0.014124 0.000000 0.002541 0.000000 0.013889 0.000000 0.000000 0.000000 0.013938 0.00000 0.00000 0.00000 Slon-Usakiewicz, J.J. Sivaraman, J. Li, Y. Cygler, M. Konishi, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.20 90.00 70.800 72.000 72.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 O3 S 214.281 4-TERT-BUTYLBENZENESULFONIC ACID non-polymer C6 H11 N O2 129.157 6-CARBOXYPIPERIDINE D-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C12 H25 N O2 215.332 12-AMINO-DODECANOIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C7 H9 N O2 S 171.217 n BETA(2-THIENYL)ALANINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N C N 77 N C Y 78 N C Y 79 N C Y 80 N C Y 81 N C Y 82 N C Y 83 N C N 84 N S N 85 N O N 86 N O N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N N N 103 N C N 104 N C N 105 N C N 106 N C N 107 R C N 108 N C N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N O N 121 N H N 122 N N N 123 R C N 124 N C N 125 N O N 126 N C N 127 N S N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 N C N 138 N C N 139 N C N 140 N C N 141 N C N 142 N C N 143 N C N 144 N C N 145 N C N 146 N C N 147 N C N 148 N C N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N O N 184 N N N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N N N 197 S C N 198 N C N 199 N O N 200 N C N 201 N C N 202 N C N 203 N O N 204 N O N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 N C N 217 N C N 218 N O N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C Y 230 N C Y 231 N N Y 232 N C Y 233 N C Y 234 N N N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N O N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 S C N 254 N C N 255 N C N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N C N 301 N N N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N S N 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N C N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 R C N 397 N O N 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N O N 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N S N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N N Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C Y 466 N C N 467 N O N 468 N O N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N N N 481 S C N 482 N C N 483 N O N 484 N C N 485 N C N 486 N C N 487 N O N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing Y 83 N doub Y 84 N sing N 85 N sing Y 86 N sing N 87 N sing Y 88 N doub N 89 N sing Y 90 N sing N 91 N sing Y 92 N doub N 93 N sing N 94 N doub N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing Y 227 N sing Y 228 N doub Y 229 N doub N 230 N sing Y 231 N sing N 232 N sing Y 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing Y 335 N doub Y 336 N sing Y 337 N sing N 338 N sing Y 339 N doub N 340 N sing Y 341 N doub N 342 N sing Y 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N sing Y 433 N doub N 434 N