0.020596 0.000000 0.000000 0.000000 0.015419 0.000000 0.000000 0.000000 0.010416 0.00000 0.00000 0.00000 Parikh, S.S. Walcher, G. Jones, G.D. Slupphaug, G. Krokan, H.E. Blackburn, G.M. Tainer, J.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 48.554 64.853 96.010 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H11 O6 P S 230.176 4'-THIO-2'4'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE DNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C4 H4 N2 O2 112.087 URACIL non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N P N 75 N O N 76 N O N 77 N O N 78 N O N 79 N S N 80 N O N 81 N C N 82 N C N 83 R C N 84 S C N 85 S C N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N O N 113 N P N 114 N O N 115 N O N 116 N O N 117 N C N 118 R C N 119 N O N 120 S C N 121 N O N 122 N C N 123 R C Y 124 N N Y 125 N C Y 126 N N Y 127 N C Y 128 N C N 129 N N Y 130 N N Y 131 N C Y 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 N C N 159 R C N 160 N N N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N C N 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C Y 194 N N Y 195 N C Y 196 N N Y 197 N C N 198 N C N 199 N O N 200 N N N 201 N C N 202 N N N 203 N N Y 204 N C N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N P N 221 N O N 222 N O N 223 N O N 224 N C N 225 R C N 226 N O N 227 S C N 228 N O N 229 N C N 230 R C N 231 N N N 232 N C N 233 N O N 234 N N N 235 N C N 236 N O N 237 N C N 238 N C N 239 N C N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N C N 262 N O N 263 N N N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N O N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 N C N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N N Y 311 N C Y 312 N C Y 313 N N N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N O N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 S C N 333 N C N 334 N C N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N C N 380 N N N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N C N 403 N S N 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N N N 441 S C N 442 N C N 443 N O N 444 N C N 445 N C N 446 N C N 447 N O N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 S C N 459 N C N 460 N O N 461 N C N 462 N O N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 R C N 476 N O N 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C Y 493 N C Y 494 N C Y 495 N C Y 496 N N Y 497 N C Y 498 N C Y 499 N C Y 500 N C Y 501 N C N 502 N O N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N N N 516 S C