0.014672 0.000000 0.001858 0.000000 0.018696 0.000000 0.000000 0.000000 0.019587 0.00000 0.00000 0.00000 Christendat, D. Saridakis, V. Bochkarev, A. Pai, E.F. Arrowsmith, C. Edwards, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 97.22 90.00 68.156 53.486 51.462 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C10 H16 N2 O11 P2 402.188 THYMIDINE-5'-DIPHOSPHATE non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 S P N 349 N O N 350 N O N 351 N O N 352 N P N 353 N O N 354 N O N 355 N O N 356 N O N 357 N C N 358 R C N 359 N O N 360 S C N 361 N O N 362 N C N 363 R C Y 364 N N Y 365 N C N 366 N O Y 367 N N Y 368 N C N 369 N O Y 370 N C N 371 N C Y 372 N C N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C N 400 N O N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N C N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N sing Y 363 N sing N 364 N doub Y 365 N sing Y 366 N sing N 367 N sing N 368 N doub Y 369 N sing N 370 N sing Y 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing Y 387 N doub Y 388 N sing Y 389 N sing N 390 N sing Y 391 N doub N 392 N sing Y 393 N doub N 394 N sing Y 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 275 24608 24612 10.1074/jbc.C000238200 10827167 Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP. 2000 10.2210/pdb1epz/pdb pdb_00001epz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2000-03-28 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 21702.332 DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE 5.1.3.13 1 man polymer 402.188 THYMIDINE-5'-DIPHOSPHATE 1 syn non-polymer 18.015 water 119 nat water DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE no no MAEFRFIKTSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRG EIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPL EMVDDLIISEKDRNWKPLRENPVYL MAEFRFIKTSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRG EIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPL EMVDDLIISEKDRNWKPLRENPVYL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanothermobacter Escherichia sample 145262 Methanothermobacter thermautotrophicus 562 Escherichia coli PET15B 1 2.14 42.60 VAPOR DIFFUSION, HANGING DROP 4.6 10% polyethylene glycol 4K, 0.1 M Sodium Acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 20K 293.0 exptl_crystal_grow chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Derived calculations Version format compliance Experimental preparation Data collection Database references Derived calculations 1 0 2000-12-13 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-31 1 4 2024-02-07 _exptl_crystal_grow.temp _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1EPO