0.020596
0.000000
0.000000
0.000000
0.015419
0.000000
0.000000
0.000000
0.010416
0.00000
0.00000
0.00000
Parikh, S.S.
Walcher, G.
Jones, G.D.
Slupphaug, G.
Krokan, H.E.
Blackburn, G.M.
Tainer, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
48.554
64.853
96.010
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H11 O6 P S
230.176
4'-THIO-2'4'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
DNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C4 H4 N2 O2
112.087
URACIL
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
S
N
80
N
O
N
81
N
C
N
82
N
C
N
83
R
C
N
84
S
C
N
85
S
C
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
O
N
113
N
P
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
C
N
118
R
C
N
119
N
O
N
120
S
C
N
121
N
O
N
122
N
C
N
123
R
C
Y
124
N
N
Y
125
N
C
Y
126
N
N
Y
127
N
C
Y
128
N
C
N
129
N
N
Y
130
N
N
Y
131
N
C
Y
132
N
N
Y
133
N
C
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
P
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
O
N
156
S
C
N
157
N
O
N
158
N
C
N
159
R
C
N
160
N
N
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
C
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
P
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
O
N
190
S
C
N
191
N
O
N
192
N
C
N
193
R
C
Y
194
N
N
Y
195
N
C
Y
196
N
N
Y
197
N
C
N
198
N
C
N
199
N
O
N
200
N
N
N
201
N
C
N
202
N
N
N
203
N
N
Y
204
N
C
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
O
N
220
N
P
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
C
N
225
R
C
N
226
N
O
N
227
S
C
N
228
N
O
N
229
N
C
N
230
R
C
N
231
N
N
N
232
N
C
N
233
N
O
N
234
N
N
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
N
Y
311
N
C
Y
312
N
C
Y
313
N
N
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
S
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
N
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
S
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
N
462
N
O
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
R
C
N
476
N
O
N
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
N
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
Y
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
C
Y
525
N
C
N
526
N
O
N
527
N
O
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
N
N
540
N
C
N
541
N
O
N
542
N
N
N
543
N
C
N
544
N
O
N
545
N
C
N
546
N
C
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
N
N
552
S
C
N
553
N
C
N
554
N
O
N
555
N
C
N
556
N
C
N
557
N
C
N
558
N
O
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
Y
130
N
sing
Y
131
N
sing
Y
132
N
doub
N
133
N
sing
Y
134
N
sing
Y
135
N
sing
Y
136
N
doub
N
137
N
sing
Y
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
Y
203
N
sing
Y
204
N
sing
Y
205
N
doub
N
206
N
sing
Y
207
N
sing
N
208
N
sing
Y
209
N
doub
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
Y
313
N
sing
Y
314
N
doub
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
Y
490
N
doub
Y
491
N
sing
Y
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
sing
Y
499
N
doub
N
500
N
sing
Y
501
N
doub
N
502
N
sing
Y
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
Y
518
N
doub
Y
519
N
sing
Y
520
N
sing
N
521
N
sing
Y
522
N
doub
N
523
N
sing
Y
524
N
doub
N
525
N
sing
Y
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
doub
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
doub
N
539
N
sing
N
540
N
doub
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
doub
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
5083
5088
10.1073/pnas.97.10.5083
10805771
Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
2000
UK
Embo J.
