0.014494
0.000000
0.000000
0.000000
0.008514
0.000000
0.000000
0.000000
0.024903
0.00000
0.00000
0.00000
Waddling, C.A.
Plummer Jr., T.H.
Tarentino, A.L.
Van Roey, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
68.994
117.456
40.156
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
C
N
89
R
C
N
90
S
C
N
91
R
C
N
92
R
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
S
C
N
255
S
C
N
256
S
C
N
257
S
C
N
258
R
C
N
259
N
C
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
R
C
N
299
R
C
N
300
R
C
N
301
S
C
N
302
R
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
N
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
S
N
383
N
O
N
384
N
O
N
385
N
O
N
386
N
O
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
R
C
N
392
N
O
N
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
N
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
39
7878
7885
10.1021/bi0001731
10891067
Structural basis for the substrate specificity of endo-beta-N-acetylglucosaminidase F(3).
2000
10.2210/pdb1eom/pdb
pdb_00001eom
MAN B 2 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
31562.545
ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F3
3.2.1.96
1
man
polymer
1438.297
beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
96.063
SULFATE ION
6
syn
non-polymer
18.015
water
304
nat
water
no
no
ATALAGSNGVCIAYYITDGRNPTFKLKDIPDKVDMVILFGLKYWSLQDTTKLPGGTGMMGSFKSYKDLDTQIRSLQSRGI
KVLQNIDDDVSWQSSKPGGFASAAAYGDAIKSIVIDKWKLDGISLDIEHSGAKPNPIPTFPGYAATGYNGWYSGSMAATP
AFLNVISELTKYFGTTAPNNKQLQIASGIDVYAWNKIMENFRNNFNYIQLQSYGANVSRTQLMMNYATGTNKIPASKMVF
GAYAEGGTNQANDVEVAKWTPTQGAKGGMMIYTYNSNVSYANAVRDAVKN
ATALAGSNGVCIAYYITDGRNPTFKLKDIPDKVDMVILFGLKYWSLQDTTKLPGGTGMMGSFKSYKDLDTQIRSLQSRGI
KVLQNIDDDVSWQSSKPGGFASAAAYGDAIKSIVIDKWKLDGISLDIEHSGAKPNPIPTFPGYAATGYNGWYSGSMAATP
AFLNVISELTKYFGTTAPNNKQLQIASGIDVYAWNKIMENFRNNFNYIQLQSYGANVSRTQLMMNYATGTNKIPASKMVF
GAYAEGGTNQANDVEVAKWTPTQGAKGGMMIYTYNSNVSYANAVRDAVKN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Elizabethkingia
Escherichia
sample
238
Elizabethkingia meningoseptica
562
Escherichia coli
PLASMID
PMAL
1
2.58
52.26
VAPOR DIFFUSION, HANGING DROP
7.0
2.2 M ammonium sulphate, 4% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K
283
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
pdbx_validate_close_contact
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Structure summary
1
0
2000-07-27
1
1
2008-04-27
1
2
2011-07-13
2
0
2020-07-29
2
1
2024-02-07
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_seq_id
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
632
n
B
NAG
1
A
MAN
633
n
B
MAN
2
A
MAN
641
n
B
MAN
3
A
NAG
642
n
B
NAG
4
A
GAL
643
n
B
GAL
5
A
MAN
634
n
B
MAN
6
A
NAG
635
n
B
NAG
7
A
GAL
636
n
B
GAL
8
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
1EOK contains the same protein.