N 517 N C N 518 N O N 519 N C Y 520 N C Y 521 N C Y 522 N C Y 523 N C Y 524 N C Y 525 N C N 526 N O N 527 N O N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N N N 540 N C N 541 N O N 542 N N N 543 N C N 544 N O N 545 N C N 546 N C N 547 N H N 548 N H N 549 N H N 550 N H N 551 N N N 552 S C N 553 N C N 554 N O N 555 N C N 556 N C N 557 N C N 558 N O N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing Y 130 N sing Y 131 N sing Y 132 N doub N 133 N sing Y 134 N sing Y 135 N sing Y 136 N doub N 137 N sing Y 138 N doub N 139 N sing N 140 N sing Y 141 N sing Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing Y 203 N sing Y 204 N sing Y 205 N doub N 206 N sing Y 207 N sing N 208 N sing Y 209 N doub N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing Y 313 N sing Y 314 N doub Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing Y 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing Y 421 N doub Y 422 N sing Y 423 N sing N 424 N sing Y 425 N doub N 426 N sing Y 427 N doub N 428 N sing Y 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N doub N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing Y 490 N doub Y 491 N sing Y 492 N sing N 493 N sing Y 494 N doub Y 495 N sing Y 496 N sing N 497 N sing Y 498 N sing Y 499 N doub N 500 N sing Y 501 N doub N 502 N sing Y 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing Y 518 N doub Y 519 N sing Y 520 N sing N 521 N sing Y 522 N doub N 523 N sing Y 524 N doub N 525 N sing Y 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N doub N 535 N sing N 536 N sing N 537 N sing N 538 N doub N 539 N sing N 540 N doub N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N doub N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 5083 5088 10.1073/pnas.97.10.5083 10805771 Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. 2000 UK Embo J. EMJODG 0897 0261-4189 17 5214 5226 10.1093/emboj/17.17.5214 Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA 1998 10.2210/pdb1emj/pdb pdb_00001emj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 IMAGE PLATE 1996-12-18 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.08 1.0 BL7-1 SSRL 1.08 SYNCHROTRON SSRL BEAMLINE BL7-1 2619.762 DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3') 1 syn polymer 3070.071 DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3') 1 syn polymer MITOCHONDRIAL PROTEIN 25544.137 URACIL-DNA GLYCOSYLASE 3.2.2.3 RESIDUES 85-304 1 man polymer 112.087 URACIL 1 syn non-polymer 18.015 water 161 nat water E.C.3.2.2.3 no yes (DT)(DG)(DT)(ASU)(DA)(DT)(DC)(DT)(DT) TGTNATCTT B polydeoxyribonucleotide no no (DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA) AAAGATAACA C polydeoxyribonucleotide no no MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 2.40 48.83 VAPOR DIFFUSION, HANGING DROP 6.5 PEG 4000, HEPES buffer, NaCl, dioxane, DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 HEPES buffer 1 NaCl 1 dioxane 1 DTT 1 PEG 4000 1 PEG 4000 2 6.009 B 2 C 30 -46.444 B_DT2:DA30_C 1 -8.367 -1.080 -1.306 1.064 -0.964 1 19 B 3 C 29 0.680 B_DG3:DC29_C 2 10.363 -0.615 -0.256 -0.096 24.264 1 20 B 4 C 28 4.987 B_DT4:DA28_C 3 7.767 -0.436 -0.716 0.226 -1.166 1 20 B 6 C 26 1.532 B_DA6:DT26_C 4 -8.085 -0.070 0.106 -0.172 5.575 1 20 B 7 C 25 5.199 B_DT7:DA25_C 5 -10.488 -0.126 0.147 -0.108 -0.296 1 19 B 8 C 24 3.878 B_DC8:DG24_C 6 -15.327 0.076 0.044 0.222 -17.067 1 20 B 9 C 23 4.016 B_DT9:DA23_C 7 -11.372 -0.023 0.440 0.153 -11.606 1 20 B 10 C 22 1.589 B_DT10:DA22_C 8 -11.156 0.202 0.134 -0.005 2.877 39.015 B B 2 3 23.890 C C 30 29 3.642 15.508 3.844 -0.044 BB_DT2DG3:DC29DA30_CC 1 -4.631 7.134 35.619 -2.026 -6.341 2.627 30.510 B B 3 4 15.643 C C 29 28 2.849 8.127 -0.235 -0.359 BB_DG3DT4:DA28DC29_CC 2 2.619 -5.042 29.318 -2.064 0.893 3.077 29.105 B B 6 7 2.293 C C 26 25 3.106 1.152 -0.045 -0.698 BB_DA6DT7:DA25DT26_CC 3 -0.802 1.596 29.072 -1.627 -0.077 3.301 38.228 B B 7 8 -0.996 C C 25 24 3.299 -0.652 -0.116 -0.260 BB_DT7DC8:DG24DA25_CC 4 0.468 -0.715 38.220 -0.315 0.237 3.597 39.124 B B 8 9 3.307 C C 24 23 3.620 2.213 0.249 -0.393 BB_DC8DT9:DA23DG24_CC 5 0.550 -0.822 39.060 -0.880 -0.299 3.105 34.470 B B 9 10 3.919 C C 23 22 3.131 2.318 -0.110 -0.028 BB_DT9DT10:DA22DA23_CC 6 2.735 -4.622 34.289 -0.392 0.592 software chem_comp_atom chem_comp_bond database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2000-05-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-02-07 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1EMH contains the same protein complexed to an uncleaved substrate 1SSP contains the same protein complexed to product-containing DNA 2SSP contains the L272A mutant of UDG bound to an abasic site 4SKN contains the L272R/D145N mutant of UDG bound to product DNA UDG without DNA RCSB Y RCSB 2000-03-16 REL URA URACIL HOH water URA 55 4 URA URA 55 A HOH 535 5 HOH HOH 535 B HOH 536 5 HOH HOH 536 B HOH 540 5 HOH HOH 540 B HOH 573 5 HOH HOH 573 B HOH 574 5 HOH HOH 574 B HOH 752 5 HOH HOH 752 B HOH 753 5 HOH HOH 753 B HOH 771 5 HOH HOH 771 B HOH 772 5 HOH HOH 772 B HOH 774 5 HOH HOH 774 B HOH 778 5 HOH HOH 