EMJODG
0897
0261-4189
17
5214
5226
10.1093/emboj/17.17.5214
Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
1998
10.2210/pdb1emj/pdb
pdb_00001emj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
1996-12-18
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.08
1.0
BL7-1
SSRL
1.08
SYNCHROTRON
SSRL BEAMLINE BL7-1
2619.762
DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3')
1
syn
polymer
3070.071
DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3')
1
syn
polymer
MITOCHONDRIAL PROTEIN
25544.137
URACIL-DNA GLYCOSYLASE
3.2.2.3
RESIDUES 85-304
1
man
polymer
112.087
URACIL
1
syn
non-polymer
18.015
water
161
nat
water
E.C.3.2.2.3
no
yes
(DT)(DG)(DT)(ASU)(DA)(DT)(DC)(DT)(DT)
TGTNATCTT
B
polydeoxyribonucleotide
no
no
(DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA)
AAAGATAACA
C
polydeoxyribonucleotide
no
no
MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ
RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV
FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL
MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ
RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV
FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
2.40
48.83
VAPOR DIFFUSION, HANGING DROP
6.5
PEG 4000, HEPES buffer, NaCl, dioxane, DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
HEPES buffer
1
NaCl
1
dioxane
1
DTT
1
PEG 4000
1
PEG 4000
2
6.009
B
2
C
30
-46.444
B_DT2:DA30_C
1
-8.367
-1.080
-1.306
1.064
-0.964
1
19
B
3
C
29
0.680
B_DG3:DC29_C
2
10.363
-0.615
-0.256
-0.096
24.264
1
20
B
4
C
28
4.987
B_DT4:DA28_C
3
7.767
-0.436
-0.716
0.226
-1.166
1
20
B
6
C
26
1.532
B_DA6:DT26_C
4
-8.085
-0.070
0.106
-0.172
5.575
1
20
B
7
C
25
5.199
B_DT7:DA25_C
5
-10.488
-0.126
0.147
-0.108
-0.296
1
19
B
8
C
24
3.878
B_DC8:DG24_C
6
-15.327
0.076
0.044
0.222
-17.067
1
20
B
9
C
23
4.016
B_DT9:DA23_C
7
-11.372
-0.023
0.440
0.153
-11.606
1
20
B
10
C
22
1.589
B_DT10:DA22_C
8
-11.156
0.202
0.134
-0.005
2.877
39.015
B
B
2
3
23.890
C
C
30
29
3.642
15.508
3.844
-0.044
BB_DT2DG3:DC29DA30_CC
1
-4.631
7.134
35.619
-2.026
-6.341
2.627
30.510
B
B
3
4
15.643
C
C
29
28
2.849
8.127
-0.235
-0.359
BB_DG3DT4:DA28DC29_CC
2
2.619
-5.042
29.318
-2.064
0.893
3.077
29.105
B
B
6
7
2.293
C
C
26
25
3.106
1.152
-0.045
-0.698
BB_DA6DT7:DA25DT26_CC
3
-0.802
1.596
29.072
-1.627
-0.077
3.301
38.228
B
B
7
8
-0.996
C