RCSB
Y
RCSB
2000-03-23
REL
REL
oligosaccharide
DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpa1-4DGlcpNAcb1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-2-1-3-2-1-3/a4-b1_b3-c1_b6-f1_c2-d1_d4-e1_f2-g1_g4-h1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}}}
2
PDB-CARE
LINUCS
C1
O4
MAN
NAG
2
1
2
O1
HO4
sing
C1
O3
MAN
MAN
3
2
2
O1
HO3
sing
C1
O2
NAG
MAN
4
3
2
O1
HO2
sing
C1
O4
GAL
NAG
5
4
2
O1
HO4
sing
C1
O6
MAN
MAN
6
2
2
O1
HO6
sing
C1
O2
NAG
MAN
7
6
2
O1
HO2
sing
C1
O4
GAL
NAG
8
7
2
O1
HO4
sing
n
n
n
n
n
n
n
n
SO4
SULFATE ION
HOH
water
SO4
700
3
SO4
SO4
700
A
SO4
701
3
SO4
SO4
701
A
SO4
702
3
SO4
SO4
702
A
SO4
703
3
SO4
SO4
703
A
SO4
704
3
SO4
SO4
704
A
SO4
705
3
SO4
SO4
705
A
WAT
300
4
HOH
HOH
300
A
WAT
301
4
HOH
HOH
301
A
WAT
302
4
HOH
HOH
302
A
WAT
303
4
HOH
HOH
303
A
WAT
304
4
HOH
HOH
304
A
WAT
305
4
HOH
HOH
305
A
WAT
306
4
HOH
HOH
306
A
WAT
307
4
HOH
HOH
307
A
WAT
308
4
HOH
HOH
308
A
WAT
309
4
HOH
HOH
309
A
WAT
310
4
HOH
HOH
310
A
WAT
311
4
HOH
HOH
311
A
WAT
312
4
HOH
HOH
312
A
WAT
313
4
HOH
HOH
313
A
WAT
314
4
HOH
HOH
314
A
WAT
315
4
HOH
HOH
315
A
WAT
316
4
HOH
HOH
316
A
WAT
317
4
HOH
HOH
317
A
WAT
318
4
HOH
HOH
318
A
WAT
319
4
HOH
HOH
319
A
WAT
320
4
HOH
HOH
320
A
WAT
321
4
HOH
HOH
321
A
WAT
322
4
HOH
HOH
322
A
WAT
323
4
HOH
HOH
323
A
WAT
324
4
HOH
HOH
324
A
WAT
325
4
HOH
HOH
325
A
WAT
326
4
HOH
HOH
326
A
WAT
327
4
HOH
HOH
327
A
WAT
328
4
HOH
HOH
328
A
WAT
329
4
HOH
HOH
329
A
WAT
330
4
HOH
HOH
330
A
WAT
331
4
HOH
HOH
331
A
WAT
332
4
HOH
HOH
332
A
WAT
333
4
HOH
HOH
333
A
WAT
334
4
HOH
HOH
334
A
WAT
335
4
HOH
HOH
335
A
WAT
336
4
HOH
HOH
336
A
WAT
337
4
HOH
HOH
337
A
WAT
338
4
HOH
HOH
338
A
WAT
339
4
HOH
HOH
339
A
WAT
340
4
HOH
HOH
340
A
WAT
341
4
HOH
HOH
341
A
WAT
342
4
HOH
HOH
342
A
WAT
343
4
HOH
HOH
343
A
WAT
344
4
HOH
HOH
344
A
WAT
345
4
HOH
HOH
345
A
WAT
346
4
HOH
HOH
346
A
WAT
347
4
HOH
HOH
347
A
WAT
348
4
HOH
HOH
348
A
WAT
349
4
HOH
HOH
349
A
WAT
350
4
HOH
HOH
350
A
WAT
351
4
HOH
HOH
351
A
WAT
352
4
HOH
HOH
352
A
WAT
353
4
HOH
HOH
353
A
WAT
354
4
HOH
HOH
354
A
WAT
355
4
HOH
HOH
355
A
WAT
356
4
HOH
HOH
356
A
WAT
357
4
HOH
HOH
357
A
WAT
358
4
HOH
HOH
358
A
WAT
359
4
HOH
HOH
359
A
WAT
360
4
HOH
HOH
360
A
WAT
361
4
HOH
HOH
361
A
WAT
362
4
HOH
HOH
362
A
WAT
363
4
HOH
HOH
363
A
WAT
364
4
HOH
HOH
364
A
WAT
365
4
HOH
HOH
365
A
WAT
366
4
HOH
HOH
366
A
WAT
367
4
HOH
HOH
367
A
WAT
368
4
HOH
HOH
368
A
WAT
369
4
HOH
HOH
369
A
WAT
370
4
HOH
HOH
370
A
WAT
371
4
HOH
HOH
371
A
WAT
372
4
HOH
HOH
372
A
WAT
373
4
HOH
HOH
373
A
WAT
374
4
HOH
HOH
374
A
WAT
375
4
HOH
HOH
375
A
WAT
376
4
HOH
HOH
376
A
WAT
377
4
HOH
HOH
377
A
WAT
378
4
HOH
HOH
378
A
WAT
379
4
HOH
HOH
379
A
WAT
380
4
HOH
HOH