778 B HOH 789 5 HOH HOH 789 B HOH 564 5 HOH HOH 564 C HOH 577 5 HOH HOH 577 C HOH 587 5 HOH HOH 587 C HOH 756 5 HOH HOH 756 C HOH 773 5 HOH HOH 773 C HOH 400 5 HOH HOH 400 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 411 5 HOH HOH 411 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 427 5 HOH HOH 427 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 432 5 HOH HOH 432 A HOH 433 5 HOH HOH 433 A HOH 435 5 HOH HOH 435 A HOH 438 5 HOH HOH 438 A HOH 439 5 HOH HOH 439 A HOH 441 5 HOH HOH 441 A HOH 450 5 HOH HOH 450 A HOH 452 5 HOH HOH 452 A HOH 464 5 HOH HOH 464 A HOH 473 5 HOH HOH 473 A HOH 474 5 HOH HOH 474 A HOH 477 5 HOH HOH 477 A HOH 478 5 HOH HOH 478 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 527 5 HOH HOH 527 A HOH 531 5 HOH HOH 531 A HOH 534 5 HOH HOH 534 A HOH 543 5 HOH HOH 543 A HOH 544 5 HOH HOH 544 A HOH 548 5 HOH HOH 548 A HOH 549 5 HOH HOH 549 A HOH 551 5 HOH HOH 551 A HOH 556 5 HOH HOH 556 A HOH 559 5 HOH HOH 559 A HOH 560 5 HOH HOH 560 A HOH 563 5 HOH HOH 563 A HOH 570 5 HOH HOH 570 A HOH 575 5 HOH HOH 575 A HOH 584 5 HOH HOH 584 A HOH 589 5 HOH HOH 589 A HOH 596 5 HOH HOH 596 A HOH 597 5 HOH HOH 597 A HOH 598 5 HOH HOH 598 A HOH 599 5 HOH HOH 599 A HOH 601 5 HOH HOH 601 A HOH 700 5 HOH HOH 700 A HOH 702 5 HOH HOH 702 A HOH 704 5 HOH HOH 704 A HOH 705 5 HOH HOH 705 A HOH 706 5 HOH HOH 706 A HOH 708 5 HOH HOH 708 A HOH 709 5 HOH HOH 709 A HOH 711 5 HOH HOH 711 A HOH 712 5 HOH HOH 712 A HOH 714 5 HOH HOH 714 A HOH 716 5 HOH HOH 716 A HOH 717 5 HOH HOH 717 A HOH 718 5 HOH HOH 718 A HOH 750 5 HOH HOH 750 A HOH 751 5 HOH HOH 751 A HOH 754 5 HOH HOH 754 A HOH 755 5 HOH HOH 755 A HOH 757 5 HOH HOH 757 A HOH 758 5 HOH HOH 758 A HOH 759 5 HOH HOH 759 A HOH 760 5 HOH HOH 760 A HOH 761 5 HOH HOH 761 A HOH 762 5 HOH HOH 762 A HOH 763 5 HOH HOH 763 A HOH 764 5 HOH HOH 764 A HOH 766 5 HOH HOH 766 A HOH 767 5 HOH HOH 767 A HOH 768 5 HOH HOH 768 A HOH 769 5 HOH HOH 769 A HOH 770 5 HOH HOH 770 A HOH 776 5 HOH HOH 776 A HOH 777 5 HOH HOH 777 A HOH 779 5 HOH HOH 779 A HOH 780 5 HOH HOH 780 A HOH 781 5 HOH HOH 781 A HOH 782 5 HOH HOH 782 A HOH 783 5 HOH HOH 783 A HOH 790 5 HOH HOH 790 A HOH 791 5 HOH HOH 791 A HOH 792 5 HOH HOH 792 A HOH 793 5 HOH HOH 793 A HOH 794 5 HOH HOH 794 A HOH 795 5 HOH HOH 795 A HOH 796 5 HOH HOH 796 A HOH 799 5 HOH HOH 799 A HOH 800 5 HOH HOH 800 A HOH 801 5 HOH HOH 801 A HOH 802 5 HOH HOH 802 A HOH 804 5 HOH HOH 804 A HOH 805 5 HOH HOH 805 A HOH 806 5 HOH HOH 806 A HOH 808 5 HOH HOH 808 A HOH 809 5 HOH HOH 809 A HOH 810 5 HOH HOH 810 A HOH 