C
25
24
3.299
-0.652
-0.116
-0.260
BB_DT7DC8:DG24DA25_CC
4
0.468
-0.715
38.220
-0.315
0.237
3.597
39.124
B
B
8
9
3.307
C
C
24
23
3.620
2.213
0.249
-0.393
BB_DC8DT9:DA23DG24_CC
5
0.550
-0.822
39.060
-0.880
-0.299
3.105
34.470
B
B
9
10
3.919
C
C
23
22
3.131
2.318
-0.110
-0.028
BB_DT9DT10:DA22DA23_CC
6
2.735
-4.622
34.289
-0.392
0.592
software
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2000-05-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1EMH contains the same protein complexed to an uncleaved substrate
1SSP contains the same protein complexed to product-containing DNA
2SSP contains the L272A mutant of UDG bound to an abasic site
4SKN contains the L272R/D145N mutant of UDG bound to product DNA
UDG without DNA
RCSB
Y
RCSB
2000-03-16
REL
URA
URACIL
HOH
water
URA
55
4
URA
URA
55
A
HOH
535
5
HOH
HOH
535
B
HOH
536
5
HOH
HOH
536
B
HOH
540
5
HOH
HOH
540
B
HOH
573
5
HOH
HOH
573
B
HOH
574
5
HOH
HOH
574
B
HOH
752
5
HOH
HOH
752
B
HOH
753
5
HOH
HOH
753
B
HOH
771
5
HOH
HOH
771
B
HOH
772
5
HOH
HOH
772
B
HOH
774
5
HOH
HOH
774
B
HOH
778
5
HOH
HOH
778
B
HOH
789
5
HOH
HOH
789
B
HOH
564
5
HOH
HOH
564
C
HOH
577
5
HOH
HOH
577
C
HOH
587
5
HOH
HOH
587
C
HOH
756
5
HOH
HOH
756
C
HOH
773
5
HOH
HOH
773
C
HOH
400
5
HOH
HOH
400
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
411
5
HOH
HOH
411
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
427
5
HOH
HOH
427
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
435
5
HOH
HOH
435
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
441
5
HOH
HOH
441
A
HOH
450
5
HOH
HOH
450
A
HOH
452
5
HOH
HOH
452
A
HOH
464
5
HOH
HOH
464
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
477
5
HOH
HOH
477
A
HOH
478
5
HOH
HOH
478
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
525
5
HOH
HOH
525
A
HOH
527
5
HOH
HOH
527
A
HOH
531
5
HOH
HOH
531
A
HOH
534
5
HOH
HOH
534
A
HOH
543
5
HOH
HOH
543
A
HOH
544
5
HOH
HOH
544
A
HOH
548
5
HOH
HOH
548
A
HOH
549
5
HOH
HOH
549
A
HOH
551
5
HOH
HOH
551
A
HOH
556
5
HOH
HOH
556
A
HOH
559
5
HOH
HOH
559
A
HOH
560
5
HOH
HOH
560
A
HOH
563
5
HOH
HOH
563
A
HOH
570
5
HOH
HOH
570
A
HOH
575
5
HOH
HOH
575
A
HOH
584
5
HOH
HOH
584
A
HOH
589
5
HOH
HOH
589
A
HOH
596
5
HOH
HOH
596
A
HOH
597
5
HOH
HOH
597
A
HOH
598
5
HOH
HOH
598
A
HOH
599
5
HOH
HOH
599
A
HOH
601
5
HOH
HOH
601
A
HOH
700
5
HOH
HOH
700
A
HOH
702
5
HOH
HOH
702
A