sing Y 435 N doub N 436 N sing Y 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing Y 452 N doub Y 453 N sing Y 454 N sing N 455 N sing Y 456 N doub N 457 N sing Y 458 N doub N 459 N sing Y 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N doub N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing US Biochemistry BICHAW 0033 0006-2960 39 2384 2391 10.1021/bi992419b 10694407 Design of P1' and P3' residues of trivalent thrombin inhibitors and their crystal structures. 2000 10.2210/pdb1eoj/pdb pdb_00001eoj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 IMAGE PLATE 1996-03-18 RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 33208.094 ALPHA THROMBIN 3.4.21.5 1 nat polymer 1877.203 THROMBIN INHIBITOR P798 1 syn polymer 18.015 water 160 nat water no no GGADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYP PWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAAS LLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGP FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF GGADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYP PWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAAS LLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGP FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQF A polypeptide(L) no yes (BBS)R(CPI)(TIH)(DOA)DYEPIPEEA XRXAXDYEPIPEEA B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens 1 2.62 53.04 VAPOR DIFFUSION, HANGING DROP 5.5 PEG 4000, Potassium sulfate, citric acid pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 software atom_site chem_comp_atom chem_comp_bond database_2 pdbx_validate_main_chain_plane pdbx_validate_rmsd_angle pdbx_validate_torsion struct_conn struct_ref_seq_dif repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Refinement description Atomic model Data collection Database references Derived calculations 1 0 2000-05-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details Thrombin - hirutonin-2 complex RCSB Y RCSB 2000-03-23 REL REL HOH water This sequence was chemically synthesized sample HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 334 3 HOH HOH 334 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 349 3 HOH HOH 349 A HOH 350 3 HOH HOH 350 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 354 3 HOH HOH 354 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 365 3 HOH HOH 365 A HOH 366 3 HOH HOH 366 A HOH 367 3 HOH HOH 367 A HOH 368 3 HOH HOH 368 A HOH 369 3 HOH HOH 369 A HOH 370 3 HOH HOH 370 A HOH 371 3 HOH HOH 371 A HOH 372 3 HOH HOH 372 A HOH 373 3 HOH HOH 373 A HOH 374 3 HOH HOH 374 A HOH 375 3 HOH HOH 375 A HOH 376 3 HOH HOH 376 A HOH 377 3 HOH HOH 377 A HOH 378 3 HOH HOH 378 A HOH 379 3 HOH HOH 379 A HOH 380 3 HOH HOH 380 A HOH 381 3 HOH HOH 381 A HOH 382 3 HOH HOH 382 A HOH 383 3 HOH HOH 383 A HOH 384 3 HOH HOH 384 A HOH 385 3 HOH HOH 385 A HOH 386 3 HOH HOH 386 A HOH 387 3 HOH HOH 387 A HOH 388 3 HOH HOH 388 A HOH 389 3 