811 5 HOH HOH 811 A HOH 812 5 HOH HOH 812 A HOH 813 5 HOH HOH 813 A HOH 814 5 HOH HOH 814 A HOH 815 5 HOH HOH 815 A HOH 816 5 HOH HOH 816 A HOH 817 5 HOH HOH 817 A HOH 818 5 HOH HOH 818 A HOH 819 5 HOH HOH 819 A HOH 820 5 HOH HOH 820 A HOH 821 5 HOH HOH 821 A HOH 822 5 HOH HOH 822 A HOH 823 5 HOH HOH 823 A HOH 824 5 HOH HOH 824 A HOH 825 5 HOH HOH 825 A HOH 826 5 HOH HOH 826 A HOH 827 5 HOH HOH 827 A HOH 828 5 HOH HOH 828 A HOH 829 5 HOH HOH 829 A HOH 830 5 HOH HOH 830 A HOH 831 5 HOH HOH 831 A HOH 832 5 HOH HOH 832 A HOH 833 5 HOH HOH 833 A HOH 834 5 HOH HOH 834 A HOH 835 5 HOH HOH 835 A HOH 836 5 HOH HOH 836 A HOH 837 5 HOH HOH 837 A HOH 838 5 HOH HOH 838 A HOH 839 5 HOH HOH 839 A HOH 840 5 HOH HOH 840 A HOH 841 5 HOH HOH 841 A HOH 844 5 HOH HOH 844 A HOH 845 5 HOH HOH 845 A HOH 846 5 HOH HOH 846 A HOH 847 5 HOH HOH 847 A HOH 848 5 HOH HOH 848 A T 2 n 1 DT 2 B G 3 n 2 DG 3 B T 4 n 3 DT 4 B ASU 5 n 4 ASU 5 B A 6 n 5 DA 6 B T 7 n 6 DT 7 B C 8 n 7 DC 8 B T 9 n 8 DT 9 B T 10 n 9 DT 10 B A 21 n 1 DA 21 C A 22 n 2 DA 22 C A 23 n 3 DA 23 C G 24 n 4 DG 24 C A 25 n 5 DA 25 C T 26 n 6 DT 26 C A 27 n 7 DA 27 C A 28 n 8 DA 28 C C 29 n 9 DC 29 C A 30 n 10 DA 30 C MET 82 n 1 MET 82 A GLU 83 n 2 GLU 83 A PHE 84 n 3 PHE 84 A PHE 85 n 4 PHE 85 A GLY 86 n 5 GLY 86 A GLU 87 n 6 GLU 87 A SER 88 n 7 SER 88 A TRP 89 n 8 TRP 89 A LYS 90 n 9 LYS 90 A LYS 91 n 10 LYS 91 A HIS 92 n 11 HIS 92 A LEU 93 n 12 LEU 93 A SER 94 n 13 SER 94 A GLY 95 n 14 GLY 95 A GLU 96 n 15 GLU 96 A PHE 97 n 16 PHE 97 A GLY 98 n 17 GLY 98 A LYS 99 n 18 LYS 99 A PRO 100 n 19 PRO 100 A TYR 101 n 20 TYR 101 A PHE 102 n 21 PHE 102 A ILE 103 n 22 ILE 103 A LYS 104 n 23 LYS 104 A LEU 105 n 24 LEU 105 A MET 106 n 25 MET 106 A GLY 107 n 26 GLY 107 A PHE 108 n 27 PHE 108 A VAL 109 n 28 VAL 109 A ALA 110 n 29 ALA 110 A GLU 111 n 30 GLU 111 A GLU 112 n 31 GLU 112 A ARG 113 n 32 ARG 113 A LYS 114 n 33 LYS 114 A HIS 115 n 34 HIS 115 A TYR 116 n 35 TYR 116 A THR 117 n 36 THR 117 A VAL 118 n 37 VAL 118 A TYR 119 n 38 TYR 119 A PRO 120 n 39 PRO 120 A PRO 121 n 40 PRO 121 A PRO 122 n 41 PRO 122 A HIS 123 n 42 HIS 123 A GLN 124 n 43 GLN 124 A VAL 125 n 44 VAL 125 A PHE 126 n 45 PHE 126 A THR 127 n 46 THR 127 A TRP 128 n 47 TRP 128 A THR 129 n 48 THR 129 A GLN 130 n 49 GLN 130 A MET 131 n 50 MET 131 A CYS 132 n 51 CYS 132 A ASP 133 n 52 ASP 133 A ILE 134 n 53 ILE 134 A LYS 135 n 54 LYS 135 A ASP 136 n 55 ASP 136 A VAL 137 n 56 VAL 137 A LYS 138 n 57 LYS 138 A VAL 139 n 58 VAL 139 A VAL 140 n 59 VAL 140 A ILE 141 n 60 ILE 141 A LEU 142 n 61 LEU 142 