380
A
WAT
381
4
HOH
HOH
381
A
WAT
382
4
HOH
HOH
382
A
WAT
383
4
HOH
HOH
383
A
WAT
384
4
HOH
HOH
384
A
WAT
385
4
HOH
HOH
385
A
WAT
386
4
HOH
HOH
386
A
WAT
387
4
HOH
HOH
387
A
WAT
388
4
HOH
HOH
388
A
WAT
389
4
HOH
HOH
389
A
WAT
390
4
HOH
HOH
390
A
WAT
391
4
HOH
HOH
391
A
WAT
392
4
HOH
HOH
392
A
WAT
393
4
HOH
HOH
393
A
WAT
394
4
HOH
HOH
394
A
WAT
395
4
HOH
HOH
395
A
WAT
396
4
HOH
HOH
396
A
WAT
397
4
HOH
HOH
397
A
WAT
398
4
HOH
HOH
398
A
WAT
399
4
HOH
HOH
399
A
WAT
400
4
HOH
HOH
400
A
WAT
401
4
HOH
HOH
401
A
WAT
402
4
HOH
HOH
402
A
WAT
403
4
HOH
HOH
403
A
WAT
404
4
HOH
HOH
404
A
WAT
405
4
HOH
HOH
405
A
WAT
406
4
HOH
HOH
406
A
WAT
407
4
HOH
HOH
407
A
WAT
408
4
HOH
HOH
408
A
WAT
409
4
HOH
HOH
409
A
WAT
410
4
HOH
HOH
410
A
WAT
411
4
HOH
HOH
411
A
WAT
412
4
HOH
HOH
412
A
WAT
413
4
HOH
HOH
413
A
WAT
414
4
HOH
HOH
414
A
WAT
415
4
HOH
HOH
415
A
WAT
416
4
HOH
HOH
416
A
WAT
417
4
HOH
HOH
417
A
WAT
418
4
HOH
HOH
418
A
WAT
419
4
HOH
HOH
419
A
WAT
420
4
HOH
HOH
420
A
WAT
421
4
HOH
HOH
421
A
WAT
422
4
HOH
HOH
422
A
WAT
423
4
HOH
HOH
423
A
WAT
424
4
HOH
HOH
424
A
WAT
425
4
HOH
HOH
425
A
WAT
426
4
HOH
HOH
426
A
WAT
427
4
HOH
HOH
427
A
WAT
428
4
HOH
HOH
428
A
WAT
429
4
HOH
HOH
429
A
WAT
430
4
HOH
HOH
430
A
WAT
431
4
HOH
HOH
431
A
WAT
432
4
HOH
HOH
432
A
WAT
433
4
HOH
HOH
433
A
WAT
434
4
HOH
HOH
434
A
WAT
435
4
HOH
HOH
435
A
WAT
436
4
HOH
HOH
436
A
WAT
437
4
HOH
HOH
437
A
WAT
438
4
HOH
HOH
438
A
WAT
439
4
HOH
HOH
439
A
WAT
440
4
HOH
HOH
440
A
WAT
441
4
HOH
HOH
441
A
WAT
442
4
HOH
HOH
442
A
WAT
443
4
HOH
HOH
443
A
WAT
444
4
HOH
HOH
444
A
WAT
445
4
HOH
HOH
445
A
WAT
446
4
HOH
HOH
446
A
WAT
447
4
HOH
HOH
447
A
WAT
448
4
HOH
HOH
448
A
WAT
449
4
HOH
HOH
449
A
WAT
450
4
HOH
HOH
450
A
WAT
451
4
HOH
HOH
451
A
WAT
452
4
HOH
HOH
452
A
WAT
453
4
HOH
HOH
453
A
WAT
454
4
HOH
HOH
454
A
WAT
455
4
HOH
HOH
455
A
WAT
456
4
HOH
HOH
456
A
WAT
457
4
HOH
HOH
457
A
WAT
458
4
HOH
HOH
458
A
WAT
459
4
HOH
HOH
459
A
WAT
460
4
HOH
HOH
460
A
WAT
461
4
HOH
HOH
461
A
WAT
462
4
HOH
HOH
462
A
WAT
463
4
HOH
HOH
463
A
WAT
464
4
HOH
HOH
464
A
WAT
465
4
HOH
HOH
465
A
WAT
466
4
HOH
HOH
466
A
WAT
467
4
HOH
HOH
467
A
WAT
468
4
HOH
HOH
468
A
WAT
469
4
HOH
HOH
469
A
WAT
470
4
HOH
HOH
470
A
WAT
471
4
HOH
HOH
471
A
WAT
472
4
HOH
HOH
472
A
WAT
473
4
HOH
HOH
473
A
WAT
474
4
HOH
HOH
474
A
WAT
475
4
HOH
HOH
475
A
WAT
476
4
HOH
HOH
476
A
WAT
477
4
HOH
HOH
477
A
WAT
478
4
HOH
HOH
478
A
WAT
479
4
HOH
HOH
479
A
WAT
480
4
HOH
HOH
480
A
WAT
481
4
HOH
HOH
481
A
WAT
482
4
HOH
HOH
482
A
WAT
483
4
HOH
HOH
483
A
WAT
484
4
HOH
HOH
484
A
WAT
485
4
HOH
HOH
485
A
WAT
486
4
HOH
HOH
486
A
WAT
487
4
HOH
HOH
487
A
WAT
488
4
HOH
HOH
488
A
WAT
489
4
HOH
HOH
489
A
WAT
490
4
HOH
HOH
490
A