HOH
704
5
HOH
HOH
704
A
HOH
705
5
HOH
HOH
705
A
HOH
706
5
HOH
HOH
706
A
HOH
708
5
HOH
HOH
708
A
HOH
709
5
HOH
HOH
709
A
HOH
711
5
HOH
HOH
711
A
HOH
712
5
HOH
HOH
712
A
HOH
714
5
HOH
HOH
714
A
HOH
716
5
HOH
HOH
716
A
HOH
717
5
HOH
HOH
717
A
HOH
718
5
HOH
HOH
718
A
HOH
750
5
HOH
HOH
750
A
HOH
751
5
HOH
HOH
751
A
HOH
754
5
HOH
HOH
754
A
HOH
755
5
HOH
HOH
755
A
HOH
757
5
HOH
HOH
757
A
HOH
758
5
HOH
HOH
758
A
HOH
759
5
HOH
HOH
759
A
HOH
760
5
HOH
HOH
760
A
HOH
761
5
HOH
HOH
761
A
HOH
762
5
HOH
HOH
762
A
HOH
763
5
HOH
HOH
763
A
HOH
764
5
HOH
HOH
764
A
HOH
766
5
HOH
HOH
766
A
HOH
767
5
HOH
HOH
767
A
HOH
768
5
HOH
HOH
768
A
HOH
769
5
HOH
HOH
769
A
HOH
770
5
HOH
HOH
770
A
HOH
776
5
HOH
HOH
776
A
HOH
777
5
HOH
HOH
777
A
HOH
779
5
HOH
HOH
779
A
HOH
780
5
HOH
HOH
780
A
HOH
781
5
HOH
HOH
781
A
HOH
782
5
HOH
HOH
782
A
HOH
783
5
HOH
HOH
783
A
HOH
790
5
HOH
HOH
790
A
HOH
791
5
HOH
HOH
791
A
HOH
792
5
HOH
HOH
792
A
HOH
793
5
HOH
HOH
793
A
HOH
794
5
HOH
HOH
794
A
HOH
795
5
HOH
HOH
795
A
HOH
796
5
HOH
HOH
796
A
HOH
799
5
HOH
HOH
799
A
HOH
800
5
HOH
HOH
800
A
HOH
801
5
HOH
HOH
801
A
HOH
802
5
HOH
HOH
802
A
HOH
804
5
HOH
HOH
804
A
HOH
805
5
HOH
HOH
805
A
HOH
806
5
HOH
HOH
806
A
HOH
808
5
HOH
HOH
808
A
HOH
809
5
HOH
HOH
809
A
HOH
810
5
HOH
HOH
810
A
HOH
811
5
HOH
HOH
811
A
HOH
812
5
HOH
HOH
812
A
HOH
813
5
HOH
HOH
813
A
HOH
814
5
HOH
HOH
814
A
HOH
815
5
HOH
HOH
815
A
HOH
816
5
HOH
HOH
816
A
HOH
817
5
HOH
HOH
817
A
HOH
818
5
HOH
HOH
818
A
HOH
819
5
HOH
HOH
819
A
HOH
820
5
HOH
HOH
820
A
HOH
821
5
HOH
HOH
821
A
HOH
822
5
HOH
HOH
822
A
HOH
823
5
HOH
HOH
823
A
HOH
824
5
HOH
HOH
824
A
HOH
825
5
HOH
HOH
825
A
HOH
826
5
HOH
HOH
826
A
HOH
827
5
HOH
HOH
827
A
HOH
828
5
HOH
HOH
828
A
HOH
829
5
HOH
HOH
829
A
HOH
830
5
HOH
HOH
830
A
HOH
831
5
HOH
HOH
831
A
HOH
832
5
HOH
HOH
832
A
HOH
833
5
HOH
HOH
833
A
HOH
834
5
HOH
HOH
834
A
HOH
835
5
HOH
HOH
835
A
HOH
836
5
HOH
HOH
836
A
HOH
837
5
HOH
HOH
837
A
HOH
838
5
HOH
HOH
838
A
HOH
839
5
HOH
HOH
839
A
HOH
840
5
HOH
HOH
840
A
HOH
841
5
HOH
HOH
841
A
HOH
844
5
HOH
HOH
844
A
HOH
845
5
HOH
HOH
845
A
HOH
846
5
HOH
HOH
846
A
HOH
847
5
HOH
HOH
847
A
HOH
848
5
HOH
HOH
848
A
T
2
n
1
DT
2
B
G
3
n
2
DG
3
B
T
4
n
3
DT
4
B
ASU
5
n
4
ASU
5
B
A
6
n
5
DA
6
B
T
7
n
6
DT
7
B
C
8
n
7
DC
8
B
T
9
n
8
DT
9
B
T
10
n
9
DT
10
B
A
21
n
1
DA
21
C
A
22
n
2
DA
22
C
A
23
n
3
DA
23
C
G
24
n
4
DG
24
