0.001969 0.000000 0.000000 0.000000 0.001969 0.000000 0.000000 0.000000 0.001245 0.00000 0.00000 0.00000 Lancaster, L. Culver, G.M. Yusupova, G.Z. Cate, J.H. Yuspov, M.M. Noller, H.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 508 508 803 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 R C N 148 N C N 149 N O N 150 N C N 151 N S N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 R C N 171 N O N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 N C N 239 N C N 240 N O N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N N Y 254 N C Y 255 N C Y 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N O N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 R C N 416 N O N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N N Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C N 466 N O N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N O N 480 N P N 481 N O N 482 N O N 483 N O N 484 N C N 485 R C N 486 N O N 487 S C N 488 N O N 489 R C N 490 N O N 491 R C N 492 N N N 493 N C N 494 N O N 495 N N N 496 N C N 497 N O N 498 N C N 499 N C N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N N N 514 S C N 515 N C N 516 N O N 517 N C N 518 N C N 519 N C N 520 N O N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing Y 182 N sing Y 183 N sing Y 184 N doub N 185 N sing Y 186 N sing N 187 N sing Y 188 N doub N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing Y 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N doub Y 435 N sing Y 436 N sing N 437 N sing Y 438 N sing Y 439 N doub N 440 N sing Y 441 N doub N 442 N sing Y 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing Y 458 N doub Y 459 N sing Y 460 N sing N 461 N sing Y 462 N doub N 463 N sing Y 464 N doub N 465 N sing Y 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N doub N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N doub N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing UK RNA RNARFU 2122 1355-8382 6 717 729 10.1017/S1355838200000303 10836793 The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography. 2000 10.2210/pdb1emi/pdb pdb_00001emi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 105 1 CCD ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.1051 1.0 ALS 1.1051 SYNCHROTRON ALS COORDINATES FOR THERMUS THERMOPHILUS 16S RRNA BUT SEQUENCE AND NUMBERING IS THAT OF E.COLI 16S RRNA 51921.684 16S RIBOSOMAL RNA 1 nat polymer 15624.214 RIBOSOMAL PROTEIN S8 1 nat polymer no no GCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAG UCUCGUACGAAGACUGACGCUCAGGUGCGUCGACUUGGAGGUUGUGCUUCGUGGCUUCCGGAGCUAACGCGUUAAGUCGA C GCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAG UCUCGUACGAAGACUGACGCUCAGGUGCGUCGACUUGGAGGUUGUGCUUCGUGGCUUCCGGAGCUAACGCGUUAAGUCGA