WAT
491
4
HOH
HOH
491
A
WAT
492
4
HOH
HOH
492
A
WAT
493
4
HOH
HOH
493
A
WAT
494
4
HOH
HOH
494
A
WAT
495
4
HOH
HOH
495
A
WAT
496
4
HOH
HOH
496
A
WAT
497
4
HOH
HOH
497
A
WAT
498
4
HOH
HOH
498
A
WAT
499
4
HOH
HOH
499
A
WAT
500
4
HOH
HOH
500
A
WAT
501
4
HOH
HOH
501
A
WAT
502
4
HOH
HOH
502
A
WAT
503
4
HOH
HOH
503
A
WAT
504
4
HOH
HOH
504
A
WAT
505
4
HOH
HOH
505
A
WAT
506
4
HOH
HOH
506
A
WAT
507
4
HOH
HOH
507
A
WAT
508
4
HOH
HOH
508
A
WAT
509
4
HOH
HOH
509
A
WAT
510
4
HOH
HOH
510
A
WAT
511
4
HOH
HOH
511
A
WAT
512
4
HOH
HOH
512
A
WAT
513
4
HOH
HOH
513
A
WAT
514
4
HOH
HOH
514
A
WAT
515
4
HOH
HOH
515
A
WAT
516
4
HOH
HOH
516
A
WAT
517
4
HOH
HOH
517
A
WAT
518
4
HOH
HOH
518
A
WAT
519
4
HOH
HOH
519
A
WAT
520
4
HOH
HOH
520
A
WAT
521
4
HOH
HOH
521
A
WAT
522
4
HOH
HOH
522
A
WAT
523
4
HOH
HOH
523
A
WAT
524
4
HOH
HOH
524
A
WAT
525
4
HOH
HOH
525
A
WAT
526
4
HOH
HOH
526
A
WAT
527
4
HOH
HOH
527
A
WAT
528
4
HOH
HOH
528
A
WAT
529
4
HOH
HOH
529
A
WAT
530
4
HOH
HOH
530
A
WAT
531
4
HOH
HOH
531
A
WAT
532
4
HOH
HOH
532
A
WAT
533
4
HOH
HOH
533
A
WAT
534
4
HOH
HOH
534
A
WAT
535
4
HOH
HOH
535
A
WAT
536
4
HOH
HOH
536
A
WAT
537
4
HOH
HOH
537
A
WAT
538
4
HOH
HOH
538
A
WAT
539
4
HOH
HOH
539
A
WAT
540
4
HOH
HOH
540
A
WAT
542
4
HOH
HOH
542
A
WAT
543
4
HOH
HOH
543
A
WAT
544
4
HOH
HOH
544
A
WAT
545
4
HOH
HOH
545
A
WAT
546
4
HOH
HOH
546
A
WAT
547
4
HOH
HOH
547
A
WAT
548
4
HOH
HOH
548
A
WAT
549
4
HOH
HOH
549
A
WAT
550
4
HOH
HOH
550
A
WAT
551
4
HOH
HOH
551
A
WAT
552
4
HOH
HOH
552
A
WAT
553
4
HOH
HOH
553
A
WAT
554
4
HOH
HOH
554
A
WAT
555
4
HOH
HOH
555
A
WAT
556
4
HOH
HOH
556
A
WAT
557
4
HOH
HOH
557
A
WAT
558
4
HOH
HOH
558
A
WAT
559
4
HOH
HOH
559
A
WAT
560
4
HOH
HOH
560
A
WAT
561
4
HOH
HOH
561
A
WAT
562
4
HOH
HOH
562
A
WAT
563
4
HOH
HOH
563
A
WAT
564
4
HOH
HOH
564
A
WAT
565
4
HOH
HOH
565
A
WAT
566
4
HOH
HOH
566
A
WAT
567
4
HOH
HOH
567
A
WAT
568
4
HOH
HOH
568
A
WAT
569
4
HOH
HOH
569
A
WAT
570
4
HOH
HOH
570
A
WAT
571
4
HOH
HOH
571
A
WAT
572
4
HOH
HOH
572
A
WAT
573
4
HOH
HOH
573
A
WAT
575
4
HOH
HOH
575
A
WAT
576
4
HOH
HOH
576
A
WAT
577
4
HOH
HOH
577
A
WAT
578
4
HOH
HOH
578
A
WAT
579
4
HOH
HOH
579
A
WAT
580
4
HOH
HOH
580
A
WAT
581
4
HOH
HOH
581
A
WAT
582
4
HOH
HOH
582
A
WAT
583
4
HOH
HOH
583
A
WAT
584
4
HOH
HOH
584
A
WAT
585
4
HOH
HOH
585
A
WAT
586
4
HOH
HOH
586
A
WAT
587
4
HOH
HOH
587
A
WAT
588
4
HOH
HOH
588
A
WAT
589
4
HOH
HOH
589
A
WAT
590
4
HOH
HOH
590
A
WAT
591
4
HOH
HOH
591
A
WAT
592
4
HOH
HOH
592
A
WAT
593
4
HOH
HOH
593
A
WAT
594
4
HOH
HOH
594
A
WAT
595
4
HOH
HOH
595
A
WAT
596
4
HOH
HOH
596
A
WAT
597
4
HOH
HOH
597
A
WAT
598
4
HOH
HOH
598
A
WAT
599
4
HOH
HOH
599
A
WAT
600
4
HOH
HOH
600
A
WAT
602
4
HOH
HOH
602
A
WAT
603
4
HOH
HOH
603
A
WAT
604
