0.024155
0.000000
0.000042
0.000000
0.024570
0.000000
0.000000
0.000000
0.026738
0.00000
0.00000
0.00000
Vassylyev, D.G.
Ariyoshi, M.
Matsumoto, O.
Katayanagi, K.
Ohtsuka, E.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
90.10
90.00
41.400
40.700
37.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
249
360
375
10.1006/jmbi.1995.0302
7783199
Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
1995
UK
Curr.Opin.Struct.Biol.
COSBEF
0801
0959-440X
3
17
DNA Repair Enzymes
1993
US
Science
SCIEAS
0038
0036-8075
256
523
X-Ray Structure of T4 Endonuclease V: An Excision Repair Enzyme Specific for a Pyrimidine Dimer
1992
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
89
9420
Role of the Basic Amino Acid Cluster and Glu-23 in Pyrimidine Dimeer Glycosylase Activity of T4 Endonuclease V
1992
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
202
683
Preliminary Crystallographic Study of Pyrimidine Dimer-Specific Excision-Repair Enzyme from Bacteriophage T4
1988
10.2210/pdb1eni/pdb
pdb_00001eni
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
16075.508
ENDONUCLEASE V
3.1.25.1
1
man
polymer
18.015
water
111
nat
water
no
no
MTQINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLK
RGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
MTQINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLK
RGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
sample
10665
Enterobacteria phage T4
1.96
37.23
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Other
1
0
1994-10-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
Y
BNL
1994-08-08
REL
HOH
water
HOH
140
2
HOH
HOH
140
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
145
2
HOH
HOH
145
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
150
2
HOH
HOH
150
A
HOH
153
2
HOH
HOH
153
A
HOH
154
2
HOH
HOH
154
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
159
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
164
2
HOH
HOH
164
A
HOH
167
2
HOH
HOH
167
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
179
2
HOH
HOH
179
A
HOH
180
2
HOH
HOH
180
A
HOH
182
2
HOH
HOH
182
A
HOH
183
2
HOH
HOH
183
A
HOH
186
2
HOH
HOH
186
A
HOH
190
2
HOH
HOH
190
A
HOH
192
2
HOH
HOH
192
A
HOH
198
2
HOH
HOH
198
A
HOH
204
2
HOH
HOH
204
A
HOH
206
2
HOH
HOH
206
A
HOH
209
2
HOH
HOH
209
A
HOH
229
2
HOH
HOH
229
A
HOH
238
2
HOH
HOH
238
A
HOH
256
2
HOH
HOH
256
A
HOH
260
2
HOH
HOH
260
A
HOH
261
2
HOH
HOH
261
A
HOH
264
2
HOH
HOH
264
A
HOH
269
2
HOH
HOH
269
A
HOH
284
2
HOH
HOH
284
A
HOH
305
2
HOH
HOH
305
A
HOH
313
2
HOH
HOH
313
A
HOH
315
2
HOH
HOH
315
A
HOH
316
2
HOH
HOH
316
A
HOH
317
2
HOH
HOH
317
A
HOH
319
2
HOH
HOH
319
A
HOH
320
2
HOH
HOH
320
A
HOH
322
2
HOH
HOH
322
A
HOH
323
2
HOH
HOH
323
A
HOH
324
2
HOH
HOH
324
A
HOH
325
2
HOH
HOH
325
A
HOH
326
2
HOH
HOH
326
A
HOH
327
2
HOH
HOH
327
A
HOH
331
2
HOH
HOH
331
A
HOH
337
2
HOH
HOH
337
A
HOH
339
2
HOH
HOH
339
A
HOH
340
2
HOH
HOH
340
A
HOH
341
2
HOH
HOH
341
A
HOH
343
2
HOH
HOH
343
A
HOH
346
2
HOH
HOH
346
A
HOH
348
2
HOH
HOH
348
A
HOH
353
2
HOH
HOH
353
A
HOH
361
2
HOH
HOH
361
A
HOH
363
2
HOH
HOH
363
A
HOH
366
2
HOH
HOH
366
A