A GLY 143 n 62 GLY 143 A GLN 144 n 63 GLN 144 A ASP 145 n 64 ASP 145 A PRO 146 n 65 PRO 146 A TYR 147 n 66 TYR 147 A HIS 148 n 67 HIS 148 A GLY 149 n 68 GLY 149 A PRO 150 n 69 PRO 150 A ASN 151 n 70 ASN 151 A GLN 152 n 71 GLN 152 A ALA 153 n 72 ALA 153 A HIS 154 n 73 HIS 154 A GLY 155 n 74 GLY 155 A LEU 156 n 75 LEU 156 A CYS 157 n 76 CYS 157 A PHE 158 n 77 PHE 158 A SER 159 n 78 SER 159 A VAL 160 n 79 VAL 160 A GLN 161 n 80 GLN 161 A ARG 162 n 81 ARG 162 A PRO 163 n 82 PRO 163 A VAL 164 n 83 VAL 164 A PRO 165 n 84 PRO 165 A PRO 166 n 85 PRO 166 A PRO 167 n 86 PRO 167 A PRO 168 n 87 PRO 168 A SER 169 n 88 SER 169 A LEU 170 n 89 LEU 170 A GLU 171 n 90 GLU 171 A ASN 172 n 91 ASN 172 A ILE 173 n 92 ILE 173 A TYR 174 n 93 TYR 174 A LYS 175 n 94 LYS 175 A GLU 176 n 95 GLU 176 A LEU 177 n 96 LEU 177 A SER 178 n 97 SER 178 A THR 179 n 98 THR 179 A ASP 180 n 99 ASP 180 A ILE 181 n 100 ILE 181 A GLU 182 n 101 GLU 182 A ASP 183 n 102 ASP 183 A PHE 184 n 103 PHE 184 A VAL 185 n 104 VAL 185 A HIS 186 n 105 HIS 186 A PRO 187 n 106 PRO 187 A GLY 188 n 107 GLY 188 A HIS 189 n 108 HIS 189 A GLY 190 n 109 GLY 190 A ASP 191 n 110 ASP 191 A LEU 192 n 111 LEU 192 A SER 193 n 112 SER 193 A GLY 194 n 113 GLY 194 A TRP 195 n 114 TRP 195 A ALA 196 n 115 ALA 196 A LYS 197 n 116 LYS 197 A GLN 198 n 117 GLN 198 A GLY 199 n 118 GLY 199 A VAL 200 n 119 VAL 200 A LEU 201 n 120 LEU 201 A LEU 202 n 121 LEU 202 A LEU 203 n 122 LEU 203 A ASN 204 n 123 ASN 204 A ALA 205 n 124 ALA 205 A VAL 206 n 125 VAL 206 A LEU 207 n 126 LEU 207 A THR 208 n 127 THR 208 A VAL 209 n 128 VAL 209 A ARG 210 n 129 ARG 210 A ALA 211 n 130 ALA 211 A HIS 212 n 131 HIS 212 A GLN 213 n 132 GLN 213 A ALA 214 n 133 ALA 214 A ASN 215 n 134 ASN 215 A SER 216 n 135 SER 216 A HIS 217 n 136 HIS 217 A LYS 218 n 137 LYS 218 A GLU 219 n 138 GLU 219 A ARG 220 n 139 ARG 220 A GLY 221 n 140 GLY 221 A TRP 222 n 141 TRP 222 A GLU 223 n 142 GLU 223 A GLN 224 n 143 GLN 224 A PHE 225 n 144 PHE 225 A THR 226 n 145 THR 226 A ASP 227 n 146 ASP 227 A ALA 228 n 147 ALA 228 A VAL 229 n 148 VAL 229 A VAL 230 n 149 VAL 230 A SER 231 n 150 SER 231 A TRP 232 n 151 TRP 232 A LEU 233 n 152 LEU 233 A ASN 234 n 153 ASN 234 A GLN 235 n 154 GLN 235 A ASN 236 n 155 ASN 236 A SER 237 n 156 SER 237 A ASN 238 n 157 ASN 238 A GLY 239 n 158 GLY 239 A LEU 240 n 159 LEU 240 A VAL 241 n 160 VAL 241 A PHE 242 n 161 PHE 242 A LEU 243 n 162 LEU 243 A LEU 244 n 163 LEU 244 A TRP 245 n 164 TRP 245 A GLY 246 n 165 GLY 246 A SER 247 n 166 SER 247 A TYR 248 n 167 TYR 248 A ALA 249 n 168 ALA 249 