HOH HOH 389 A HOH 390 3 HOH HOH 390 A HOH 391 3 HOH HOH 391 A HOH 392 3 HOH HOH 392 A HOH 393 3 HOH HOH 393 A HOH 394 3 HOH HOH 394 A HOH 395 3 HOH HOH 395 A HOH 396 3 HOH HOH 396 A HOH 397 3 HOH HOH 397 A HOH 398 3 HOH HOH 398 A HOH 40 3 HOH HOH 40 B HOH 47 3 HOH HOH 47 B HOH 49 3 HOH HOH 49 B HOH 71 3 HOH HOH 71 B HOH 89 3 HOH HOH 89 B HOH 142 3 HOH HOH 142 B HOH 158 3 HOH HOH 158 B GLY 1 n 1 D GLY 1 A GLY 1 n 2 C GLY 1 A ALA 1 n 3 B ALA 1 A ASP 1 n 4 A ASP 1 A CYS 1 n 5 CYS 1 A GLY 2 n 6 GLY 2 A LEU 3 n 7 LEU 3 A ARG 4 n 8 ARG 4 A PRO 5 n 9 PRO 5 A LEU 6 n 10 LEU 6 A PHE 7 n 11 PHE 7 A GLU 8 n 12 GLU 8 A LYS 9 n 13 LYS 9 A LYS 10 n 14 LYS 10 A SER 11 n 15 SER 11 A LEU 12 n 16 LEU 12 A GLU 13 n 17 GLU 13 A ASP 14 n 18 ASP 14 A LYS 14 n 19 A LYS 14 A THR 14 n 20 B THR 14 A GLU 14 n 21 C GLU 14 A ARG 14 n 22 D ARG 14 A GLU 14 n 23 E GLU 14 A LEU 14 n 24 F LEU 14 A LEU 14 n 25 G LEU 14 A GLU 14 n 26 H GLU 14 A SER 14 n 27 I SER 14 A TYR 14 n 28 J TYR 14 A ILE 14 n 29 K ILE 14 A n 30 L 14 A n 31 M 14 A n 32 N 14 A ILE 16 n 33 ILE 16 A VAL 17 n 34 VAL 17 A GLU 18 n 35 GLU 18 A GLY 19 n 36 GLY 19 A SER 20 n 37 SER 20 A ASP 21 n 38 ASP 21 A ALA 22 n 39 ALA 22 A GLU 23 n 40 GLU 23 A ILE 24 n 41 ILE 24 A GLY 25 n 42 GLY 25 A MET 26 n 43 MET 26 A SER 27 n 44 SER 27 A PRO 28 n 45 PRO 28 A TRP 29 n 46 TRP 29 A GLN 30 n 47 GLN 30 A VAL 31 n 48 VAL 31 A MET 32 n 49 MET 32 A LEU 33 n 50 LEU 33 A PHE 34 n 51 PHE 34 A ARG 35 n 52 ARG 35 A LYS 36 n 53 LYS 36 A SER 36 n 54 A SER 36 A PRO 37 n 55 PRO 37 A GLN 38 n 56 GLN 38 A GLU 39 n 57 GLU 39 A LEU 40 n 58 LEU 40 A LEU 41 n 59 LEU 41 A CYS 42 n 60 CYS 42 A GLY 43 n 61 GLY 43 A ALA 44 n 62 ALA 44 A SER 45 n 63 SER 45 A LEU 46 n 64 LEU 46 A ILE 47 n 65 ILE 47 A SER 48 n 66 SER 48 A ASP 49 n 67 ASP 49 A ARG 50 n 68 ARG 50 A TRP 51 n 69 TRP 51 A VAL 52 n 70 VAL 52 A LEU 53 n 71 LEU 53 A THR 54 n 72 THR 54 A ALA 55 n 73 ALA 55 A ALA 56 n 74 ALA 56 A HIS 57 n 75 HIS 57 A CYS 58 n 76 CYS 58 A LEU 59 n 77 LEU 59 A LEU 60 n 78 LEU 60 A TYR 60 n 79 A TYR 60 A PRO 60 n 80 B PRO 60 A PRO 60 n 81 C PRO 60 A TRP 60 n 82 D TRP 60 A ASP 60 n 83 E ASP 60 A LYS 60 n 84 F LYS 60 A ASN 60 n 85 G ASN 60 A PHE 60 n 86 H PHE 60 A THR 60 n 87 I THR 60 A GLU 61 n 88 GLU 61 A ASN 62 n 89 ASN 62 A ASP 63 n 90 ASP 63 A LEU 64 n 91 LEU 64 A LEU 65 n 92 LEU 65 A VAL 66 n 93 VAL 66 A ARG 67 n 94 ARG 67 A ILE 68 n 95 ILE 68 A GLY 69 n 96 GLY 69 A LYS 70 n 97 LYS 70 A HIS 71 n 98 HIS 71 A SER 72 n 99 SER 72 A ARG 73 n 100 ARG 73 A THR 74 n 101 THR 74 A ARG 75 n 102 ARG 75 A TYR 76 n 103 TYR 76 A GLU 77 n 104 GLU 77 A ARG 77 n 105 A ARG 77 A ASN 78 n 106 ASN 78 A ILE 79 n 107 ILE 79 A GLU 80 n 108 GLU 80 A LYS 81 n 109 LYS 81 A ILE 82 n 110 ILE 82 A SER 83 n 111 SER 83 A MET 84 n 112 MET 84 A LEU 85 n 113 LEU 85 A GLU 86 n 114 GLU 86 A LYS 87 n 115 LYS 87 A ILE 88 n 116 ILE 88 A TYR 89 n 117 TYR 89 A ILE 90 n 118 ILE 90 A HIS 91 n 119 HIS 91 A PRO 92 n 120 