HOH
396
2
HOH
HOH
396
A
HOH
501
2
HOH
HOH
501
A
HOH
534
2
HOH
HOH
534
A
HOH
578
2
HOH
HOH
578
A
HOH
601
2
HOH
HOH
601
A
HOH
602
2
HOH
HOH
602
A
HOH
603
2
HOH
HOH
603
A
HOH
604
2
HOH
HOH
604
A
HOH
605
2
HOH
HOH
605
A
HOH
606
2
HOH
HOH
606
A
HOH
607
2
HOH
HOH
607
A
HOH
608
2
HOH
HOH
608
A
HOH
609
2
HOH
HOH
609
A
HOH
610
2
HOH
HOH
610
A
HOH
611
2
HOH
HOH
611
A
HOH
612
2
HOH
HOH
612
A
HOH
613
2
HOH
HOH
613
A
HOH
614
2
HOH
HOH
614
A
HOH
615
2
HOH
HOH
615
A
HOH
616
2
HOH
HOH
616
A
HOH
617
2
HOH
HOH
617
A
HOH
618
2
HOH
HOH
618
A
HOH
619
2
HOH
HOH
619
A
HOH
620
2
HOH
HOH
620
A
HOH
621
2
HOH
HOH
621
A
HOH
622
2
HOH
HOH
622
A
HOH
623
2
HOH
HOH
623
A
HOH
624
2
HOH
HOH
624
A
HOH
625
2
HOH
HOH
625
A
HOH
626
2
HOH
HOH
626
A
HOH
627
2
HOH
HOH
627
A
HOH
628
2
HOH
HOH
628
A
HOH
629
2
HOH
HOH
629
A
HOH
630
2
HOH
HOH
630
A
HOH
633
2
HOH
HOH
633
A
HOH
634
2
HOH
HOH
634
A
HOH
635
2
HOH
HOH
635
A
HOH
636
2
HOH
HOH
636
A
HOH
637
2
HOH
HOH
637
A
HOH
638
2
HOH
HOH
638
A
HOH
639
2
HOH
HOH
639
A
HOH
640
2
HOH
HOH
640
A
HOH
641
2
HOH
HOH
641
A
HOH
642
2
HOH
HOH
642
A
n
1
1
A
THR
2
n
2
THR
2
A
GLN
3
n
3
GLN
3
A
ILE
4
n
4
ILE
4
A
ASN
5
n
5
ASN
5
A
LEU
6
n
6
LEU
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
VAL
9
n
9
VAL
9
A
SER
10
n
10
SER
10
A
GLU
11
n
11
GLU
11
A
LEU
12
n
12
LEU
12
A
ALA
13
n
13
ALA
13
A
ASP
14
n
14
ASP
14
A
GLN
15
n
15
GLN
15
A
HIS
16
n
16
HIS
16
A
LEU
17
n
17
LEU
17
A
MET
18
n
18
MET
18
A
ALA
19
n
19
ALA
19
A
GLU
20
n
20
GLU
20
A
TYR
21
n
21
TYR
21
A
ARG
22
n
22
ARG
22
A
GLU
23
n
23
GLU
23
A
LEU
24
n
24
LEU
24
A
PRO
25
n
25
PRO
25
A
ARG
26
n
26
ARG
26
A
VAL
27
n
27
VAL
27
A
PHE
28
n
28
PHE
28
A
GLY
29
n
29
GLY
29
A
ALA
30
n
30
ALA
30
A
VAL
31
n
31
VAL
31
A
ARG
32
n
32
ARG
32
A
LYS
33
n
33
LYS
33
A
HIS
34
n
34
HIS
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
ASN
37
n
37
ASN
37
A
GLY
38
n
38
GLY
38
A
LYS
39
n
39
LYS
39
A
ARG
40
n
40
ARG
40
A
VAL
41
n
41
VAL
41
A
ARG
42
n
42
ARG
42
A
ASP
43
n
43
ASP
43
A
PHE
44
n
44
PHE
44
A
LYS
45
n
45
LYS
45
A
ILE
46
n
46
ILE
46
A
SER
47
n
47
SER
47
A
PRO
48
n
48
PRO
48
A
THR
49
n
49
THR
49
A
PHE
50
n
50
PHE
50
A
ILE
51
n
51
ILE
51
A
LEU
52
n
52
LEU
52
A
GLY
53
n
53
GLY
53
A
ALA
54
n
54
ALA
54
A
GLY
55
n
55
GLY
55
A
HIS
56
n
56
HIS
56
A
VAL
57
n
57
VAL
57
A
THR
58
n
58
THR
58
A
PHE
59
n
59
PHE
59
A
PHE
60
n
60
PHE
60
A
TYR
61
n
61
TYR
61
A
ASP
62
n
62
ASP
62
A
LYS
63
n
63
LYS
63
A
LEU
64
n
64
LEU
64
A
GLU
65
n
65
GLU
65
A
PHE
66
n
66
PHE
66
A
LEU
67
n
67
LEU
67
A
ARG
68
n
68
ARG
68
A
LYS
69
n
69
LYS
69
A
ARG
70
n
70
ARG
70
A
GLN
71
n
71
GLN
71
A
ILE
72
n
72
ILE
72
A
GLU
73
n
73
GLU
73
A
LEU
74
n
74
LEU
74
A
ILE
75
n
75
ILE
75
A
ALA
76
n
76
ALA
76
A
GLU
77
n
77
GLU
77
A
CYS
78
n
78
CYS
78
A
LEU
79
n
79
LEU
79
A
LYS
80
n
80
LYS
80
A
ARG
81
n
81
ARG
81
A
GLY
82
n
82
GLY
82
A
PHE
83
n
83
PHE
83
A
ASN
84
n
84
ASN
84
A
ILE
85
n
85
ILE
85
A
LYS
86
n
86
LYS
86
A
ASP
87
n
87
ASP
87
A
THR
88
n
88
THR
88
A
THR
89
n
89
THR
89
A
VAL
90
n
90
VAL
90
A
GLN
91
n
91
GLN
91
A
ASP
92
n
92
ASP
92
A
ILE
93
n
93
ILE
93
A
SER
94
n
94
SER
94
A
ASP
95
n
95
ASP
95
A
ILE
96
n
96
ILE
96
A
PRO
97
n
97