4
HOH
HOH
604
A
WAT
607
4
HOH
HOH
607
A
WAT
608
4
HOH
HOH
608
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
ASN
8
n
8
ASN
8
A
GLY
9
n
9
GLY
9
A
VAL
10
n
10
VAL
10
A
CYS
11
n
11
CYS
11
A
ILE
12
n
12
ILE
12
A
ALA
13
n
13
ALA
13
A
TYR
14
n
14
TYR
14
A
TYR
15
n
15
TYR
15
A
ILE
16
n
16
ILE
16
A
THR
17
n
17
THR
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
ARG
20
n
20
ARG
20
A
ASN
21
n
21
ASN
21
A
PRO
22
n
22
PRO
22
A
THR
23
n
23
THR
23
A
PHE
24
n
24
PHE
24
A
LYS
25
n
25
LYS
25
A
LEU
26
n
26
LEU
26
A
LYS
27
n
27
LYS
27
A
ASP
28
n
28
ASP
28
A
ILE
29
n
29
ILE
29
A
PRO
30
n
30
PRO
30
A
ASP
31
n
31
ASP
31
A
LYS
32
n
32
LYS
32
A
VAL
33
n
33
VAL
33
A
ASP
34
n
34
ASP
34
A
MET
35
n
35
MET
35
A
VAL
36
n
36
VAL
36
A
ILE
37
n
37
ILE
37
A
LEU
38
n
38
LEU
38
A
PHE
39
n
39
PHE
39
A
GLY
40
n
40
GLY
40
A
LEU
41
n
41
LEU
41
A
LYS
42
n
42
LYS
42
A
TYR
43
n
43
TYR
43
A
TRP
44
n
44
TRP
44
A
SER
45
n
45
SER
45
A
LEU
46
n
46
LEU
46
A
GLN
47
n
47
GLN
47
A
ASP
48
n
48
ASP
48
A
THR
49
n
49
THR
49
A
THR
50
n
50
THR
50
A
LYS
51
n
51
LYS
51
A
LEU
52
n
52
LEU
52
A
PRO
53
n
53
PRO
53
A
GLY
54
n
54
GLY
54
A
GLY
55
n
55
GLY
55
A
THR
56
n
56
THR
56
A
GLY
57
n
57
GLY
57
A
MET
58
n
58
MET
58
A
MET
59
n
59
MET
59
A
GLY
60
n
60
GLY
60
A
SER
61
n
61
SER
61
A
PHE
62
n
62
PHE
62
A
LYS
63
n
63
LYS
63
A
SER
64
n
64
SER
64
A
TYR
65
n
65
TYR
65
A
LYS
66
n
66
LYS
66
A
ASP
67
n
67
ASP
67
A
LEU
68
n
68
LEU
68
A
ASP
69
n
69
ASP
69
A
THR
70
n
70
THR
70
A
GLN
71
n
71
GLN
71
A
ILE
72
n
72
ILE
72
A
ARG
73
n
73
ARG
73
A
SER
74
n
74
SER
74
A
LEU
75
n
75
LEU
75
A
GLN
76
n
76
GLN
76
A
SER
77
n
77
SER
77
A
ARG
78
n
78
ARG
78
A
GLY
79
n
79
GLY
79
A
ILE
80
n
80
ILE
80
A
LYS
81
n
81
LYS
81
A
VAL
82
n
82
VAL
82
A
LEU
83
n
83
LEU
83
A
GLN
84
n
84
GLN
84
A
ASN
85
n
85
ASN
85
A
ILE
86
n
86
ILE
86
A
ASP
87
n
87
ASP
87
A
ASP
88
n
88
ASP
88
A
ASP
89
n
89
ASP
89
A
VAL
90
n
90
VAL
90
A
SER
91
n
91
SER
91
A
TRP
92
n
92
TRP
92
A
GLN
93
n
93
GLN
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
LYS
96
n
96
LYS
96
A
PRO
97
n
97
PRO
97
A
GLY
98
n
98
GLY
98
A
GLY
99
n
99
GLY
99
A
PHE
100
n
100
PHE
100
A
ALA
101
n
101
ALA
101
A
SER
102
n
102
SER
102
A
ALA
103
n
103
ALA
103
A
ALA
104
n
104
ALA
104
A
ALA
105
n
105
ALA
105
A
TYR
106
n
106
TYR
106
A
GLY
107
n
107
GLY
107
A
ASP
108
n
108
ASP
108
A
ALA
109
n
109
ALA
109
A
ILE
110
n
110
ILE
110
A
LYS
111
n
111
LYS
111
A
SER
112
n
112
SER
112
A
ILE
113
n
113
ILE
113
A
VAL
114
n
114
VAL
114
A
ILE
115
n
115
ILE
115
A
ASP
116
n
116
ASP
116
A
LYS
117
n
117
LYS
117
A
TRP
118
n
118
TRP
118
A
LYS
119
n
119
LYS
119
A
LEU
120
n
120
LEU
120
A
ASP
121
n
121
ASP
121
A
GLY
122
n
122
GLY
122
A
ILE
123
n
123
ILE
123
A
SER
124
n
124