A GLN 250 n 169 GLN 250 A LYS 251 n 170 LYS 251 A LYS 252 n 171 LYS 252 A GLY 253 n 172 GLY 253 A SER 254 n 173 SER 254 A ALA 255 n 174 ALA 255 A ILE 256 n 175 ILE 256 A ASP 257 n 176 ASP 257 A ARG 258 n 177 ARG 258 A LYS 259 n 178 LYS 259 A ARG 260 n 179 ARG 260 A HIS 261 n 180 HIS 261 A HIS 262 n 181 HIS 262 A VAL 263 n 182 VAL 263 A LEU 264 n 183 LEU 264 A GLN 265 n 184 GLN 265 A THR 266 n 185 THR 266 A ALA 267 n 186 ALA 267 A HIS 268 n 187 HIS 268 A PRO 269 n 188 PRO 269 A SER 270 n 189 SER 270 A PRO 271 n 190 PRO 271 A LEU 272 n 191 LEU 272 A SER 273 n 192 SER 273 A VAL 274 n 193 VAL 274 A TYR 275 n 194 TYR 275 A ARG 276 n 195 ARG 276 A GLY 277 n 196 GLY 277 A PHE 278 n 197 PHE 278 A PHE 279 n 198 PHE 279 A GLY 280 n 199 GLY 280 A CYS 281 n 200 CYS 281 A ARG 282 n 201 ARG 282 A HIS 283 n 202 HIS 283 A PHE 284 n 203 PHE 284 A SER 285 n 204 SER 285 A LYS 286 n 205 LYS 286 A THR 287 n 206 THR 287 A ASN 288 n 207 ASN 288 A GLU 289 n 208 GLU 289 A LEU 290 n 209 LEU 290 A LEU 291 n 210 LEU 291 A GLN 292 n 211 GLN 292 A LYS 293 n 212 LYS 293 A SER 294 n 213 SER 294 A GLY 295 n 214 GLY 295 A LYS 296 n 215 LYS 296 A LYS 297 n 216 LYS 297 A PRO 298 n 217 PRO 298 A ILE 299 n 218 ILE 299 A ASP 300 n 219 ASP 300 A TRP 301 n 220 TRP 301 A LYS 302 n 221 LYS 302 A GLU 303 n 222 GLU 303 A LEU 304 n 223 LEU 304 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 119 C N TYR 38 A O VAL 209 C O VAL 128 A N LEU 201 C N LEU 120 A O VAL 139 C O VAL 58 A N VAL 140 C N VAL 59 A O VAL 241 C O VAL 160 A N PHE 242 C N PHE 161 A O HIS 262 C O HIS 181 1 A GLN 144 -82.12 -73.19 1 A GLN 152 -97.41 -69.63 1 A PHE 158 70.11 -0.70 1 A SER 273 -144.73 -13.98 0.2570000 0.2280000 2.0 20 2042 21111 21107 10 99.9 random 1 THROUGHOUT 2 Engh & Huber 2.0 20 161 2353 8 376 1808 19.44 2.0 30.0 1EMJ 21503 21491 2.0 1.0 0.1310000 1 6.0 6.99 99.9 0.4640000 2.00 2.07 2088 3 99.8 phasing AMoRE refinement CNS data collection MAR345 data scaling SCALEPACK URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A GLY 86 C GLY 5 HELX_P A SER 94 C SER 13 1 1 9 A GLY 95 C GLY 14 HELX_P A PHE 97 C PHE 16 5 2 3 A LYS 99 C LYS 18 HELX_P A TYR 116 C TYR 35 1 3 18 A PRO 121 C PRO 40 HELX_P A VAL 125 C VAL 44 5 4 5 A PHE 126 C PHE 45 HELX_P A GLN 130 C GLN 49 5 5 5 A ASP 133 C ASP 52 HELX_P A VAL 137 C VAL 56 5 6 5 A PRO 167 C PRO 86 HELX_P A ILE 181 C ILE 100 1 7 15 A LEU 192 C LEU 111 HELX_P A LYS 197 C LYS 116 1 8 6 A GLY 221 C GLY 140 HELX_P A SER 237 C SER 156 1 9 17 A GLY 246 C GLY 165 HELX_P A LYS 251 C LYS 170 1 10 6 A LYS 252 C