1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kim, C.-H.
Kao, C.C.
Tinoco Jr., I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
415
423
10.1038/75202
10802741
RNA motifs that determine specificity between a viral replicase and its promoter.
2000
10.2210/pdb1esh/pdb
pdb_00001esh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4156.541
RNA (5'-R(*GP*GP*UP*GP*CP*AP*UP*AP*GP*CP*AP*CP*C)-3')
1
syn
polymer
no
no
GGUGCAUAGCACC
GGUGCAUAGCACC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-13.149
1
19
A
1
A
13
-4.428
A_G1:C13_A
1
-0.376
-0.151
-0.599
-0.175
-1.591
1
19
A
2
A
12
-5.159
A_G2:C12_A
2
-23.186
-0.041
-0.072
-0.242
9.275
1
20
A
3
A
11
-2.850
A_U3:A11_A
3
-30.218
-0.164
-0.256
-0.137
-7.385
1
19
A
4
A
10
-6.834
A_G4:C10_A
4
-31.796
-0.048
0.153
-0.293
-14.563
1
19
A
5
A
9
0.812
A_C5:G9_A
5
12.215
0.283
1.293
-0.479
11.966
5
A
6
A
8
55.585
A_A6:A8_A
6
43.674
6.073
-0.893
-1.317
3.362
33.304
A
A
1
2
-9.955
A
A
13
12
3.186
-5.678
-1.336
-1.142
AA_G1G2:C12C13_AA
1
-0.795
1.394
32.821
-1.038
2.197
3.026
34.681
A
A
2
3
0.319
A
A
12
11
2.957
0.190
1.083
-0.827
AA_G2U3:A11C12_AA
2
2.734
-4.591
34.576
-1.414
-1.433
3.090
38.234
A
A
3
4
24.558
A
A
11
10
3.679
15.641
-1.266
-0.860
AA_U3G4:C10A11_AA
3
-1.763
2.768
34.955
-3.449
1.692
2.900
37.942
A
A
4
5
2.600
A
A
10
9
3.220
1.686
2.209
-0.725
AA_G4C5:G9C10_AA
4
-4.685
7.225
37.625
-1.317
-3.960
1.810
42.129
A
A
5
6
2.485
A
A
9
8
2.380
1.777
3.448
1.576
AA_C5A6:A8G9_AA
5
-7.617
10.653
41.429
2.075
-5.304
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2000-04-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2000-04-10
REL
REL
SEQUENCE OCCURS NATURALLY IN BROME MOSAIC VIRUS EXCEPT FOR THE TERMINAL TWO GC BPS
sample
THE SUBMITTED STRUCTURE IS THE AVERAGE AND ENERGY MINIMIZED
LOWEST ENERGY
22
1
H2ONOESY
D2ONOESY
HCCH-TO
50mM NACL
6.5
1
atm
278
K
RMD WITH SIMULATED ANNEALING
1
lowest energy
RNA IN AQUEOUS SOLUTION
A.T.BRUNGER
refinement
X-PLOR
3.1
A.T.BRUNGER
structure solution
X-PLOR
3.1
500
Bruker
DRX
600
Bruker
AMX
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
C
5
n
5
C
5
A
A
6
n
6
A
6
A
U
7
n
7
U
7
A
A
8
n
8
A
8
A
G
9
n
9
G
9
A
C
10
n
10
C
10
A
A
11
n
11
A
11
A
C
12
n
12
C
12
A
C
13
n
13
C
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HO2'
OP2
G
C
9
10
1.60
THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
13
A
N4
C
13
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
11
A
N1
A
11
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
11
A
N6
A
11
1_555
hydrog
G-G MISPAIR
A
G
4
A
O6
G
4
1_555
A
G
9
A
N1
G
9
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
10
A
N4
C
10
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
A
G
9
A
N1
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
A
G
9
A
O6
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
A
G
9
A
N2
G
9
1_555
hydrog
A-A MISPAIR
A
A
6
A
N3
A
6
1_555
A
A
8
A
N6
A
8
1_555
RNA
RNA, TRILOOP, STEM-LOOP, Brome Mosaic Virus
1ESH
PDB
1
1ESH
1
13
1ESH
1
13
1ESH
A
1
1
13
1
P 1