is the apo-form of this enzyme. RCSB Y RCSB 2000-03-30 REL TYD THYMIDINE-5'-DIPHOSPHATE HOH water TYD 2187 2 TYD TYD 2187 A HOH 1001 3 HOH HOH 1001 A HOH 1002 3 HOH HOH 1002 A HOH 1003 3 HOH HOH 1003 A HOH 1004 3 HOH HOH 1004 A HOH 1005 3 HOH HOH 1005 A HOH 1006 3 HOH HOH 1006 A HOH 1007 3 HOH HOH 1007 A HOH 1008 3 HOH HOH 1008 A HOH 1009 3 HOH HOH 1009 A HOH 1010 3 HOH HOH 1010 A HOH 1011 3 HOH HOH 1011 A HOH 1012 3 HOH HOH 1012 A HOH 1013 3 HOH HOH 1013 A HOH 1014 3 HOH HOH 1014 A HOH 1015 3 HOH HOH 1015 A HOH 1016 3 HOH HOH 1016 A HOH 1017 3 HOH HOH 1017 A HOH 1018 3 HOH HOH 1018 A HOH 1019 3 HOH HOH 1019 A HOH 1020 3 HOH HOH 1020 A HOH 1021 3 HOH HOH 1021 A HOH 1022 3 HOH HOH 1022 A HOH 1023 3 HOH HOH 1023 A HOH 1024 3 HOH HOH 1024 A HOH 1025 3 HOH HOH 1025 A HOH 1026 3 HOH HOH 1026 A HOH 1027 3 HOH HOH 1027 A HOH 1028 3 HOH HOH 1028 A HOH 1029 3 HOH HOH 1029 A HOH 1030 3 HOH HOH 1030 A HOH 1031 3 HOH HOH 1031 A HOH 1032 3 HOH HOH 1032 A HOH 1033 3 HOH HOH 1033 A HOH 1034 3 HOH HOH 1034 A HOH 1035 3 HOH HOH 1035 A HOH 1036 3 HOH HOH 1036 A HOH 1037 3 HOH HOH 1037 A HOH 1038 3 HOH HOH 1038 A HOH 1039 3 HOH HOH 1039 A HOH 1040 3 HOH HOH 1040 A HOH 1041 3 HOH HOH 1041 A HOH 1042 3 HOH HOH 1042 A HOH 1043 3 HOH HOH 1043 A HOH 1044 3 HOH HOH 1044 A HOH 1045 3 HOH HOH 1045 A HOH 1046 3 HOH HOH 1046 A HOH 1047 3 HOH HOH 1047 A HOH 1048 3 HOH HOH 1048 A HOH 1049 3 HOH HOH 1049 A HOH 1050 3 HOH HOH 1050 A HOH 1051 3 HOH HOH 1051 A HOH 1052 3 HOH HOH 1052 A HOH 1053 3 HOH HOH 1053 A HOH 1054 3 HOH HOH 1054 A HOH 1055 3 HOH HOH 1055 A HOH 1056 3 HOH HOH 1056 A HOH 1057 3 HOH HOH 1057 A HOH 1058 3 HOH HOH 1058 A HOH 1059 3 HOH HOH 1059 A HOH 1060 3 HOH HOH 1060 A HOH 1061 3 HOH HOH 1061 A HOH 1062 3 HOH HOH 1062 A HOH 1063 3 HOH HOH 1063 A HOH 1064 3 HOH HOH 1064 A HOH 1065 3 HOH HOH 1065 A HOH 1066 3 HOH HOH 1066 A HOH 1067 3 HOH HOH 1067 A HOH 1068 3 HOH HOH 1068 A HOH 1069 3 HOH HOH 1069 A HOH 1070 3 HOH HOH 1070 A HOH 1071 3 HOH HOH 1071 A HOH 1072 3 HOH HOH 1072 A HOH 1073 3 HOH HOH 1073 A HOH 1074 3 HOH HOH 1074 A HOH 1075 3 HOH HOH 1075 A HOH 1076 3 HOH HOH 1076 A HOH 1077 3 HOH HOH 1077 A HOH 1078 3 HOH HOH 1078 A HOH 1079 3 HOH HOH 1079 A HOH 1080 3 HOH HOH 1080 A HOH 1081 3 HOH HOH 1081 A HOH 1082 3 HOH HOH 1082 A HOH 1083 3 HOH HOH 1083 A HOH 1084 3 HOH HOH 1084 A HOH 1085 3 HOH HOH 1085 A HOH 1086 3 HOH HOH 1086 A HOH 1087 3 HOH HOH 1087 A HOH 1088 3 HOH HOH 1088 A HOH 1089 3 HOH HOH 1089 A HOH 1090 3 HOH HOH 1090 A HOH 1091 3 HOH HOH 1091 A HOH 1092 3 HOH HOH 1092 A HOH 1093 3 HOH HOH 1093 A HOH 1094 3 HOH HOH 1094 A HOH 1095 3 HOH HOH 1095 A HOH 1096 3 