PRO 92 A ARG 93 n 121 ARG 93 A TYR 94 n 122 TYR 94 A ASN 95 n 123 ASN 95 A TRP 96 n 124 TRP 96 A ARG 97 n 125 ARG 97 A GLU 97 n 126 A GLU 97 A ASN 98 n 127 ASN 98 A LEU 99 n 128 LEU 99 A ASP 100 n 129 ASP 100 A ARG 101 n 130 ARG 101 A ASP 102 n 131 ASP 102 A ILE 103 n 132 ILE 103 A ALA 104 n 133 ALA 104 A LEU 105 n 134 LEU 105 A MET 106 n 135 MET 106 A LYS 107 n 136 LYS 107 A LEU 108 n 137 LEU 108 A LYS 109 n 138 LYS 109 A LYS 110 n 139 LYS 110 A PRO 111 n 140 PRO 111 A VAL 112 n 141 VAL 112 A ALA 113 n 142 ALA 113 A PHE 114 n 143 PHE 114 A SER 115 n 144 SER 115 A ASP 116 n 145 ASP 116 A TYR 117 n 146 TYR 117 A ILE 118 n 147 ILE 118 A HIS 119 n 148 HIS 119 A PRO 120 n 149 PRO 120 A VAL 121 n 150 VAL 121 A CYS 122 n 151 CYS 122 A LEU 123 n 152 LEU 123 A PRO 124 n 153 PRO 124 A ASP 125 n 154 ASP 125 A ARG 126 n 155 ARG 126 A GLU 127 n 156 GLU 127 A THR 128 n 157 THR 128 A ALA 129 n 158 ALA 129 A ALA 129 n 159 A ALA 129 A SER 129 n 160 B SER 129 A LEU 129 n 161 C LEU 129 A LEU 130 n 162 LEU 130 A GLN 131 n 163 GLN 131 A ALA 132 n 164 ALA 132 A GLY 133 n 165 GLY 133 A TYR 134 n 166 TYR 134 A LYS 135 n 167 LYS 135 A GLY 136 n 168 GLY 136 A ARG 137 n 169 ARG 137 A VAL 138 n 170 VAL 138 A THR 139 n 171 THR 139 A GLY 140 n 172 GLY 140 A TRP 141 n 173 TRP 141 A GLY 142 n 174 GLY 142 A ASN 143 n 175 ASN 143 A LEU 144 n 176 LEU 144 A LYS 145 n 177 LYS 145 A GLU 146 n 178 GLU 146 A n 179 A 146 A n 180 B 146 A n 181 C 146 A n 182 D 146 A n 183 E 146 A n 184 F 146 A n 185 G 146 A n 186 H 146 A GLY 150 n 187 GLY 150 A GLN 151 n 188 GLN 151 A PRO 152 n 189 PRO 152 A SER 153 n 190 SER 153 A VAL 154 n 191 VAL 154 A LEU 155 n 192 LEU 155 A GLN 156 n 193 GLN 156 A VAL 157 n 194 VAL 157 A VAL 158 n 195 VAL 158 A ASN 159 n 196 ASN 159 A LEU 160 n 197 LEU 160 A PRO 161 n 198 PRO 161 A ILE 162 n 199 ILE 162 A VAL 163 n 200 VAL 163 A GLU 164 n 201 GLU 164 A ARG 165 n 202 ARG 165 A PRO 166 n 203 PRO 166 A VAL 167 n 204 VAL 167 A CYS 168 n 205 CYS 168 A LYS 169 n 206 LYS 169 A ASP 170 n 207 ASP 170 A SER 171 n 208 SER 171 A THR 172 n 209 THR 172 A ARG 173 n 210 ARG 173 A ILE 174 n 211 ILE 174 A ARG 175 n 212 ARG 175 A ILE 176 n 213 ILE 176 A THR 177 n 214 THR 177 A ASP 178 n 215 ASP 178 A ASN 179 n 216 ASN 179 A MET 180 n 217 MET 180 A PHE 181 n 218 PHE 181 A CYS 182 n 219 CYS 182 A ALA 183 n 220 ALA 183 A GLY 184 n 221 GLY 184 A TYR 184 n 222 A TYR 184 A LYS 185 n 223 LYS 185 A PRO 186 n 224 PRO 186 A ASP 186 n 225 A ASP 186 A GLU 186 n 226 B GLU 186 A GLY 186 n 227 C GLY 186 A LYS 186 n 228 D LYS 186 A ARG 187 n 229 ARG 187 A GLY 188 n 230 GLY 188 A ASP 189 n 231 ASP 189 A ALA 190 n 232 ALA 190 A CYS 191 n 233 CYS 191 A GLU 192 n 234 GLU 192 A GLY 193 n 235 GLY 193 A ASP 194 n 236 ASP 194 A SER 195 n 237 SER 195 A GLY 196 n 238 GLY 196 A GLY 197 n 239 GLY 197 A PRO 198 n 240 PRO 198 A PHE 199 n 241 PHE 199 A VAL 200 n 242 VAL 200 A MET 201 n 243 MET 201 A LYS 202 n 244 LYS 202 A