SER
124
A
LEU
125
n
125
LEU
125
A
ASP
126
n
126
ASP
126
A
ILE
127
n
127
ILE
127
A
GLU
128
n
128
GLU
128
A
HIS
129
n
129
HIS
129
A
SER
130
n
130
SER
130
A
GLY
131
n
131
GLY
131
A
ALA
132
n
132
ALA
132
A
LYS
133
n
133
LYS
133
A
PRO
134
n
134
PRO
134
A
ASN
135
n
135
ASN
135
A
PRO
136
n
136
PRO
136
A
ILE
137
n
137
ILE
137
A
PRO
138
n
138
PRO
138
A
THR
139
n
139
THR
139
A
PHE
140
n
140
PHE
140
A
PRO
141
n
141
PRO
141
A
GLY
142
n
142
GLY
142
A
TYR
143
n
143
TYR
143
A
ALA
144
n
144
ALA
144
A
ALA
145
n
145
ALA
145
A
THR
146
n
146
THR
146
A
GLY
147
n
147
GLY
147
A
TYR
148
n
148
TYR
148
A
ASN
149
n
149
ASN
149
A
GLY
150
n
150
GLY
150
A
TRP
151
n
151
TRP
151
A
TYR
152
n
152
TYR
152
A
SER
153
n
153
SER
153
A
GLY
154
n
154
GLY
154
A
SER
155
n
155
SER
155
A
MET
156
n
156
MET
156
A
ALA
157
n
157
ALA
157
A
ALA
158
n
158
ALA
158
A
THR
159
n
159
THR
159
A
PRO
160
n
160
PRO
160
A
ALA
161
n
161
ALA
161
A
PHE
162
n
162
PHE
162
A
LEU
163
n
163
LEU
163
A
ASN
164
n
164
ASN
164
A
VAL
165
n
165
VAL
165
A
ILE
166
n
166
ILE
166
A
SER
167
n
167
SER
167
A
GLU
168
n
168
GLU
168
A
LEU
169
n
169
LEU
169
A
THR
170
n
170
THR
170
A
LYS
171
n
171
LYS
171
A
TYR
172
n
172
TYR
172
A
PHE
173
n
173
PHE
173
A
GLY
174
n
174
GLY
174
A
THR
175
n
175
THR
175
A
THR
176
n
176
THR
176
A
ALA
177
n
177
ALA
177
A
PRO
178
n
178
PRO
178
A
ASN
179
n
179
ASN
179
A
ASN
180
n
180
ASN
180
A
LYS
181
n
181
LYS
181
A
GLN
182
n
182
GLN
182
A
LEU
183
n
183
LEU
183
A
GLN
184
n
184
GLN
184
A
ILE
185
n
185
ILE
185
A
ALA
186
n
186
ALA
186
A
SER
187
n
187
SER
187
A
GLY
188
n
188
GLY
188
A
ILE
189
n
189
ILE
189
A
ASP
190
n
190
ASP
190
A
VAL
191
n
191
VAL
191
A
TYR
192
n
192
TYR
192
A
ALA
193
n
193
ALA
193
A
TRP
194
n
194
TRP
194
A
ASN
195
n
195
ASN
195
A
LYS
196
n
196
LYS
196
A
ILE
197
n
197
ILE
197
A
MET
198
n
198
MET
198
A
GLU
199
n
199
GLU
199
A
ASN
200
n
200
ASN
200
A
PHE
201
n
201
PHE
201
A
ARG
202
n
202
ARG
202
A
ASN
203
n
203
ASN
203
A
ASN
204
n
204
ASN
204
A
PHE
205
n
205
PHE
205
A
ASN
206
n
206
ASN
206
A
TYR
207
n
207
TYR
207
A
ILE
208
n
208
ILE
208
A
GLN
209
n
209
GLN
209
A
LEU
210
n
210
LEU
210
A
GLN
211
n
211
GLN
211
A
SER
212
n
212
SER
212
A
TYR
213
n
213
TYR
213
A
GLY
214
n
214
GLY
214
A
ALA
215
n
215
ALA
215
A
ASN
216
n
216
ASN
216
A
VAL
217
n
217
VAL
217
A
SER
218
n
218
SER
218
A
ARG
219
n
219
ARG
219
A
THR
220
n
220
THR
220
A
GLN
221
n
221
GLN
221
A
LEU
222
n
222
LEU
222
A
MET
223
n
223
MET
223
A
MET
224
n
224
MET
224
A
ASN
225
n
225
ASN
225
A
TYR
226
n
226
TYR
226
A
ALA
227
n
227
ALA
227
A
THR
228
n
228
THR
228
A
GLY
229
n
229
GLY
229
A
THR
230
n
230
THR
230
A
ASN
231
n
231
ASN
231
A
LYS
232
n
232
LYS
232
A
ILE
233
n
233
ILE
233
A
PRO
234
n
234
PRO
234