C
A
25
n
5
DA
25
C
T
26
n
6
DT
26
C
A
27
n
7
DA
27
C
A
28
n
8
DA
28
C
C
29
n
9
DC
29
C
A
30
n
10
DA
30
C
MET
82
n
1
MET
82
A
GLU
83
n
2
GLU
83
A
PHE
84
n
3
PHE
84
A
PHE
85
n
4
PHE
85
A
GLY
86
n
5
GLY
86
A
GLU
87
n
6
GLU
87
A
SER
88
n
7
SER
88
A
TRP
89
n
8
TRP
89
A
LYS
90
n
9
LYS
90
A
LYS
91
n
10
LYS
91
A
HIS
92
n
11
HIS
92
A
LEU
93
n
12
LEU
93
A
SER
94
n
13
SER
94
A
GLY
95
n
14
GLY
95
A
GLU
96
n
15
GLU
96
A
PHE
97
n
16
PHE
97
A
GLY
98
n
17
GLY
98
A
LYS
99
n
18
LYS
99
A
PRO
100
n
19
PRO
100
A
TYR
101
n
20
TYR
101
A
PHE
102
n
21
PHE
102
A
ILE
103
n
22
ILE
103
A
LYS
104
n
23
LYS
104
A
LEU
105
n
24
LEU
105
A
MET
106
n
25
MET
106
A
GLY
107
n
26
GLY
107
A
PHE
108
n
27
PHE
108
A
VAL
109
n
28
VAL
109
A
ALA
110
n
29
ALA
110
A
GLU
111
n
30
GLU
111
A
GLU
112
n
31
GLU
112
A
ARG
113
n
32
ARG
113
A
LYS
114
n
33
LYS
114
A
HIS
115
n
34
HIS
115
A
TYR
116
n
35
TYR
116
A
THR
117
n
36
THR
117
A
VAL
118
n
37
VAL
118
A
TYR
119
n
38
TYR
119
A
PRO
120
n
39
PRO
120
A
PRO
121
n
40
PRO
121
A
PRO
122
n
41
PRO
122
A
HIS
123
n
42
HIS
123
A
GLN
124
n
43
GLN
124
A
VAL
125
n
44
VAL
125
A
PHE
126
n
45
PHE
126
A
THR
127
n
46
THR
127
A
TRP
128
n
47
TRP
128
A
THR
129
n
48
THR
129
A
GLN
130
n
49
GLN
130
A
MET
131
n
50
MET
131
A
CYS
132
n
51
CYS
132
A
ASP
133
n
52
ASP
133
A
ILE
134
n
53
ILE
134
A
LYS
135
n
54
LYS
135
A
ASP
136
n
55
ASP
136
A
VAL
137
n
56
VAL
137
A
LYS
138
n
57
LYS
138
A
VAL
139
n
58
VAL
139
A
VAL
140
n
59
VAL
140
A
ILE
141
n
60
ILE
141
A
LEU
142
n
61
LEU
142
A
GLY
143
n
62
GLY
143
A
GLN
144
n
63
GLN
144
A
ASP
145
n
64
ASP
145
A
PRO
146
n
65
PRO
146
A
TYR
147
n
66
TYR
147
A
HIS
148
n
67
HIS
148
A
GLY
149
n
68
GLY
149
A
PRO
150
n
69
PRO
150
A
ASN
151
n
70
ASN
151
A
GLN
152
n
71
GLN
152
A
ALA
153
n
72
ALA
153
A
HIS
154
n
73
HIS
154
A
GLY
155
n
74
GLY
155
A
LEU
156
n
75
LEU
156
A
CYS
157
n
76
CYS
157
A
PHE
158
n
77
PHE
158
A
SER
159
n
78
SER
159
A
VAL
160
n
79
VAL
160
A
GLN
161
n
80
GLN
161
A
ARG
162
n
81
ARG
162
A
PRO
163
n
82
PRO
163
A
VAL
164
n
83
VAL
164
A
PRO
165
n
84
PRO
165
A
PRO
166
n
85
PRO
166
A
PRO
167
n
86
PRO
167
A
PRO
168
n
87
PRO
168
A
SER
169
n
88
SER
169
A
LEU
170
n
89
LEU
170
A
GLU
171
n
90
GLU
171
A
ASN
172
n
91
ASN
172
A
ILE
173
n
92
ILE
173
A
TYR
174
n
93
TYR
174
A
LYS
175
n
94
LYS
175
A
GLU
176
n
95
GLU
176
A
LEU
177
n
96
LEU
177
A
SER
178
n
97
SER
178
A
THR
179
n
98
THR
179
A
ASP