SER 203 n 245 SER 203 A PRO 204 n 246 PRO 204 A PHE 204 n 247 A PHE 204 A ASN 204 n 248 B ASN 204 A ASN 205 n 249 ASN 205 A ARG 206 n 250 ARG 206 A TRP 207 n 251 TRP 207 A TYR 208 n 252 TYR 208 A GLN 209 n 253 GLN 209 A MET 210 n 254 MET 210 A GLY 211 n 255 GLY 211 A ILE 212 n 256 ILE 212 A VAL 213 n 257 VAL 213 A SER 214 n 258 SER 214 A TRP 215 n 259 TRP 215 A GLY 216 n 260 GLY 216 A GLU 217 n 261 GLU 217 A GLY 219 n 262 GLY 219 A CYS 220 n 263 CYS 220 A ASP 221 n 264 ASP 221 A ARG 221 n 265 A ARG 221 A ASP 222 n 266 ASP 222 A GLY 223 n 267 GLY 223 A LYS 224 n 268 LYS 224 A TYR 225 n 269 TYR 225 A GLY 226 n 270 GLY 226 A PHE 227 n 271 PHE 227 A TYR 228 n 272 TYR 228 A THR 229 n 273 THR 229 A HIS 230 n 274 HIS 230 A VAL 231 n 275 VAL 231 A PHE 232 n 276 PHE 232 A ARG 233 n 277 ARG 233 A LEU 234 n 278 LEU 234 A LYS 235 n 279 LYS 235 A LYS 236 n 280 LYS 236 A TRP 237 n 281 TRP 237 A ILE 238 n 282 ILE 238 A GLN 239 n 283 GLN 239 A LYS 240 n 284 LYS 240 A VAL 241 n 285 VAL 241 A ILE 242 n 286 ILE 242 A ASP 243 n 287 ASP 243 A GLN 244 n 288 GLN 244 A PHE 245 n 289 PHE 245 A BBS 1 n 1 BBS 1 B ARG 2 n 2 ARG 2 B CPI 3 n 3 CPI 3 B TIH 4 n 4 TIH 4 B DOA 5 n 5 DOA 5 B ASP 6 n 6 ASP 6 B TYR 7 n 7 TYR 7 B GLU 8 n 8 GLU 8 B PRO 9 n 9 PRO 9 B ILE 10 n 10 ILE 10 B PRO 11 n 11 PRO 11 B GLU 12 n 12 GLU 12 B GLU 13 n 13 GLU 13 B ALA 14 n 14 ALA 14 B author_defined_assembly 2 dimeric B TIH 4 BETA(2-THIENYL)ALANINE B TIH 4 ALA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 20 A O SER 37 A N VAL 157 A N VAL 194 A O LEU 160 A O LEU 197 A N GLY 136 A N GLY 168 A N THR 139 A N THR 171 A O PRO 198 A O PRO 240 A O MET 201 A O MET 243 A N TYR 208 A N TYR 252 A O TRP 215 A O TRP 259 A N PHE 227 A N PHE 271 A N TYR 228 A N TYR 272 A O PHE 181 A O PHE 218 A N ARG 35 A N ARG 52 A O GLU 39 A O GLU 57 A O SER 45 A O SER 63 A N LEU 53 A N LEU 71 A N THR 54 A N THR 72 A O ALA 104 A O ALA 133 A O LYS 107 A O LYS 136 A N GLU 86 A N GLU 114 A N LEU 85 A N LEU 113 A O LEU 64 A O LEU 91 A N ARG 67 A N ARG 94 A O MET 32 A O MET 49 A A N TYR 60 A N TYR 79 F A O LYS 60 A O LYS 84 L 1 A ASP 14 A ASP 30 1 Y M 1 A GLY 14 A GLY 31 1 Y N 1 A ARG 14 A ARG 32 1 Y A 1 A THR 146 A THR 179 1 Y B 1 A TRP 146 A TRP 180 1 Y C 1 A THR 146 A THR 181 1 Y D 1 A ALA 146 A ALA 182 1 Y E 1 A ASN 146 A ASN 183 1 Y F 1 A VAL 146 A VAL 184 1 Y G 1 A GLY 146 A GLY 185 1 Y H 1 A LYS 146 A LYS 186 1 Y A 1 -11.20 1.50 119.30 108.10 A A A C N CA SER PRO PRO 36 37 37 Y 1 4.72 0.50 120.30 125.02 A A A NE CZ NH1 ARG ARG ARG 75 75 75 N 1 B B N CA ARG ARG 2 2 0.125 0.020 1.459 1.584 N 1 A PHE 7 -127.32 -85.01 A 1 A SER 36 -59.72 -104.29 1 A GLN 38 -47.17 93.87 G 1 A ASN 60 -160.34 87.49 1 A HIS 71 -135.98 -50.43 1 A ASN 78 74.86 -1.68 A 1 A GLU 97 -123.65 -67.96 1 A SER 115 -164.28 -167.12 1 A SER 214 -102.72 -85.94 1 B CPI 3 104.64 156.89 0.233 0.187 2.1 8.0 2006 20427 18421 95.8 Random 1 2.0 1.0 Engh & Huber 2.1 8.0 160 2540 