C B polyribonucleotide no no TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHH IRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHH IRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermus sample 274 Thermus thermophilus Thermus sample 274 Thermus thermophilus 5 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2000-06-12 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession P ATOMS ONLY CA ATOMS ONLY X-ray crystal structures of 70S ribosome functional complexes RCSB Y RCSB 2000-03-16 REL G 577 n 1 G 577 B C 578 n 2 C 578 B A 579 n 3 A 579 B C 580 n 4 C 580 B G 581 n 5 G 581 B C 582 n 6 C 582 B A 583 n 7 A 583 B G 584 n 8 G 584 B G 585 n 9 G 585 B C 586 n 10 C 586 B G 587 n 11 G 587 B G 588 n 12 G 588 B U 589 n 13 U 589 B U 590 n 14 U 590 B U 591 n 15 U 591 B G 592 n 16 G 592 B U 593 n 17 U 593 B U 594 n 18 U 594 B A 595 n 19 A 595 B A 596 n 20 A 596 B G 597 n 21 G 597 B U 598 n 22 U 598 B C 599 n 23 C 599 B A 600 n 24 A 600 B G 601 n 25 G 601 B A 602 n 26 A 602 B U 603 n 27 U 603 B G 604 n 28 G 604 B U 605 n 29 U 605 B G 606 n 30 G 606 B A 607 n 31 A 607 B A 608 n 32 A 608 B A 609 n 33 A 609 B U 610 n 34 U 610 B C 611 n 35 C 611 B C 612 n 36 C 612 B C 613 n 37 C 613 B C 614 n 38 C 614 B G 615 n 39 G 615 B G 616 n 40 G 616 B G 617 n 41 G 617 B C 618 n 42 C 618 B U 619 n 43 U 619 B C 620 n 44 C 620 B A 621 n 45 A 621 B A 622 n 46 A 622 B C 623 n 47 C 623 B C 624 n 48 C 624 B U 625 n 49 U 625 B G 626 n 50 G 626 B G 627 n 51 G 627 B G 628 n 52 G 628 B A 629 n 53 A 629 B A 630 n 54 A 630 B C 631 n 55 C 631 B U 632 n 56 U 632 B G 633 n 57 G 633 B C 634 n 58 C 634 B A 635 n 59 A 635 B U 636 n 60 U 636 B C 637 n 61 C 637 B U 638 n 62 U 638 B G 639 n 63 G 639 B A 640 n 64 A 640 B U 641 n 65 U 641 B A 642 n 66 A 642 B C 643 n 67 C 643 B U 644 n 68 U 644 B G 645 n 69 G 645 B G 646 n 70 G 646 B C 647 n 71 C 647 B A 648 n 72 A 648 B A 649 n 73 A 649 B G 650 n 74 G 650 B C 651 n 75 C 651 B U 652 n 76 U 652 B U 653 n 77 U 653 B G 654 n 78 G 654 B A 655 n 79 A 655 B G 656 n 80 G 656 B U 657 n 81 U 657 B C 658 n 82 C 658 B U 659 n 83 U 659 B C 660 n 84 C 660 B G 661 n 85 G 661 B U 662 n 86 U 662 B A 743 n 87 A 743 B C 744 n 88 C 744 B G 745 n 89 G 745 B A 746 n 90 A 746 B A 747 n 91 A 747 B G 748 n 92 G 748 B A 749 n 93 A 749 B C 750 n 94 C 750 B U 751 n 95 U 751 B G 752 n 96 G 752 B A 753 n 97 A 753 B C 754 n 98 C 754 B G 755 n 99 G 755 B C 756 n 100 C 756 B U 757 n 101 U 757 B C 758 n 102 C 758 B A 759 n 103 A 759 B G 760 n 104 G 760 B G 761 n 105 G 761 B U 762 n 106 U 762 B G 763 n 107 G 763 B C 764 n 108 C 764 B G 821 n 109 G 821 B U 822 n 110 U 822 B C 823 n 111 C 823 B G 824 n 112 G 824 B A 825 n 113 A 825 B C 826 n 114 C 826 B U 827 n 115 U 827 B U 828 