PRO
97
A
GLN
98
n
98
GLN
98
A
GLU
99
n
99
GLU
99
A
PHE
100
n
100
PHE
100
A
ARG
101
n
101
ARG
101
A
GLY
102
n
102
GLY
102
A
ASP
103
n
103
ASP
103
A
TYR
104
n
104
TYR
104
A
ILE
105
n
105
ILE
105
A
PRO
106
n
106
PRO
106
A
HIS
107
n
107
HIS
107
A
GLU
108
n
108
GLU
108
A
ALA
109
n
109
ALA
109
A
SER
110
n
110
SER
110
A
ILE
111
n
111
ILE
111
A
ALA
112
n
112
ALA
112
A
ILE
113
n
113
ILE
113
A
SER
114
n
114
SER
114
A
GLN
115
n
115
GLN
115
A
ALA
116
n
116
ALA
116
A
ARG
117
n
117
ARG
117
A
LEU
118
n
118
LEU
118
A
ASP
119
n
119
ASP
119
A
GLU
120
n
120
GLU
120
A
LYS
121
n
121
LYS
121
A
ILE
122
n
122
ILE
122
A
ALA
123
n
123
ALA
123
A
GLN
124
n
124
GLN
124
A
ARG
125
n
125
ARG
125
A
PRO
126
n
126
PRO
126
A
THR
127
n
127
THR
127
A
TRP
128
n
128
TRP
128
A
TYR
129
n
129
TYR
129
A
LYS
130
n
130
LYS
130
A
TYR
131
n
131
TYR
131
A
TYR
132
n
132
TYR
132
A
GLY
133
n
133
GLY
133
A
LYS
134
n
134
LYS
134
A
ALA
135
n
135
ALA
135
A
ILE
136
n
136
ILE
136
A
TYR
137
n
137
TYR
137
A
ALA
138
n
138
ALA
138
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
1
A
MET
1
1
Y
1
A
A
O
O
LEU
HOH
6
145
2.16
1
-3.40
0.50
120.30
116.90
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
22
22
22
N
1
14.27
1.40
123.60
137.87
A
A
A
CD
NE
CZ
ARG
ARG
ARG
26
26
26
N
1
5.43
0.50
120.30
125.73
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
26
26
26
N
1
15.49
2.50
121.70
137.19
A
A
A
C
N
CA
GLY
ALA
ALA
53
54
54
Y
1
3.69
0.50
120.30
123.99
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
70
70
70
N
1
9.29
0.50
120.30
129.59
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
81
81
81
N
1
-4.99
0.50
120.30
115.31
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
81
81
81
N
1
-5.89
0.90
118.30
112.41
A
A
A
CB
CG
OD2
ASP
ASP
ASP
87
87
87
N
1
8.72
0.90
118.30
127.02
A
A
A
CB
CG
OD1
ASP
ASP
ASP
95
95
95
N
1
-6.70
0.90
118.30
111.60
A
A
A
CB
CG
OD2
ASP
ASP
ASP
95
95
95
N
1
-3.49
0.50
120.30
116.81
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
101
101
101
N
1
3.13
0.50
120.30
123.43
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
117
117
117
N
1
14.42
1.40
123.60
138.02
A
A
A
CD
NE
CZ
ARG
ARG
ARG
125
125
125
N
1
16.94
1.90
113.70
130.64
A
A
A
CA
CB
CG
TRP
TRP
TRP
128
128
128
N
1
A
A
O
O
HOH
HOH
639
640
1.84
1_555
2_455
1
A
A
OE1
OH
GLU
TYR
108
129
2.00
1_555
2_556
1
A
GLN
98
-37.67
-36.36
1
A
ARG
125
-164.69
91.97
0.1900000
2.20
10.0
5446
1
2.
2.20
10.0
111
1238
0
0
1127
0.015
0.020
0.036
0.030
0.047
0.050
0.585
1.500
0.987
2.000
0.639
2.000
1.090
2.500
0.007
0.020
0.041
0.150
0.190
0.300
0.212
0.300
0.256
0.300
1.300
3.000
21.900
15.00
35.800
20.00
refinement
PROLSQ
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
1
N
N
2
N
N
A
ASP
14
A
ASP
14
HELX_P
A
GLY
38
A
GLY
38
1
H1
25
A
LEU
64
A
LEU
64
HELX_P
A
GLY
82
A
GLY
82
1
H2
19
A
GLU
108
A
GLU
108
HELX_P
A
GLN
124
A
GLN
124
1
H3
17
ENDONUCLEASE
ENDONUCLEASE
END5_BPT4
UNP
1
1
P04418
MTRINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLK
RGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
1
138
1ENI
1
138
P04418
A
1
1
138
1
ARG
conflict
GLN
3
1ENI
A
P04418
UNP
3
3
4
P 1 21 1