.042
0.006
1.419
1.377
N
1
C
C
C5
N7
DA
DA
16
16
-0.043
0.006
1.388
1.345
N
1
C
C
N1
C2
DG
DG
17
17
0.072
0.008
1.373
1.445
N
1
C
C
C2
N3
DG
DG
17
17
-0.063
0.008
1.323
1.260
N
1
C
C
N7
C8
DG
DG
17
17
-0.045
0.006
1.305
1.260
N
1
C
C
O5'
C5'
DG
DG
18
18
0.162
0.016
1.440
1.602
N
1
C
C
C5'
C4'
DG
DG
18
18
0.151
0.007
1.512
1.663
N
1
C
C
C4'
C3'
DG
DG
18
18
-0.310
0.010
1.521
1.211
N
1
C
C
C2'
C1'
DG
DG
18
18
0.274
0.010
1.519
1.793
N
1
C
C
N3
C4
DG
DG
18
18
-0.078
0.007
1.350
1.272
N
1
C
C
C4
C5
DG
DG
18
18
0.059
0.007
1.379
1.438
N
1
C
C
C6
N1
DG
DG
18
18
-0.074
0.007
1.391
1.317
N
1
C
C
C8
N9
DG
DG
18
18
-0.105
0.007
1.374
1.269
N
1
C
C
N9
C4
DG
DG
18
18
0.066
0.008
1.375
1.441
N
1
C
C
C2
N2
DG
DG
18
18
-0.079
0.010
1.341
1.262
N
1
D
D
P
OP2
DC
DC
20
20
0.106
0.017
1.485
1.591
C
C
N
1
D
D
O5'
C5'
DC
DC
20
20
0.142
0.016
1.440
1.582
C
C
N
1
D
D
C5'
C4'
DC
DC
20
20
-0.480
0.011
1.509
1.029
C
N
1
D
D
C5'
C4'
DC
DC
20
20
0.167
0.007
1.512
1.679
D
N
1
D
D
C2'
C1'
DC
DC
20
20
-0.088
0.010
1.518
1.430
N
1
D
D
O3'
C3'
DC
DC
20
20
-0.060
0.006
1.419
1.359
N
1
D
D
C2
O2
DC
DC
20
20
-0.060
0.009
1.240
1.180
N
1
D
D
C2
N3
DC
DC
20
20
0.088
0.008
1.353
1.441
N
1
D
D
P
OP2
DT
DT
21
21
-0.123
0.017
1.485
1.362
N
1
D
D
C5'
C4'
DT
DT
21
21
0.073
0.007
1.512
1.585
N
1
D
D
C4'
C3'
DT
DT
21
21
-0.097
0.010
1.521
1.424
N
1
D
D
O4'
C4'
DT
DT
21
21
0.061
0.009
1.449
1.510
N
1
D
D
C5
C6
DT
DT
21
21
0.060
0.007
1.339
1.399
N
1
D
D
C6
N1
DT
DT
21
21
-0.045
0.007
1.378
1.333
N
1
D
D
C2
O2
DT
DT
21
21
-0.050
0.008
1.220
1.170
N
1
D
D
C2
N3
DA
DA
22
22
0.062
0.009
1.331
1.393
N
1
D
D
C4
C5
DA
DA
22
22
-0.048
0.007
1.383
1.335
N
1
D
D
C5
C6
DA
DA
22
22
0.061
0.009
1.406
1.467
N
1
D
D
N7
C8
DA
DA
22
22
-0.073
0.007
1.311
1.238
N
1
D
D
N3
C4
DG
DG
23
23
0.044
0.007
1.350
1.394
N
1
B
B
O
O
HOH
HOH
679
682
2.09
1_555
3_655
1
A
B
O
O
HOH
HOH
662
609
2.16
1_555
3_655
FULL-MATRIX LEAST-SQUARES
0.172
0.152
0.151
0.152
0.9
6.
3867
2323
42874
37075
0
5
RANDOM
1
THROUGHOUT
4
2
NO RESTRAINTS USED, THEREFORE THE RMSD DEVIATIONS ABOVE DO NOT HAVE ANY MEANING
0.9
6.
202
1170
196
772
0
0.86
30.