HOH HOH 1096 A HOH 1097 3 HOH HOH 1097 A HOH 1098 3 HOH HOH 1098 A HOH 1099 3 HOH HOH 1099 A HOH 1100 3 HOH HOH 1100 A HOH 1101 3 HOH HOH 1101 A HOH 1102 3 HOH HOH 1102 A HOH 1103 3 HOH HOH 1103 A HOH 1104 3 HOH HOH 1104 A HOH 1105 3 HOH HOH 1105 A HOH 1106 3 HOH HOH 1106 A HOH 1107 3 HOH HOH 1107 A HOH 1108 3 HOH HOH 1108 A HOH 1109 3 HOH HOH 1109 A HOH 1110 3 HOH HOH 1110 A HOH 1111 3 HOH HOH 1111 A HOH 1112 3 HOH HOH 1112 A HOH 1113 3 HOH HOH 1113 A HOH 1114 3 HOH HOH 1114 A HOH 1115 3 HOH HOH 1115 A HOH 1116 3 HOH HOH 1116 A HOH 1117 3 HOH HOH 1117 A HOH 1118 3 HOH HOH 1118 A HOH 1119 3 HOH HOH 1119 A n 1 1 A n 2 2 A GLU 3 n 3 GLU 3 A PHE 4 n 4 PHE 4 A ARG 5 n 5 ARG 5 A PHE 6 n 6 PHE 6 A ILE 7 n 7 ILE 7 A LYS 8 n 8 LYS 8 A THR 9 n 9 THR 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A ASP 12 n 12 ASP 12 A GLY 13 n 13 GLY 13 A ALA 14 n 14 ALA 14 A ILE 15 n 15 ILE 15 A ILE 16 n 16 ILE 16 A ILE 17 n 17 ILE 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A GLU 20 n 20 GLU 20 A VAL 21 n 21 VAL 21 A TYR 22 n 22 TYR 22 A THR 23 n 23 THR 23 A ASP 24 n 24 ASP 24 A GLU 25 n 25 GLU 25 A ARG 26 n 26 ARG 26 A GLY 27 n 27 GLY 27 A TYR 28 n 28 TYR 28 A PHE 29 n 29 PHE 29 A MET 30 n 30 MET 30 A GLU 31 n 31 GLU 31 A THR 32 n 32 THR 32 A PHE 33 n 33 PHE 33 A ASN 34 n 34 ASN 34 A GLU 35 n 35 GLU 35 A ALA 36 n 36 ALA 36 A ILE 37 n 37 ILE 37 A PHE 38 n 38 PHE 38 A GLN 39 n 39 GLN 39 A GLU 40 n 40 GLU 40 A ASN 41 n 41 ASN 41 A GLY 42 n 42 GLY 42 A LEU 43 n 43 LEU 43 A GLU 44 n 44 GLU 44 A VAL 45 n 45 VAL 45 A ARG 46 n 46 ARG 46 A PHE 47 n 47 PHE 47 A VAL 48 n 48 VAL 48 A GLN 49 n 49 GLN 49 A ASP 50 n 50 ASP 50 A ASN 51 n 51 ASN 51 A GLU 52 n 52 GLU 52 A SER 53 n 53 SER 53 A MET 54 n 54 MET 54 A SER 55 n 55 SER 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLY 58 n 58 GLY 58 A VAL 59 n 59 VAL 59 A LEU 60 n 60 LEU 60 A ARG 61 n 61 ARG 61 A GLY 62 n 62 GLY 62 A LEU 63 n 63 LEU 63 A HIS 64 n 64 HIS 64 A PHE 65 n 65 PHE 65 A GLN 66 n 66 GLN 66 A ARG 67 n 67 ARG 67 A GLU 68 n 68 GLU 68 A LYS 69 n 69 LYS 69 A PRO 70 n 70 PRO 70 A GLN 71 n 71 GLN 71 A GLY 72 n 72 GLY 72 A LYS 73 n 73 LYS 73 A LEU 74 n 74 LEU 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A VAL 77 n 77 VAL 77 A ILE 78 n 78 ILE 78 A ARG 79 n 79 ARG 79 A GLY 80 n 80 GLY 80 A GLU 81 n 81 GLU 81 A ILE 82 n 82 ILE 82 A PHE 83 n 83 PHE 83 A ASP 84 n 84 ASP 84 A VAL 85 n 85 VAL 85 A ALA 86 n 86 ALA 86 A VAL 87 n 87 VAL 87 A ASP 88 n 88 ASP 88 A LEU 89 n 89 LEU 89 A ARG 90 n 90 ARG 90 A LYS 91 n 91 LYS 91 A ASN 92 n 92 ASN 92 A SER 93 n 93 SER 93 A ASP 94 n 94 ASP 94 A THR 95 n 95 THR 95 A TYR 96 n 96 TYR 96 A GLY 97 n 97 GLY 97 