180
n
99
ASP
180
A
ILE
181
n
100
ILE
181
A
GLU
182
n
101
GLU
182
A
ASP
183
n
102
ASP
183
A
PHE
184
n
103
PHE
184
A
VAL
185
n
104
VAL
185
A
HIS
186
n
105
HIS
186
A
PRO
187
n
106
PRO
187
A
GLY
188
n
107
GLY
188
A
HIS
189
n
108
HIS
189
A
GLY
190
n
109
GLY
190
A
ASP
191
n
110
ASP
191
A
LEU
192
n
111
LEU
192
A
SER
193
n
112
SER
193
A
GLY
194
n
113
GLY
194
A
TRP
195
n
114
TRP
195
A
ALA
196
n
115
ALA
196
A
LYS
197
n
116
LYS
197
A
GLN
198
n
117
GLN
198
A
GLY
199
n
118
GLY
199
A
VAL
200
n
119
VAL
200
A
LEU
201
n
120
LEU
201
A
LEU
202
n
121
LEU
202
A
LEU
203
n
122
LEU
203
A
ASN
204
n
123
ASN
204
A
ALA
205
n
124
ALA
205
A
VAL
206
n
125
VAL
206
A
LEU
207
n
126
LEU
207
A
THR
208
n
127
THR
208
A
VAL
209
n
128
VAL
209
A
ARG
210
n
129
ARG
210
A
ALA
211
n
130
ALA
211
A
HIS
212
n
131
HIS
212
A
GLN
213
n
132
GLN
213
A
ALA
214
n
133
ALA
214
A
ASN
215
n
134
ASN
215
A
SER
216
n
135
SER
216
A
HIS
217
n
136
HIS
217
A
LYS
218
n
137
LYS
218
A
GLU
219
n
138
GLU
219
A
ARG
220
n
139
ARG
220
A
GLY
221
n
140
GLY
221
A
TRP
222
n
141
TRP
222
A
GLU
223
n
142
GLU
223
A
GLN
224
n
143
GLN
224
A
PHE
225
n
144
PHE
225
A
THR
226
n
145
THR
226
A
ASP
227
n
146
ASP
227
A
ALA
228
n
147
ALA
228
A
VAL
229
n
148
VAL
229
A
VAL
230
n
149
VAL
230
A
SER
231
n
150
SER
231
A
TRP
232
n
151
TRP
232
A
LEU
233
n
152
LEU
233
A
ASN
234
n
153
ASN
234
A
GLN
235
n
154
GLN
235
A
ASN
236
n
155
ASN
236
A
SER
237
n
156
SER
237
A
ASN
238
n
157
ASN
238
A
GLY
239
n
158
GLY
239
A
LEU
240
n
159
LEU
240
A
VAL
241
n
160
VAL
241
A
PHE
242
n
161
PHE
242
A
LEU
243
n
162
LEU
243
A
LEU
244
n
163
LEU
244
A
TRP
245
n
164
TRP
245
A
GLY
246
n
165
GLY
246
A
SER
247
n
166
SER
247
A
TYR
248
n
167
TYR
248
A
ALA
249
n
168
ALA
249
A
GLN
250
n
169
GLN
250
A
LYS
251
n
170
LYS
251
A
LYS
252
n
171
LYS
252
A
GLY
253
n
172
GLY
253
A
SER
254
n
173
SER
254
A
ALA
255
n
174
ALA
255
A
ILE
256
n
175
ILE
256
A
ASP
257
n
176
ASP
257
A
ARG
258
n
177
ARG
258
A
LYS
259
n
178
LYS
259
A
ARG
260
n
179
ARG
260
A
HIS
261
n
180
HIS
261
A
HIS
262
n
181
HIS
262
A
VAL
263
n
182
VAL
263
A
LEU
264
n
183
LEU
264
A
GLN
265
n
184
GLN
265
A
THR
266
n
185
THR
266
A
ALA
267
n
186
ALA
267
A
HIS
268
n
187
HIS
268
A
PRO
269
n
188
PRO
269
A
SER
270
n
189
SER
270
A
PRO
271
n
190
PRO
271
A
LEU
272
n
191
LEU
272
A
SER
273
n
192
SER
273
A
VAL
274
n
193
VAL
274
A
TYR
275
n
194
TYR
275
A
ARG
276
n
195
ARG
