1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kim, C.-H. Kao, C.C. Tinoco Jr., I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N O N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 7 415 423 10.1038/75202 10802741 RNA motifs that determine specificity between a viral replicase and its promoter. 2000 10.2210/pdb1esh/pdb pdb_00001esh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4156.541 RNA (5'-R(*GP*GP*UP*GP*CP*AP*UP*AP*GP*CP*AP*CP*C)-3') 1 syn polymer no no GGUGCAUAGCACC GGUGCAUAGCACC A polyribonucleotide n n n n n n n n n n n n n -13.149 1 19 A 1 A 13 -4.428 A_G1:C13_A 1 -0.376 -0.151 -0.599 -0.175 -1.591 1 19 A 2 A 12 -5.159 A_G2:C12_A 2 -23.186 -0.041 -0.072 -0.242 9.275 1 20 A 3 A 11 -2.850 A_U3:A11_A 3 -30.218 -0.164 -0.256 -0.137 -7.385 1 19 A 4 A 10 -6.834 A_G4:C10_A 4 -31.796 -0.048 0.153 -0.293 -14.563 1 19 A 5 A 9 0.812 A_C5:G9_A 5 12.215 0.283 1.293 -0.479 11.966 5 A 6 A 8 55.585 A_A6:A8_A 6 43.674 6.073 -0.893 -1.317 3.362 33.304 A A 1 2 -9.955 A A 13 12 3.186 -5.678 -1.336 -1.142 AA_G1G2:C12C13_AA 1 -0.795 1.394 32.821 -1.038 2.197 3.026 34.681 A A 2 3 0.319 A A 12 11 2.957 0.190 1.083 -0.827 AA_G2U3:A11C12_AA 2 2.734 -4.591 34.576 -1.414 -1.433 3.090 38.234 A A 3 4 24.558 A A 11 10 3.679 15.641 -1.266 -0.860 AA_U3G4:C10A11_AA 3 -1.763 2.768 34.955 -3.449 1.692 2.900 37.942 A A 4 5 2.600 A A 10 9 3.220 1.686 2.209 -0.725 AA_G4C5:G9C10_AA 4 -4.685 7.225 37.625 -1.317 -3.960 1.810 42.129 A A 5 6 2.485 A A 9 8 2.380 1.777 3.448 1.576 AA_C5A6:A8G9_AA 5 -7.617 10.653 41.429 2.075 -5.304 database_2 pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 2000-04-24 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2000-04-10 REL REL SEQUENCE OCCURS NATURALLY IN BROME MOSAIC VIRUS EXCEPT FOR THE TERMINAL TWO GC BPS sample THE SUBMITTED STRUCTURE IS THE AVERAGE AND ENERGY MINIMIZED LOWEST ENERGY 22 1 H2ONOESY D2ONOESY HCCH-TO 50mM NACL 6.5 1 atm 278 K RMD WITH SIMULATED ANNEALING 1 lowest energy RNA IN AQUEOUS SOLUTION A.T.BRUNGER refinement X-PLOR 3.1 A.T.BRUNGER structure solution X-PLOR 3.1 500 Bruker DRX 600 Bruker AMX G 1 n 1 G 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A A 6 n 6 A 6 A U 7 n 7 U 7 A A 8 n 8 A 8 A G 9 n 9 G 9 A C 10 n 10 C 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A C 13 n 13 C 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HO2' OP2 G C 9 10 1.60 THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 13 A N4 C 13 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 12 A N4 C 12 1_555 hydrog WATSON-CRICK A U 3 A N3 U 3 1_555 A A 11 A N1 A 11 1_555 hydrog WATSON-CRICK A U 3 A O4 U 3 1_555 A A 11 A N6 A 11 1_555 hydrog G-G MISPAIR A G 4 A O6 G 4 1_555 A G 9 A N1 G 9 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 10 A N4 C 10 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 9 A N1 G 9 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 9 A O6 G 9 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 9 A N2 G 9 1_555 hydrog A-A MISPAIR A A 6 A N3 A 6 1_555 A A 8 A N6 A 8 1_555 RNA RNA, TRILOOP, STEM-LOOP, Brome Mosaic Virus 1ESH PDB 1 1ESH 1 13 1ESH 1 13 1ESH A 1 1 13 1 P 1