1EM0
45197
4
2
0.021
1,2
8
93
0.124
0.9
1.0
8
70.3
model building
CCP4
MAD PROGS
refinement
SHELXL-97
data reduction
DENZO
data scaling
SCALEPACK
phasing
CCP4
(MAD PROGS)
COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
covale
1.509
both
A
CBR
1
A
O3'
CBR
1
1_555
A
DC
2
A
P
DC
2
1_555
covale
1.490
both
A
A
B
CBR
7
B
O3'
CBR
1
1_555
B
DC
8
B
P
DC
2
1_555
covale
1.688
both
B
B
B
CBR
7
B
O3'
CBR
1
1_555
B
DC
8
B
P
DC
2
1_555
covale
1.488
both
C
CBR
13
C
O3'
CBR
1
1_555
C
DC
14
C
P
DC
2
1_555
covale
1.636
both
D
D
D
CBR
19
D
O3'
CBR
1
1_555
D
DC
20
D
P
DC
2
1_555
covale
1.634
both
C
C
D
CBR
19
D
O3'
CBR
1
1_555
D
DC
20
D
P
DC
2
1_555
metalc
2.075
A
MG
27
E
MG
MG
1_555
A
HOH
703
I
O
HOH
1_555
metalc
2.013
A
MG
27
E
MG
MG
1_555
A
HOH
704
I
O
HOH
1_555
metalc
2.099
A
MG
27
E
MG
MG
1_555
A
HOH
705
I
O
HOH
1_555
metalc
2.065
A
MG
27
E
MG
MG
1_555
A
HOH
706
I
O
HOH
1_555
metalc
2.129
A
MG
27
E
MG
MG
1_555
A
HOH
707
I
O
HOH
1_555
metalc
2.122
A
MG
27
E
MG
MG
1_555
A
HOH
708
I
O
HOH
1_555
metalc
2.042
C
MG
28
G
MG
MG
1_555
C
HOH
709
K
O
HOH
1_555
metalc
2.022
C
MG
28
G
MG
MG
1_555
C
HOH
710
K
O
HOH
1_555
metalc
2.080
C
MG
28
G
MG
MG
1_555
C
HOH
711
K
O
HOH
1_555
metalc
2.146
C
MG
28
G
MG
MG
1_555
C
HOH
712
K
O
HOH
1_555
metalc
2.026
C
MG
28
G
MG
MG
1_555
C
HOH
713
K
O
HOH
1_555
metalc
2.115
C
MG
28
G
MG
MG
1_555
C
HOH
714
K
O
HOH
1_555
hydrog
WATSON-CRICK
A
CBR
1
A
N3
CBR
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
CBR
1
A
N4
CBR
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
CBR
1
A
O2
CBR
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
11
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
11
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
11
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
10
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
10
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
9
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
9
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
8
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
8
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
8
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
CBR
7
B
N3
CBR
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
CBR
7
B
O2
CBR
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
CBR
7
B
N4
CBR
1
1_555
hydrog
WATSON-CRICK
C
CBR
13
C
N3
CBR
1
1_555
D
DG
24
D
N1
DG
6
1_555
hydrog
WATSON-CRICK
C
CBR
13
C
N4
CBR
1
1_555
D
DG
24
D
O6
DG
6
1_555
hydrog
WATSON-CRICK
C
CBR
13
C
O2
CBR
1
1_555
D
DG
24
D
N2
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N3
DC
2
1_555
D
DG
23
D
N1
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N4
DC
2
1_555
D
DG
23
D
O6
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
14
C
O2
DC
2
1_555
D
DG
23
D
N2
DG
5
1_555
hydrog
WATSON-CRICK
C
DT
15
C
N3
DT
3
1_555
D
DA
22
D
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
15
C
O4
DT
3
1_555
D
DA
22
D
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DA
16
C
N1
DA
4
1_555
D
DT
21
D
N3
DT
3
1_555
hydrog
WATSON-CRICK
C
DA
16
C
N6
DA
4
1_555
D
DT
21
D
O4
DT
3
1_555
DNA
PORPHYRIN, RUFFLING, DNA DISTORTION, GROOVE BINDING, DNA
1EM0
PDB
1
1EM0
1
6
1EM0
1
6
1EM0
A
1
1
6
7
12
1EM0
7
12
1EM0
B
1
1
6
13
18
1EM0
13
18
1EM0
C
1
1
6
19
24
1EM0
19
24
1EM0
D
1
1
6
BINDING SITE FOR RESIDUE MG A 27
A
MG
27
Software
6
BINDING SITE FOR RESIDUE MG C 28
C
MG
28
Software
6
BINDING SITE FOR RESIDUE PNI B 25
B
PNI
25
Software
16
BINDING SITE FOR RESIDUE PNI D 26
D
PNI
26
Software
13
A
HOH
703
I
HOH
6
1_555
A
HOH
704
I
HOH
6
1_555
A
HOH
705
I
HOH
6
1_555
A
HOH
706
I
HOH
6
1_555
A
HOH
707
I
HOH
6
1_555
A
HOH
708
I
HOH
6
1_555
C
HOH
709
K
HOH
6
1_555
C
HOH
710
K
HOH
6
1_555
C
HOH
711
K
HOH
6
1_555
C
HOH
712
K
HOH
6
1_555
C
HOH
713
K
HOH
6
1_555
C
HOH
714
K
HOH
6
1_555
A
DC
2
A
DC
2
16
4_564
A
DT
3
A
DT
3
16
4_564
A
DA
4
A
DA
4
16
4_564
A
DG
5
A
DG
5
16
4_564
A
DG
6
A
DG
6
16
1_555
A
DG
6
A
DG
6
16
4_564
A
HOH
662
I
HOH
16
4_564
B
CBR
7
B
CBR
1
16
1_555
B
DC
8
B
DC
2
16
1_555
B
DT
9
B
DT
3
16
4_564
B
DA
10
B
DA
4
16
4_564
B
DG
12
B
DG
6
16
4_564
C
CBR
13
C
CBR
1
16
4_564
D
DA
22
D
DA
4
16
2_654
D
HOH
555
L
HOH
16
2_654
D
HOH
605
L
HOH
16
2_654
A
CBR
1
A
CBR
1
13
3_555
B
DA
10
B
DA
4
13
2_655
C
DC
14
C
DC
2
13
3_555
C
DT
15
C
DT
3
13
3_555
C
DA
16
C
DA
4
13
3_555
C
DG
17
C
DG
5
13
3_555
C
DG
18
C
DG
6
13
1_555
C
DG
18
C
DG
6
13
3_555
D
CBR
19
D
CBR
1
13
1_555
D
DC
20
D
DC
2
13
1_555
D
DT
21
D
DT
3
13
3_555
D
DA
22
D
DA
4
13
3_555
D
DG
24
D
DG
6
13
3_555
76
tetragonal
P 41