0.024155
0.000000
0.000148
0.000000
0.024938
0.000000
0.000000
0.000000
0.026738
0.00000
0.00000
0.00000
Vassylyev, D.G.
Ariyoshi, M.
Matsumoto, O.
Katayanagi, K.
Ohtsuka, E.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
90.35
90.00
41.400
40.100
37.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
249
360
375
10.1006/jmbi.1995.0302
7783199
Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants.
1995
UK
Curr.Opin.Struct.Biol.
COSBEF
0801
0959-440X
3
17
DNA Repair Enzymes
1993
US
Science
SCIEAS
0038
0036-8075
256
523
X-Ray Structure of T4 Endonuclease V: An Excision Repair Enzyme Specific for a Pyrimidine Dimer
1992
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
89
9420
Role of the Basic Amino Acid Cluster and Glu-23 in Pyrimidine Dimeer Glycosylase Activity of T4 Endonuclease V
1992
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
202
683
Preliminary Crystallographic Study of Pyrimidine Dimer-Specific Excision-Repair Enzyme from Bacteriophage T4
1988
10.2210/pdb1enj/pdb
pdb_00001enj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
16103.590
ENDONUCLEASE V
3.1.25.1
1
man
polymer
18.015
water
98
nat
water
no
no
MTRINLTLVSELADQHLMAEYRQLPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLK
RGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
MTRINLTLVSELADQHLMAEYRQLPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLK
RGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
sample
10665
Enterobacteria phage T4
1.93
36.18
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Other
1
0
1994-10-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
Y
BNL
1994-08-08
REL
HOH
water
HOH
139
2
HOH
HOH
139
A
HOH
140
2
HOH
HOH
140
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
144
2
HOH
HOH
144
A
HOH
145
2
HOH
HOH
145
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
154
2
HOH
HOH
154
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
159
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
164
2
HOH
HOH
164
A
HOH
167
2
HOH
HOH
167
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
179
2
HOH
HOH
179
A
HOH
182
2
HOH
HOH
182
A
HOH
183
2
HOH
HOH
183
A
HOH
190
2
HOH
HOH
190
A
HOH
192
2
HOH
HOH
192
A
HOH
204
2
HOH
HOH
204
A
HOH
206
2
HOH
HOH
206
A
HOH
209
2
HOH
HOH
209
A
HOH
212
2
HOH
HOH
212
A
HOH
222
2
HOH
HOH
222
A
HOH
224
2
HOH
HOH
224
A
HOH
229
2
HOH
HOH
229
A
HOH
237
2
HOH
HOH
237
A
HOH
238
2
HOH
HOH
238
A
HOH
242
2
HOH
HOH
242
A
HOH
248
2
HOH
HOH
248
A
HOH
256
2
HOH
HOH
256
A
HOH
260
2
HOH
HOH
260
A
HOH
261
2
HOH
HOH
261
A
HOH
264
2
HOH
HOH
264
A
HOH
298
2
HOH
HOH
298
A
HOH
299
2
HOH
HOH
299
A
HOH
305
2
HOH
HOH
305
A
HOH
315
2
HOH
HOH
315
A
HOH
317
2
HOH
HOH
317
A
HOH
319
2
HOH
HOH
319
A
HOH
322
2
HOH
HOH
322
A
HOH
323
2
HOH
HOH
323
A
HOH
325
2
HOH
HOH
325
A
HOH
331
2
HOH
HOH
331
A
HOH
337
2
HOH
HOH
337
A
HOH
339
2
HOH
HOH
339
A
HOH
340
2
HOH
HOH
340
A
HOH
341
2
HOH
HOH
341
A
HOH
344
2
HOH
HOH
344
A
HOH
348