276
A
GLY
277
n
196
GLY
277
A
PHE
278
n
197
PHE
278
A
PHE
279
n
198
PHE
279
A
GLY
280
n
199
GLY
280
A
CYS
281
n
200
CYS
281
A
ARG
282
n
201
ARG
282
A
HIS
283
n
202
HIS
283
A
PHE
284
n
203
PHE
284
A
SER
285
n
204
SER
285
A
LYS
286
n
205
LYS
286
A
THR
287
n
206
THR
287
A
ASN
288
n
207
ASN
288
A
GLU
289
n
208
GLU
289
A
LEU
290
n
209
LEU
290
A
LEU
291
n
210
LEU
291
A
GLN
292
n
211
GLN
292
A
LYS
293
n
212
LYS
293
A
SER
294
n
213
SER
294
A
GLY
295
n
214
GLY
295
A
LYS
296
n
215
LYS
296
A
LYS
297
n
216
LYS
297
A
PRO
298
n
217
PRO
298
A
ILE
299
n
218
ILE
299
A
ASP
300
n
219
ASP
300
A
TRP
301
n
220
TRP
301
A
LYS
302
n
221
LYS
302
A
GLU
303
n
222
GLU
303
A
LEU
304
n
223
LEU
304
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
119
C
N
TYR
38
A
O
VAL
209
C
O
VAL
128
A
N
LEU
201
C
N
LEU
120
A
O
VAL
139
C
O
VAL
58
A
N
VAL
140
C
N
VAL
59
A
O
VAL
241
C
O
VAL
160
A
N
PHE
242
C
N
PHE
161
A
O
HIS
262
C
O
HIS
181
1
A
GLN
144
-82.12
-73.19
1
A
GLN
152
-97.41
-69.63
1
A
PHE
158
70.11
-0.70
1
A
SER
273
-144.73
-13.98
0.2570000
0.2280000
2.0
20
2042
21111
21107
10
99.9
random
1
THROUGHOUT
2
Engh & Huber
2.0
20
161
2353
8
376
1808
19.44
2.0
30.0
1EMJ
21503
21491
2.0
1.0
0.1310000
1
6.0
6.99
99.9
0.4640000
2.00
2.07
2088
3
99.8
phasing
AMoRE
refinement
CNS
data collection
MAR345
data scaling
SCALEPACK
URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
GLY
86
C
GLY
5
HELX_P
A
SER
94
C
SER
13
1
1
9
A
GLY
95
C
GLY
14
HELX_P
A
PHE
97
C
PHE
16
5
2
3
A
LYS
99
C
LYS
18
HELX_P
A
TYR
116
C
TYR
35
1
3
18
A
PRO
121
C
PRO
40
HELX_P
A
VAL
125
C
VAL
44
5
4
5
A
PHE
126
C
PHE
45
HELX_P
A
GLN
130
C
GLN
49
5
5
5
A
ASP
133
C
ASP
52
HELX_P
A
VAL
137
C
VAL
56
5
6
5
A
PRO
167
C
PRO
86
HELX_P
A
ILE
181
C
ILE
100
1
7
15
A
LEU
192
C
LEU
111
HELX_P
A
LYS
197
C
LYS
116
1
8
6
A
GLY
221
C
GLY
140
HELX_P
A
SER
237
C
SER
156
1
9
17
A
GLY
246
C
GLY
165
HELX_P
A
LYS
251
C
LYS
170
1
10
6
A
LYS
252
C
LYS
171
HELX_P
A
ILE
256
C
ILE
175
5
11
5
A
SER
273
C
SER
192
HELX_P
A
GLY
277
C
GLY
196
5
12
5
A
ARG
282
C
ARG
201
HELX_P
A
SER
294
C
SER
213
1
13
13
covale
1.611
both
B
DT
4
A
O3'
DT
3
1_555
B
ASU
5
A
P
ASU
4
1_555
covale
1.599
one
B
ASU
5
A
O3'
ASU
4
1_555
B
DA
6
A
P
DA
5
1_555
hydrog
DT-DA PAIR
B
DT
2
A
O4
DT
1
1_555
C
DA
30
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DG
3
A
N1
DG
2
1_555
C
DC
29