A
ALA
235
n
235
ALA
235
A
SER
236
n
236
SER
236
A
LYS
237
n
237
LYS
237
A
MET
238
n
238
MET
238
A
VAL
239
n
239
VAL
239
A
PHE
240
n
240
PHE
240
A
GLY
241
n
241
GLY
241
A
ALA
242
n
242
ALA
242
A
TYR
243
n
243
TYR
243
A
ALA
244
n
244
ALA
244
A
GLU
245
n
245
GLU
245
A
GLY
246
n
246
GLY
246
A
GLY
247
n
247
GLY
247
A
THR
248
n
248
THR
248
A
ASN
249
n
249
ASN
249
A
GLN
250
n
250
GLN
250
A
ALA
251
n
251
ALA
251
A
ASN
252
n
252
ASN
252
A
ASP
253
n
253
ASP
253
A
VAL
254
n
254
VAL
254
A
GLU
255
n
255
GLU
255
A
VAL
256
n
256
VAL
256
A
ALA
257
n
257
ALA
257
A
LYS
258
n
258
LYS
258
A
TRP
259
n
259
TRP
259
A
THR
260
n
260
THR
260
A
PRO
261
n
261
PRO
261
A
THR
262
n
262
THR
262
A
GLN
263
n
263
GLN
263
A
GLY
264
n
264
GLY
264
A
ALA
265
n
265
ALA
265
A
LYS
266
n
266
LYS
266
A
GLY
267
n
267
GLY
267
A
GLY
268
n
268
GLY
268
A
MET
269
n
269
MET
269
A
MET
270
n
270
MET
270
A
ILE
271
n
271
ILE
271
A
TYR
272
n
272
TYR
272
A
THR
273
n
273
THR
273
A
TYR
274
n
274
TYR
274
A
ASN
275
n
275
ASN
275
A
SER
276
n
276
SER
276
A
ASN
277
n
277
ASN
277
A
VAL
278
n
278
VAL
278
A
SER
279
n
279
SER
279
A
TYR
280
n
280
TYR
280
A
ALA
281
n
281
ALA
281
A
ASN
282
n
282
ASN
282
A
ALA
283
n
283
ALA
283
A
VAL
284
n
284
VAL
284
A
ARG
285
n
285
ARG
285
A
ASP
286
n
286
ASP
286
A
ALA
287
n
287
ALA
287
A
VAL
288
n
288
VAL
288
A
LYS
289
n
289
LYS
289
A
ASN
290
n
290
ASN
290
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
13
A
N
ALA
13
A
O
MET
35
A
O
MET
35
A
N
VAL
36
A
N
VAL
36
A
O
LYS
81
A
O
LYS
81
A
N
GLN
84
A
N
GLN
84
A
O
GLY
122
A
O
GLY
122
A
N
ILE
123
A
N
ILE
123
A
O
GLN
182
A
O
GLN
182
A
N
ILE
185
A
N
ILE
185
A
O
TYR
207
A
O
TYR
207
A
N
LEU
210
A
N
LEU
210
A
O
VAL
239
A
O
VAL
239
A
N
PHE
240
A
N
PHE
240
A
O
GLY
268
A
O
GLY
268
A
N
MET
269
A
N
MET
269
A
O
VAL
10
A
O
VAL
10
1
A
ALA
1
A
ALA
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
ALA
3
A
ALA
3
1
Y
1
A
LEU
4
A
LEU
4
1
Y
1
A
ALA
5
A
ALA
5
1
Y
1
A
GLY
6
A
GLY
6
1
Y
1
A
SER
7
A
SER
7
1
Y
1
B
C1
MAN
2
WRONG HAND
1
B
A
O4
O
GAL
HOH
5
542
2.13
1
A
ILE
115
-92.76
-66.83
1
A
GLU
128
-174.13
0.46
1
A
SER
155
-102.09
-167.32
1
A
ASN
180
35.91
64.72
1
A
SER
187
-153.87
-152.93
1
A
ASN
277
-165.38
93.75
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
ION.PARAM
ION.TOP
CARBOHYDRATE.PARAM
CARBOHYDRATE.TOP
CIS_PEPTIDE.PARAM
20.6
0.96
0.00
0.00
-0.18
0.00
-0.78
0.2150000
0.005
0.1610000
0.1610000
2.10
19.96
1903
19374
9.8
98.2
RANDOM
1813612.46
0.00
1
RESTRAINED
THROUGHOUT
0.0
Engh & Huber
FLAT MODEL
70.19
0.410
0.25
0.18
20.00
0.17
0.06
2.10
19.96
304
2613
128
0
2181
0.013
1.7
23.0
1.10
1.31
1.50
1.79
2.00
2.15
2.00
2.83
2.50
0.2350000
0.013
0.1720000
2.23
334
2778
6
10.7
96.7
20.4
2.1
20.