n 116 U 828 B G 829 n 117 G 829 B G 830 n 118 G 830 B A 831 n 119 A 831 B G 832 n 120 G 832 B G 833 n 121 G 833 B U 834 n 122 U 834 B U 835 n 123 U 835 B G 836 n 124 G 836 B U 837 n 125 U 837 B G 838 n 126 G 838 B C 841 n 127 C 841 B U 842 n 128 U 842 B U 843 n 129 U 843 B C 848 n 130 C 848 B G 849 n 131 G 849 B U 850 n 132 U 850 B G 851 n 133 G 851 B G 852 n 134 G 852 B C 853 n 135 C 853 B U 854 n 136 U 854 B U 855 n 137 U 855 B C 856 n 138 C 856 B C 857 n 139 C 857 B G 858 n 140 G 858 B G 859 n 141 G 859 B A 860 n 142 A 860 B G 861 n 143 G 861 B C 862 n 144 C 862 B U 863 n 145 U 863 B A 864 n 146 A 864 B A 865 n 147 A 865 B C 866 n 148 C 866 B G 867 n 149 G 867 B C 868 n 150 C 868 B G 869 n 151 G 869 B U 870 n 152 U 870 B U 871 n 153 U 871 B A 872 n 154 A 872 B A 873 n 155 A 873 B G 874 n 156 G 874 B U 875 n 157 U 875 B C 876 n 158 C 876 B G 877 n 159 G 877 B A 878 n 160 A 878 B C 879 n 161 C 879 B THR 3 n 1 THR 3 A ASP 4 n 2 ASP 4 A PRO 5 n 3 PRO 5 A ILE 6 n 4 ILE 6 A ALA 7 n 5 ALA 7 A ASP 8 n 6 ASP 8 A MET 9 n 7 MET 9 A LEU 10 n 8 LEU 10 A THR 11 n 9 THR 11 A ARG 12 n 10 ARG 12 A ILE 13 n 11 ILE 13 A ARG 14 n 12 ARG 14 A ASN 15 n 13 ASN 15 A ALA 16 n 14 ALA 16 A THR 17 n 15 THR 17 A ARG 18 n 16 ARG 18 A VAL 19 n 17 VAL 19 A TYR 20 n 18 TYR 20 A LYS 21 n 19 LYS 21 A GLU 22 n 20 GLU 22 A SER 23 n 21 SER 23 A THR 24 n 22 THR 24 A ASP 25 n 23 ASP 25 A VAL 26 n 24 VAL 26 A PRO 27 n 25 PRO 27 A ALA 28 n 26 ALA 28 A SER 29 n 27 SER 29 A ARG 30 n 28 ARG 30 A PHE 31 n 29 PHE 31 A LYS 32 n 30 LYS 32 A GLU 33 n 31 GLU 33 A GLU 34 n 32 GLU 34 A ILE 35 n 33 ILE 35 A LEU 36 n 34 LEU 36 A ARG 37 n 35 ARG 37 A ILE 38 n 36 ILE 38 A LEU 39 n 37 LEU 39 A ALA 40 n 38 ALA 40 A ARG 41 n 39 ARG 41 A GLU 42 n 40 GLU 42 A GLY 43 n 41 GLY 43 A PHE 44 n 42 PHE 44 A ILE 45 n 43 ILE 45 A LYS 46 n 44 LYS 46 A GLY 47 n 45 GLY 47 A TYR 48 n 46 TYR 48 A GLU 49 n 47 GLU 49 A ARG 50 n 48 ARG 50 A VAL 51 n 49 VAL 51 A ASP 52 n 50 ASP 52 A VAL 53 n 51 VAL 53 A ASP 54 n 52 ASP 54 A GLY 55 n 53 GLY 55 A LYS 56 n 54 LYS 56 A PRO 57 n 55 PRO 57 A TYR 58 n 56 TYR 58 A LEU 59 n 57 LEU 59 A ARG 60 n 58 ARG 60 A VAL 61 n 59 VAL 61 A TYR 62 n 60 TYR 62 A LEU 63 n 61 LEU 63 A LYS 64 n 62 LYS 64 A TYR 65 n 63 TYR 65 A GLY 66 n 64 GLY 66 A PRO 67 n 65 PRO 67 A ARG 68 n 66 ARG 68 A ARG 69 n 67 ARG 69 A GLN 70 n 68 GLN 70 A GLY 71 n 69 GLY 71 A PRO 72 n 70 PRO 72 A ASP 73 n 71 ASP 73 A PRO 74 n 72 PRO 74 A ARG 75 n 73 ARG 75 A PRO 76 n 74 PRO 76 A GLU 77 n 75 GLU 77 A GLN 78 n 76 GLN 78 A VAL 79 n 77 VAL 79 A ILE 80 n 78 ILE 80 A HIS 81 n 79 HIS 81 A HIS 82 n 80 HIS 82 A ILE 83 n 81 ILE 83 A ARG 84 n 82 ARG 84 A ARG 85 n 83 ARG 85 A ILE 86 n 84 ILE 86 A SER 87 n 85 SER 87 A LYS 88 n 86 LYS 88 A PRO 89 n 87 PRO 89 A GLY 