A GLU 98 n 98 GLU 98 A TRP 99 n 99 TRP 99 A THR 100 n 100 THR 100 A GLY 101 n 101 GLY 101 A VAL 102 n 102 VAL 102 A ARG 103 n 103 ARG 103 A LEU 104 n 104 LEU 104 A SER 105 n 105 SER 105 A ASP 106 n 106 ASP 106 A GLU 107 n 107 GLU 107 A ASN 108 n 108 ASN 108 A ARG 109 n 109 ARG 109 A ARG 110 n 110 ARG 110 A GLU 111 n 111 GLU 111 A PHE 112 n 112 PHE 112 A PHE 113 n 113 PHE 113 A ILE 114 n 114 ILE 114 A PRO 115 n 115 PRO 115 A GLU 116 n 116 GLU 116 A GLY 117 n 117 GLY 117 A PHE 118 n 118 PHE 118 A ALA 119 n 119 ALA 119 A HIS 120 n 120 HIS 120 A GLY 121 n 121 GLY 121 A PHE 122 n 122 PHE 122 A LEU 123 n 123 LEU 123 A ALA 124 n 124 ALA 124 A LEU 125 n 125 LEU 125 A SER 126 n 126 SER 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A CYS 129 n 129 CYS 129 A ILE 130 n 130 ILE 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A TYR 133 n 133 TYR 133 A LYS 134 n 134 LYS 134 A CYS 135 n 135 CYS 135 A THR 136 n 136 THR 136 A GLU 137 n 137 GLU 137 A LEU 138 n 138 LEU 138 A TYR 139 n 139 TYR 139 A HIS 140 n 140 HIS 140 A PRO 141 n 141 PRO 141 A GLU 142 n 142 GLU 142 A TYR 143 n 143 TYR 143 A ASP 144 n 144 ASP 144 A SER 145 n 145 SER 145 A GLY 146 n 146 GLY 146 A ILE 147 n 147 ILE 147 A PRO 148 n 148 PRO 148 A TRP 149 n 149 TRP 149 A ASP 150 n 150 ASP 150 A ASP 151 n 151 ASP 151 A PRO 152 n 152 PRO 152 A ASP 153 n 153 ASP 153 A ILE 154 n 154 ILE 154 A GLY 155 n 155 GLY 155 A ILE 156 n 156 ILE 156 A ASP 157 n 157 ASP 157 A TRP 158 n 158 TRP 158 A PRO 159 n 159 PRO 159 A LEU 160 n 160 LEU 160 A GLU 161 n 161 GLU 161 A MET 162 n 162 MET 162 A VAL 163 n 163 VAL 163 A ASP 164 n 164 ASP 164 A ASP 165 n 165 ASP 165 A LEU 166 n 166 LEU 166 A ILE 167 n 167 ILE 167 A ILE 168 n 168 ILE 168 A SER 169 n 169 SER 169 A GLU 170 n 170 GLU 170 A LYS 171 n 171 LYS 171 A ASP 172 n 172 ASP 172 A ARG 173 n 173 ARG 173 A ASN 174 n 174 ASN 174 A TRP 175 n 175 TRP 175 A LYS 176 n 176 LYS 176 A PRO 177 n 177 PRO 177 A LEU 178 n 178 LEU 178 A ARG 179 n 179 ARG 179 A GLU 180 n 180 GLU 180 A ASN 181 n 181 ASN 181 A PRO 182 n 182 PRO 182 A VAL 183 n 183 VAL 183 A TYR 184 n 184 TYR 184 A LEU 185 n 185 LEU 185 A author_and_software_defined_assembly PISA,PQS 2 dimeric 4890 -25 15240 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 61.6882795494 0.0000000000 51.0539522091 A N ILE 7 A N ILE 7 A O ILE 16 A O ILE 16 A N ILE 17 A N ILE 17 A O GLU 111 A O GLU 111 A O ILE 114 A O ILE 114 A N LYS 73 A N LYS 73 A O ARG 79 A O ARG 79 A N ILE 130 A N ILE 130 A N CYS 135 A N CYS 135 A O GLN 49 A O GLN 49 A N ASP 24 A N ASP 24 A O GLY 27 A O GLY 27 A O LEU 104 A O LEU 104 A N ILE 82 A N ILE 82 A N VAL 87 A N VAL 87 A O ALA 119 A O ALA 