LYS 171 HELX_P A ILE 256 C ILE 175 5 11 5 A SER 273 C SER 192 HELX_P A GLY 277 C GLY 196 5 12 5 A ARG 282 C ARG 201 HELX_P A SER 294 C SER 213 1 13 13 covale 1.611 both B DT 4 A O3' DT 3 1_555 B ASU 5 A P ASU 4 1_555 covale 1.599 one B ASU 5 A O3' ASU 4 1_555 B DA 6 A P DA 5 1_555 hydrog DT-DA PAIR B DT 2 A O4 DT 1 1_555 C DA 30 B N6 DA 10 1_555 hydrog WATSON-CRICK B DG 3 A N1 DG 2 1_555 C DC 29 B N3 DC 9 1_555 hydrog WATSON-CRICK B DG 3 A N2 DG 2 1_555 C DC 29 B O2 DC 9 1_555 hydrog WATSON-CRICK B DG 3 A O6 DG 2 1_555 C DC 29 B N4 DC 9 1_555 hydrog WATSON-CRICK B DT 4 A N3 DT 3 1_555 C DA 28 B N1 DA 8 1_555 hydrog WATSON-CRICK B DT 4 A O4 DT 3 1_555 C DA 28 B N6 DA 8 1_555 hydrog WATSON-CRICK B DA 6 A N1 DA 5 1_555 C DT 26 B N3 DT 6 1_555 hydrog WATSON-CRICK B DA 6 A N6 DA 5 1_555 C DT 26 B O4 DT 6 1_555 hydrog WATSON-CRICK B DT 7 A N3 DT 6 1_555 C DA 25 B N1 DA 5 1_555 hydrog WATSON-CRICK B DT 7 A O4 DT 6 1_555 C DA 25 B N6 DA 5 1_555 hydrog WATSON-CRICK B DC 8 A N3 DC 7 1_555 C DG 24 B N1 DG 4 1_555 hydrog WATSON-CRICK B DC 8 A N4 DC 7 1_555 C DG 24 B O6 DG 4 1_555 hydrog WATSON-CRICK B DC 8 A O2 DC 7 1_555 C DG 24 B N2 DG 4 1_555 hydrog WATSON-CRICK B DT 9 A N3 DT 8 1_555 C DA 23 B N1 DA 3 1_555 hydrog WATSON-CRICK B DT 9 A O4 DT 8 1_555 C DA 23 B N6 DA 3 1_555 hydrog WATSON-CRICK B DT 10 A N3 DT 9 1_555 C DA 22 B N1 DA 2 1_555 hydrog WATSON-CRICK B DT 10 A O4 DT 9 1_555 C DA 22 B N6 DA 2 1_555 hydrolase/DNA alpha/beta fold, Uracil-DNA Glycosylase, protein/DNA, hydrolase-DNA COMPLEX A TYR 119 C TYR 38 1 A PRO 120 C PRO 39 -0.87 A ARG 162 C ARG 81 1 A PRO 163 C PRO 82 0.47 UNG_HUMAN UNP 3 94 P13051 1EMJ PDB 1 1EMJ 1EMJ PDB 2 1EMJ 94 313 1EMJ 82 304 P13051 A 1 1 223 2 10 1EMJ 2 10 1EMJ B 2 1 9 21 30 1EMJ 21 30 1EMJ C 3 1 10 1 PRO conflict MET 82 1EMJ A P13051 UNP 82 1 1 VAL conflict GLU 83 1EMJ A P13051 UNP 83 2 1 GLY conflict PHE 84 1EMJ A P13051 UNP 84 3 2 4 anti-parallel parallel parallel parallel A VAL 118 C VAL 37 A TYR 119 C TYR 38 A VAL 209 C VAL 128 A ARG 210 C ARG 129 A VAL 200 C VAL 119 A ASN 204 C ASN 123 A VAL 139 C VAL 58 A GLY 143 C GLY 62 A VAL 241 C VAL 160 A TRP 245 C TRP 164 A HIS 262 C HIS 181 A THR 266 C THR 185 BINDING SITE FOR RESIDUE URA A 55 A URA 55 Software 10 A GLY 143 C GLY 62 10 1_555 A GLN 144 C GLN 63 10 1_555 A ASP 145 C ASP 64 10 1_555 A TYR 147 C TYR 66 10 1_555 A CYS 157 C CYS 76 10 1_555 A PHE 158 C PHE 77 10 1_555 A ASN 204 C ASN 123 10 1_555 A HIS 268 C HIS 187 10 1_555 A HOH 427 G HOH 10 1_555 B ASU 5 A ASU 4 10 1_555 19 orthorhombic P 21 21 21