2
HOH
HOH
348
A
HOH
353
2
HOH
HOH
353
A
HOH
355
2
HOH
HOH
355
A
HOH
361
2
HOH
HOH
361
A
HOH
396
2
HOH
HOH
396
A
HOH
401
2
HOH
HOH
401
A
HOH
434
2
HOH
HOH
434
A
HOH
478
2
HOH
HOH
478
A
HOH
479
2
HOH
HOH
479
A
HOH
480
2
HOH
HOH
480
A
HOH
481
2
HOH
HOH
481
A
HOH
482
2
HOH
HOH
482
A
HOH
483
2
HOH
HOH
483
A
HOH
484
2
HOH
HOH
484
A
HOH
485
2
HOH
HOH
485
A
HOH
486
2
HOH
HOH
486
A
HOH
487
2
HOH
HOH
487
A
HOH
488
2
HOH
HOH
488
A
HOH
489
2
HOH
HOH
489
A
HOH
490
2
HOH
HOH
490
A
HOH
491
2
HOH
HOH
491
A
HOH
492
2
HOH
HOH
492
A
HOH
493
2
HOH
HOH
493
A
HOH
494
2
HOH
HOH
494
A
HOH
495
2
HOH
HOH
495
A
HOH
496
2
HOH
HOH
496
A
HOH
497
2
HOH
HOH
497
A
HOH
498
2
HOH
HOH
498
A
HOH
499
2
HOH
HOH
499
A
HOH
500
2
HOH
HOH
500
A
HOH
501
2
HOH
HOH
501
A
HOH
502
2
HOH
HOH
502
A
HOH
503
2
HOH
HOH
503
A
HOH
504
2
HOH
HOH
504
A
HOH
505
2
HOH
HOH
505
A
HOH
506
2
HOH
HOH
506
A
HOH
507
2
HOH
HOH
507
A
HOH
508
2
HOH
HOH
508
A
HOH
509
2
HOH
HOH
509
A
HOH
510
2
HOH
HOH
510
A
HOH
511
2
HOH
HOH
511
A
n
1
1
A
THR
2
n
2
THR
2
A
ARG
3
n
3
ARG
3
A
ILE
4
n
4
ILE
4
A
ASN
5
n
5
ASN
5
A
LEU
6
n
6
LEU
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
VAL
9
n
9
VAL
9
A
SER
10
n
10
SER
10
A
GLU
11
n
11
GLU
11
A
LEU
12
n
12
LEU
12
A
ALA
13
n
13
ALA
13
A
ASP
14
n
14
ASP
14
A
GLN
15
n
15
GLN
15
A
HIS
16
n
16
HIS
16
A
LEU
17
n
17
LEU
17
A
MET
18
n
18
MET
18
A
ALA
19
n
19
ALA
19
A
GLU
20
n
20
GLU
20
A
TYR
21
n
21
TYR
21
A
ARG
22
n
22
ARG
22
A
GLN
23
n
23
GLN
23
A
LEU
24
n
24
LEU
24
A
PRO
25
n
25
PRO
25
A
ARG
26
n
26
ARG
26
A
VAL
27
n
27
VAL
27
A
PHE
28
n
28
PHE
28
A
GLY
29
n
29
GLY
29
A
ALA
30
n
30
ALA
30
A
VAL
31
n
31
VAL
31
A
ARG
32
n
32
ARG
32
A
LYS
33
n
33
LYS
33
A
HIS
34
n
34
HIS
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
ASN
37
n
37
ASN
37
A
GLY
38
n
38
GLY
38
A
LYS
39
n
39
LYS
39
A
ARG
40
n
40
ARG
40
A
VAL
41
n
41
VAL
41
A
ARG
42
n
42
ARG
42
A
ASP
43
n
43
ASP
43
A
PHE
44
n
44
PHE
44
A
LYS
45
n
45
LYS
45
A
ILE
46
n
46
ILE
46
A
SER
47
n
47
SER
47
A
PRO
48
n
48
PRO
48
A
THR
49
n
49
THR
49
A
PHE
50
n
50
PHE
50
A
ILE
51
n
51
ILE
51
A
LEU
52
n
52
LEU
52
A
GLY
53
n
53
GLY
53
A
ALA
54
n
54
ALA
54
A
GLY
55
n
55
GLY
55
A
HIS
56
n
56
HIS
56
A
VAL
57
n
57
VAL
57
A
THR
58
n
58
THR
58
A
PHE
59
n
59
PHE
59
A
PHE
60
n
60
PHE
60
A
TYR
61
n
61
TYR
61
A
ASP
62
n
62
ASP
62
A
LYS
63
n
63
LYS
63
A
LEU
64
n
64
LEU
64
A
GLU
65
n
65
GLU
65
A
PHE
66
n
66
PHE
66
A
LEU
67
n
67
LEU
67
A
ARG
68
n
68
ARG
68
A
LYS
69
n
69
LYS
69
A
ARG
70
n
70
ARG
70
A
GLN
71
n
71
GLN
71
A
ILE
72
n
72
ILE
72
A
GLU
73
n
73
GLU
73
A
LEU
74
n
74
LEU
74
A
ILE
75
n
75
ILE
75
A
ALA
76
n
76
ALA
76
A
GLU
77
n
77
GLU
77
A
CYS
78
n
78
CYS
78
A
LEU
79
n
79
LEU
79
A
LYS
80
n
80
LYS
80
A
ARG
81
n
81
ARG
81
A
GLY
82
n
82
GLY
82
A
PHE
83
n
83
PHE
83
A
ASN
84
n
84
ASN
84
A
ILE
85
n
85
ILE
85
A
LYS
86
n
86
LYS
86
A
ASP
87
n
87
ASP
87
A
THR
88
n
88
THR
88
A
THR
89
n
89
THR
89
A
VAL
90
n
90
VAL
90
A
GLN
91
n
91
GLN
91
A
ASP
92
n
92
ASP
92
A
ILE
93
n