119 A O PHE 122 A O PHE 122 A N ARG 61 A N ARG 61 A N PHE 65 A N PHE 65 A O SER 145 A O SER 145 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A THR 9 -125.10 -169.62 1 A ASN 41 -94.50 30.25 1 A LEU 43 -110.18 58.09 1 A GLU 44 -66.45 69.48 1 A GLU 68 69.55 -53.70 1 A ARG 109 55.02 18.43 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP CIS_PEPTIDE.PARAM TDP.PARAM TDP.PARAM 18.5 1.39 0.00 -0.64 1.77 0.00 -3.16 Simulated Annealing 0.2250000 0.005 0.1960000 0.1960000 1.75 9.99 1702 63707 17222 9.9 92.8 RANDOM 456278.04 0.00 1 RESTRAINED THROUGHOUT 0.0 CNS 0.9 FLAT MODEL 56.66 0.536 0.23 0.20 5.00 0.14 0.11 1.75 9.99 119 1662 25 0 1518 0.005 1.3 25.7 0.71 0.92 1.50 1.52 2.00 1.58 2.00 2.45 2.50 0.2970000 0.019 0.2430000 1.86 246 2340 6 9.5 83.7 14.2 1.75 25 1EPZ 63707 17671 4862 206 0.0520000 1 24 4 95 0.3210000 1.75 1.81 1708 1 4 92 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOASE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM WITH BOUND LIGAND. 1 N N 2 N N 3 N N The biological assembly is a dimer constructed from Chain A and one symmetry related molecule. A ASN 34 A ASN 34 HELX_P A ASN 41 A ASN 41 1 1 8 A HIS 140 A HIS 140 HELX_P A GLU 142 A GLU 142 5 2 3 A PRO 159 A PRO 159 HELX_P A VAL 163 A VAL 163 5 3 5 A GLU 170 A GLU 170 HELX_P A ASN 174 A ASN 174 5 4 5 ISOMERASE racemase, dTDP-4-dehydrorhamnose epimerase, ISOMERASE A GLY 62 A GLY 62 1 A LEU 63 A LEU 63 -1.72 O27818_METTH UNP 1 1 O27818 MAEFRFIKTSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRG EIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPL EMVDDLIISEKDRNWKPLRENPVYL 1 185 1EPZ 1 185 O27818 A 1 1 185 6 2 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 4 A PHE 4 A LYS 8 A LYS 8 A ILE 15 A ILE 15 A PRO 19 A PRO 19 A GLU 111 A GLU 111 A ILE 114 A ILE 114 A LYS 73 A LYS 73 A ARG 79 A ARG 79 A GLU 128 A GLU 128 A CYS 135 A CYS 135 A GLN 49 A GLN 49 A VAL 56 A VAL 56 A VAL 21 A VAL 21 A ASP 24 A ASP 24 A GLY 27 A GLY 27 A MET 30 A MET 30 A TRP 99 A TRP 99 A SER 105 A SER 105 A GLU 81 A GLU 81 A ASP 88 A ASP 88 A PHE 118 A PHE 118 A ALA 124 A ALA 124 A LEU 60 A LEU 60 A GLN 66 A GLN 66 A ASP 144 A ASP 144 A GLY 146 A GLY 146 BINDING SITE FOR RESIDUE TYD A 2187 A TYD 2187 Software 15 A TYR 22 A TYR 22 15 2_656 A ARG 26 A ARG 26 15 2_656 A PHE 29 A PHE 29 15 2_656 A GLU 31 A GLU 31 15 2_656 A GLN 49 A GLN 49 15 1_555 A ASN 51 A ASN 51 15 1_555 A ARG 61 A ARG 61 15 1_555 A HIS 64 A HIS 64 15 1_555 A TYR 139 A TYR 139 15 1_555 A LYS 171 A LYS 171 15 1_555 A HOH 1035 C HOH 15 1_555 A HOH 1036 C HOH 15 1_555 A HOH 1037 C HOH 15 1_555 A HOH 1040 C HOH 15 1_555 A HOH 1095 C HOH 15 1_555 5 C 1 2 1