0 0 2380 0.009 1.718 24.372 2.1 45.0 1EOJ 70010 20426 0.3 0.05 1 18.0 3 95.8 0.13 2.10 2.17 1530 1 2 73.0 data scaling SCALEPACK model building X-PLOR refinement X-PLOR 3.843 phasing X-PLOR Design of P1' and P3' residues of trivalent thrombin inhibitors and their crystal structures 1 N N 2 N N 3 N N 3 N N A PHE 7 A PHE 11 HELX_P A SER 11 A SER 15 5 1 5 A ALA 55 A ALA 73 HELX_P A CYS 58 A CYS 76 5 3 4 A ASP 125 A ASP 154 HELX_P A LEU 130 A LEU 162 1 6 9 A GLU 164 A GLU 201 HELX_P A ASP 170 A ASP 207 1 7 7 A LEU 234 A LEU 278 HELX_P A PHE 245 A PHE 289 1 9 12 disulf 2.026 A CYS 1 A SG CYS 5 1_555 A CYS 122 A SG CYS 151 1_555 disulf 2.026 A CYS 42 A SG CYS 60 1_555 A CYS 58 A SG CYS 76 1_555 disulf 2.025 A CYS 168 A SG CYS 205 1_555 A CYS 182 A SG CYS 219 1_555 disulf 2.029 A CYS 191 A SG CYS 233 1_555 A CYS 220 A SG CYS 263 1_555 covale 1.553 both B BBS 1 B S BBS 1 1_555 B ARG 2 B N ARG 2 1_555 covale 1.341 both B CPI 3 B C CPI 3 1_555 B TIH 4 B N TIH 4 1_555 covale 1.332 both B TIH 4 B C TIH 4 1_555 B DOA 5 B N DOA 5 1_555 covale 1.328 both B DOA 5 B C DOA 5 1_555 B ASP 6 B N ASP 6 1_555 HYDROLASE/HYDROLASE INHIBITOR thrombin inhibitors, serine protease, HYDROLASE-HYDROLASE INHIBITOR complex B ARG 2 B ARG 2 1 B CPI 3 B CPI 3 -0.86 THRB_HUMAN UNP 1 P00734 1EOJ PDB 2 1EOJ 332 620 1EOJ 1 245 P00734 D A 1 1 289 1 14 1EOJ 1 14 1EOJ B 2 1 14 1 GLU conflict GLY 1 1EOJ C A P00734 UNP 333 2 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 20 A SER 37 A ASP 21 A ASP 38 A GLN 156 A GLN 193 A PRO 161 A PRO 198 A LYS 135 A LYS 167 A GLY 140 A GLY 172 A PRO 198 A PRO 240 A LYS 202 A LYS 244 A TRP 207 A TRP 251 A TRP 215 A TRP 259 A GLY 226 A GLY 270 A HIS 230 A HIS 274 A MET 180 A MET 217 A ALA 183 A ALA 220 A GLN 30 A GLN 47 A ARG 35 A ARG 52 A GLU 39 A GLU 57 A LEU 46 A LEU 64 A TRP 51 A TRP 69 A THR 54 A THR 72 A ALA 104 A ALA 133 A LEU 108 A LEU 137 A LYS 81 A LYS 109 A ILE 90 A ILE 118 A LEU 64 A LEU 91 A ILE 68 A ILE 95 A GLN 30 A GLN 47 A ARG 35 A ARG 52 A LEU 60 A LEU 78 A TYR 60 A TYR 79 A A LYS 60 A LYS 84 A ASN 60 A ASN 85 F G BINDING SITE FOR CHAIN B OF THROMBIN INHIBITOR P798 Software 28 A GLN 38 A GLN 56 28 1_555 A GLU 39 A GLU 57 28 1_555 A LEU 40 A LEU 58 28 1_555 A LEU 41 A LEU 59 28 1_555 A HIS 57 A HIS 75 28 1_555 A TRP 60 A TRP 82 D 28 1_555 A LYS 60 A LYS 84 F 28 1_555 A ARG 73 A ARG 100 28 1_555 A THR 74 A THR 101 28 1_555 A ARG 75 A ARG 102 28 2_555 A TYR 76 A TYR 103 28 1_555 A ILE 82 A ILE 110 28 1_555 A GLU 97 A GLU 126 A 28 1_555 A LEU 99 A LEU 128 28 1_555 A ASP 189 A ASP 231 28 1_555 A ALA 190 A ALA 232 28 1_555 A GLU 192 A GLU 234 28 1_555 A SER 195 A SER 237 28 1_555 A SER 214 A SER 258 28 1_555 A TRP 215 A TRP 259 28 1_555 A GLY 216 A GLY 260 28 1_555 A GLY 219 A GLY 262 28 1_555 A HOH 272 C HOH 28 1_555 A HOH 282 C HOH 28 1_555 A HOH 374 C HOH 28 1_555 B HOH 47 D HOH 28 1_555 B HOH 49 D HOH 28 1_555 B HOH 89 D HOH 28 1_555 5 C 1 2 1