90 n 88 GLY 90 A ARG 91 n 89 ARG 91 A ARG 92 n 90 ARG 92 A VAL 93 n 91 VAL 93 A TYR 94 n 92 TYR 94 A VAL 95 n 93 VAL 95 A GLY 96 n 94 GLY 96 A VAL 97 n 95 VAL 97 A LYS 98 n 96 LYS 98 A GLU 99 n 97 GLU 99 A ILE 100 n 98 ILE 100 A PRO 101 n 99 PRO 101 A ARG 102 n 100 ARG 102 A VAL 103 n 101 VAL 103 A ARG 104 n 102 ARG 104 A ARG 105 n 103 ARG 105 A GLY 106 n 104 GLY 106 A LEU 107 n 105 LEU 107 A GLY 108 n 106 GLY 108 A ILE 109 n 107 ILE 109 A ALA 110 n 108 ALA 110 A ILE 111 n 109 ILE 111 A LEU 112 n 110 LEU 112 A SER 113 n 111 SER 113 A THR 114 n 112 THR 114 A SER 115 n 113 SER 115 A LYS 116 n 114 LYS 116 A GLY 117 n 115 GLY 117 A VAL 118 n 116 VAL 118 A LEU 119 n 117 LEU 119 A THR 120 n 118 THR 120 A ASP 121 n 119 ASP 121 A ARG 122 n 120 ARG 122 A GLU 123 n 121 GLU 123 A ALA 124 n 122 ALA 124 A ARG 125 n 123 ARG 125 A LYS 126 n 124 LYS 126 A LEU 127 n 125 LEU 127 A GLY 128 n 126 GLY 128 A VAL 129 n 127 VAL 129 A GLY 130 n 128 GLY 130 A GLY 131 n 129 GLY 131 A GLU 132 n 130 GLU 132 A LEU 133 n 131 LEU 133 A ILE 134 n 132 ILE 134 A CYS 135 n 133 CYS 135 A GLU 136 n 134 GLU 136 A VAL 137 n 135 VAL 137 A TRP 138 n 136 TRP 138 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 All data collection parameters are as reported for 486D. The RNA model for the S8 region of 16S rRNA was built manually by fitting to the 7.8 A X-ray map of the Thermus thermophilus 70S ribosome (Cate et al., Science 285, 2095-2104, 1999; see PDB 486D) using a single P pseudoatom for each nucleotide. Note that the nucleotide numbering corresponds to the nucleotide positions of E.coli 16S rRNA. Protein S8 from Thermus thermophilus (PDB 1AN7) was fitted to the 7.8 A map of the Thermus thermophilus 70S ribosome by splitting the protein into N- and C-terminal domains between residues 80 and 81. The two domains were fit separately, resulting in a small relative movement compared with the original X-ray structure. Only C-alpha positions are given in the PDB file. 7.50 1 7.50 0 297 0 161 136 7.50 1EMI 1 phasing MLPHARE refinement CNS data reduction DENZO data scaling SCALEPACK STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMAL PROTEIN S8. 1 N N 2 N N RIBOSOME RNA, rRNA, ribosome, ribosomal protein, 16S rRNA, S8 RS8_THET8 UNP 2 3 Q5SHQ2 1EMI PDB 1 1EMI 3 138 1EMI 3 138 Q5SHQ2 A 1 1 136 577 879 1EMI 577 879 1EMI B 2 1 161 1 GLU conflict ASP 25 1EMI A Q5SHQ2 UNP 25 23 1 LYS conflict ARG 37 1EMI A Q5SHQ2 UNP 37 35 1 GLU conflict ASP 52 1EMI A Q5SHQ2 UNP 52 50 1 ILE conflict VAL 61 1EMI A Q5SHQ2 UNP 61 59 1 HIS conflict TYR 62 1EMI A Q5SHQ2 UNP 62 60 1 LYS conflict HIS 81 1EMI A Q5SHQ2 UNP 81 79 1 ARG conflict LYS 88 1EMI A Q5SHQ2 UNP 88 86 1 PRO conflict SER 115 1EMI A Q5SHQ2 UNP 115 113 97 tetragonal I 4 2 2