1EOM
0.
0.
0.0560000
1
5.5
98.2
0.2800000
2.1
2.2
1
94.
phasing
PHASES
refinement
CNS
0.9
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF THE COMPLEX OF ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F3 WITH A BIANTENNARY COMPLEX OCTASACCHARIDE
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
LYS
25
A
LYS
25
HELX_P
A
ILE
29
A
ILE
29
5
1
5
A
LYS
42
A
LYS
42
HELX_P
A
ASP
48
A
ASP
48
1
2
7
A
THR
56
A
THR
56
HELX_P
A
GLY
60
A
GLY
60
5
3
5
A
SER
64
A
SER
64
HELX_P
A
SER
77
A
SER
77
1
4
14
A
ASP
89
A
ASP
89
HELX_P
A
SER
94
A
SER
94
5
5
6
A
LYS
96
A
LYS
96
HELX_P
A
PHE
100
A
PHE
100
5
6
5
A
SER
102
A
SER
102
HELX_P
A
ILE
115
A
ILE
115
1
7
14
A
GLY
142
A
GLY
142
HELX_P
A
GLY
147
A
GLY
147
1
8
6
A
THR
159
A
THR
159
HELX_P
A
THR
170
A
THR
170
1
9
12
A
ALA
193
A
ALA
193
HELX_P
A
ARG
202
A
ARG
202
1
10
10
A
ASN
216
A
ASN
216
HELX_P
A
THR
230
A
THR
230
1
11
15
A
PRO
234
A
PRO
234
HELX_P
A
SER
236
A
SER
236
5
12
3
A
ASN
249
A
ASN
249
HELX_P
A
TRP
259
A
TRP
259
1
13
11
A
THR
273
A
THR
273
HELX_P
A
SER
276
A
SER
276
5
14
4
A
ASN
277
A
ASN
277
HELX_P
A
ASN
290
A
ASN
290
1
15
14
covale
1.391
both
B
NAG
1
B
O4
NAG
1_555
B
MAN
2
B
C1
MAN
1_555
covale
1.392
both
B
MAN
2
B
O3
MAN
1_555
B
MAN
3
B
C1
MAN
1_555
covale
1.386
both
B
MAN
2
B
O6
MAN
1_555
B
MAN
6
B
C1
MAN
1_555
covale
1.377
both
B
MAN
3
B
O2
MAN
1_555
B
NAG
4
B
C1
NAG
1_555
covale
1.387
both
B
NAG
4
B
O4
NAG
1_555
B
GAL
5
B
C1
GAL
1_555
covale
1.375
both
B
MAN
6
B
O2
MAN
1_555
B
NAG
7
B
C1
NAG
1_555
covale
1.388
both
B
NAG
7
B
O4
NAG
1_555
B
GAL
8
B
C1
GAL
1_555
HYDROLASE
(alpha/beta)-barrel, HYDROLASE
A
ASN
135
A
ASN
135
1
A
PRO
136
A
PRO
136
0.88
A
TYR
272
A
TYR
272
1
A
THR
273
A
THR
273
-3.61
EBA3_FLAME
UNP
1
P36913
40
329
1EOM
1
290
P36913
A
1
1
290
9
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
VAL
10
A
VAL
10
A
ILE
16
A
ILE
16
A
MET
35
A
MET
35
A
PHE
39
A
PHE
39
A
LYS
81
A
LYS
81
A
ASP
87
A
ASP
87
A
GLY
122
A
GLY
122
A
ASP
126
A
ASP
126
A
GLN
182
A
GLN
182
A
SER
187
A
SER
187
A
TYR
207
A
TYR
207
A
LEU
210
A
LEU
210
A
MET
238
A
MET
238
A
ALA
242
A
ALA
242
A
GLY
268
A
GLY
268
A
ILE
271
A
ILE
271
A
VAL
10
A
VAL
10
A
ILE
16
A
ILE
16
19
P 21 21 21