93
ILE
93
A
SER
94
n
94
SER
94
A
ASP
95
n
95
ASP
95
A
ILE
96
n
96
ILE
96
A
PRO
97
n
97
PRO
97
A
GLN
98
n
98
GLN
98
A
GLU
99
n
99
GLU
99
A
PHE
100
n
100
PHE
100
A
ARG
101
n
101
ARG
101
A
GLY
102
n
102
GLY
102
A
ASP
103
n
103
ASP
103
A
TYR
104
n
104
TYR
104
A
ILE
105
n
105
ILE
105
A
PRO
106
n
106
PRO
106
A
HIS
107
n
107
HIS
107
A
GLU
108
n
108
GLU
108
A
ALA
109
n
109
ALA
109
A
SER
110
n
110
SER
110
A
ILE
111
n
111
ILE
111
A
ALA
112
n
112
ALA
112
A
ILE
113
n
113
ILE
113
A
SER
114
n
114
SER
114
A
GLN
115
n
115
GLN
115
A
ALA
116
n
116
ALA
116
A
ARG
117
n
117
ARG
117
A
LEU
118
n
118
LEU
118
A
ASP
119
n
119
ASP
119
A
GLU
120
n
120
GLU
120
A
LYS
121
n
121
LYS
121
A
ILE
122
n
122
ILE
122
A
ALA
123
n
123
ALA
123
A
GLN
124
n
124
GLN
124
A
ARG
125
n
125
ARG
125
A
PRO
126
n
126
PRO
126
A
THR
127
n
127
THR
127
A
TRP
128
n
128
TRP
128
A
TYR
129
n
129
TYR
129
A
LYS
130
n
130
LYS
130
A
TYR
131
n
131
TYR
131
A
TYR
132
n
132
TYR
132
A
GLY
133
n
133
GLY
133
A
LYS
134
n
134
LYS
134
A
ALA
135
n
135
ALA
135
A
ILE
136
n
136
ILE
136
A
TYR
137
n
137
TYR
137
A
ALA
138
n
138
ALA
138
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
1
A
MET
1
1
Y
1
15.11
2.10
111.80
126.91
A
A
A
CG
CD
NE
ARG
ARG
ARG
26
26
26
N
1
13.06
1.40
123.60
136.66
A
A
A
CD
NE
CZ
ARG
ARG
ARG
26
26
26
N
1
8.07
0.50
120.30
128.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
40
40
40
N
1
-5.80
0.50
120.30
114.50
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
40
40
40
N
1
3.59
0.50
120.30
123.89
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
42
42
42
N
1
14.70
2.20
113.40
128.10
A
A
A
CA
CB
CG
GLU
GLU
GLU
77
77
77
N
1
3.74
0.50
120.30
124.04
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
81
81
81
N
1
13.68
2.20
113.40
127.08
A
A
A
CA
CB
CG
ASP
ASP
ASP
87
87
87
N
1
-3.40
0.50
120.30
116.90
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
101
101
101
N
1
-3.94
0.50
120.30
116.36
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
117
117
117
N
1
5.56
0.50
120.30
125.86
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
125
125
125
N
1
14.02
1.90
113.70
127.72
A
A
A
CA
CB
CG
TRP
TRP
TRP
128
128
128
N
1
A
ALA
54
-8.55
-91.32
1
A
ASP
87
124.85
90.25
0.2210000
1.8
10.0
7922
1
2.
1.8
10.0
98
1227
0
0
1129
0.017
0.020
0.036
0.030
0.044
0.050
0.789
1.500
1.331
2.000
0.783
2.000
1.200
2.500
0.004
0.020
0.021
0.150
0.203
0.300
0.220
0.300
0.253
0.300
1.400
3.000
24.100
15.00
31.800
20.00
refinement
PROLSQ
CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS
1
N
N
2
N
N
A
ASP
14
A
ASP
14
HELX_P
A
GLY
38
A
GLY
38
1
H1
25
A
LEU
64
A
LEU
64
HELX_P
A
GLY
82
A
GLY
82
1
H2
19
A
GLU
108
A
GLU
108
HELX_P
A
GLN
124
A
GLN
124
1
H3
17
ENDONUCLEASE
ENDONUCLEASE
END5_BPT4
UNP
1
1
P04418
MTRINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLK
RGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
1
138
1ENJ
1
138
P04418
A
1
1
138
1
GLU
conflict
GLN
23
1ENJ
A
P04418
UNP
23
23
4
P 1 21 1