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
3
A
N2
DG
2
1_555
C
DC
29
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
3
A
O6
DG
2
1_555
C
DC
29
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DT
4
A
N3
DT
3
1_555
C
DA
28
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
B
DT
4
A
O4
DT
3
1_555
C
DA
28
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
B
DA
6
A
N1
DA
5
1_555
C
DT
26
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
6
A
N6
DA
5
1_555
C
DT
26
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
DT
7
A
N3
DT
6
1_555
C
DA
25
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
7
A
O4
DT
6
1_555
C
DA
25
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N3
DC
7
1_555
C
DG
24
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
8
A
N4
DC
7
1_555
C
DG
24
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
8
A
O2
DC
7
1_555
C
DG
24
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DT
9
A
N3
DT
8
1_555
C
DA
23
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
9
A
O4
DT
8
1_555
C
DA
23
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
10
A
N3
DT
9
1_555
C
DA
22
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
10
A
O4
DT
9
1_555
C
DA
22
B
N6
DA
2
1_555
hydrolase/DNA
alpha/beta fold, Uracil-DNA Glycosylase, protein/DNA, hydrolase-DNA COMPLEX
A
TYR
119
C
TYR
38
1
A
PRO
120
C
PRO
39
-0.87
A
ARG
162
C
ARG
81
1
A
PRO
163
C
PRO
82
0.47
UNG_HUMAN
UNP
3
94
P13051
1EMJ
PDB
1
1EMJ
1EMJ
PDB
2
1EMJ
94
313
1EMJ
82
304
P13051
A
1
1
223
2
10
1EMJ
2
10
1EMJ
B
2
1
9
21
30
1EMJ
21
30
1EMJ
C
3
1
10
1
PRO
conflict
MET
82
1EMJ
A
P13051
UNP
82
1
1
VAL
conflict
GLU
83
1EMJ
A
P13051
UNP
83
2
1
GLY
conflict
PHE
84
1EMJ
A
P13051
UNP
84
3
2
4
anti-parallel
parallel
parallel
parallel
A
VAL
118
C
VAL
37
A
TYR
119
C
TYR
38
A
VAL
209
C
VAL
128
A
ARG
210
C
ARG
129
A
VAL
200
C
VAL
119
A
ASN
204
C
ASN
123
A
VAL
139
C
VAL
58
A
GLY
143
C
GLY
62
A
VAL
241
C
VAL
160
A
TRP
245
C
TRP
164
A
HIS
262
C
HIS
181
A
THR
266
C
THR
185
BINDING SITE FOR RESIDUE URA A 55
A
URA
55
Software
10
A
GLY
143
C
GLY
62
10
1_555
A
GLN
144
C
GLN
63
10
1_555
A
ASP
145
C
ASP
64
10
1_555
A
TYR
147
C
TYR
66
10
1_555
A
CYS
157
C
CYS
76
10
1_555
A
PHE
158
C
PHE
77
10
1_555
A
ASN
204
C
ASN
123
10
1_555
A
HIS
268
C
HIS
187
10
1_555
A
HOH
427
G
HOH
10
1_555
B
ASU
5
A
ASU
4
10
1_555
19
orthorhombic
P 21 21 21