0.019604 0.000000 0.000000 0.000000 0.019324 0.000000 0.000000 0.000000 0.011893 0.00000 0.00000 0.00000 Fonze, E. Charlier, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 51.010 51.750 84.080 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing To be Published 0353 DD-TRANSPEPTIDASE US J.Biol.Chem. JBCHA3 0071 0021-9258 274 21853 21860 10.1074/jbc.274.31.21853 The Crystal Structure of a Penicilloyl-Serine Transferase of Intermediate Penicillin Sensitivity 1999 UK J.Mol.Biol. JMOBAK 0070 0022-2836 241 295 297 10.1006/jmbi.1994.1504 Crystallization and X-Ray Diffraction Study of the Streptomyces K15 Penicillin-Binding Dd-Transpeptidase 1994 10.2210/pdb1esi/pdb pdb_00001esi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1998-10-21 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.375 1.0 D41A LURE 1.375 SYNCHROTRON LURE BEAMLINE D41A 27464.283 DD-TRANSPEPTIDASE 3.4.16.4 R248L 1 man polymer 18.015 water 104 nat water D-ALANYL-D-ALANINE CARBOXYPEPTIDASE, DD-PEPTIDASE no no VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVG DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPALESDATKIMNYGFAL VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVG DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPALESDATKIMNYGFAL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Streptomyces K15 Streptomyces Streptomyces lividans sample 1958 Streptomyces sp. 457428 Streptomyces lividans TK24 TK24 1 2.02 39.11 VAPOR DIFFUSION, HANGING DROP 7.2 Tris 0.1M, PEG 6K 27 to 33%, NaCl 0.4M, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Source and taxonomy Version format compliance Refinement description Database references Data collection 1 0 2000-05-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2021-11-03 1 5 2024-02-07 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 1SKF contains the wild type protein. K38H MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE S96A MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE C98N MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE S216A MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE C98A MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE RCSB Y RCSB 2000-04-10 REL REL HOH water WAT 301 2 HOH HOH 301 A WAT 302 2 HOH HOH 302 A WAT 303 2 HOH HOH 303 A WAT 304 2 HOH HOH 304 A WAT 305 2 HOH HOH 305 A WAT 306 2 HOH HOH 306 A WAT 307 2 HOH HOH 307 A WAT 308 2 HOH HOH 308 A WAT 309 2 HOH HOH 309 A WAT 310 2 HOH HOH 310 A WAT 311 2 HOH HOH 311 A WAT 312 2 HOH HOH 312 A WAT 313 2 HOH HOH 313 A WAT 314 2 HOH HOH 314 A WAT 315 2 HOH HOH 315 A WAT 316 2 HOH HOH 316 A WAT 317 2 HOH HOH 317 A WAT 318 2 HOH HOH 318 A WAT 319 2 HOH HOH 319 A WAT 320 2 HOH HOH 320 A WAT 321 2 HOH HOH 321 A WAT 322 2 HOH HOH 322 A WAT 323 2 HOH HOH 323 A WAT 324 2 HOH HOH 324 A WAT 325 2 HOH HOH 325 A WAT 326 2 HOH HOH 326 A WAT 327 2 HOH HOH 327 A WAT 328 2 HOH HOH 328 A WAT 329 2 HOH HOH 329 A WAT 330 2 HOH HOH 330 A WAT 331 2 HOH HOH 331 A WAT 332 2 HOH HOH 332 A WAT 333 2 HOH HOH 333 A WAT 334 2 HOH HOH 334 A WAT 335 2 HOH HOH 335 A WAT 336 2 HOH HOH 336 A WAT 337 2 HOH HOH 337 A WAT 338 2 HOH HOH 338 A WAT 339 2 HOH HOH 339 A WAT 340 2 HOH HOH 340 A WAT 341 2 HOH HOH 341 A WAT 342 2 HOH HOH 342 A WAT 343 2 HOH HOH 343 A WAT 344 2 HOH HOH 344 A WAT 345 2 HOH HOH 345 A WAT 346 2 HOH HOH 346 A WAT 347 2 HOH HOH 347 A WAT 348 2 HOH HOH 348 A WAT 349 2 HOH HOH 349 A WAT 350 2 HOH HOH 350 A WAT 351 2 HOH HOH 351 A WAT 352 2 HOH HOH 352 A WAT 353 2 HOH HOH 353 A WAT 354 2 HOH HOH 354 A WAT 355 2 HOH HOH 355 A WAT 356 2 HOH HOH 356 A WAT 357 2 HOH HOH 357 A WAT 358 2 HOH HOH 358 A WAT 359 2 HOH HOH 359 A WAT 361 2 HOH HOH 361 A WAT 362 2 HOH HOH 362 A WAT 363 2 HOH HOH 363 A WAT 364 2 HOH HOH 364 A WAT 365 2 HOH HOH 365 A WAT 366 2 HOH HOH 366 A WAT 367 2 HOH HOH 367 A WAT 368 2 HOH HOH 368 A WAT 369 2 HOH HOH 369 A WAT 370 2 HOH HOH 370 A WAT 371 2 HOH HOH 371 A WAT 372 2 HOH HOH 372 A WAT 373 2 HOH HOH 373 A WAT 374 2 HOH HOH 374 A WAT 375 2 HOH HOH 375 A WAT 376 2 HOH HOH 376 A WAT 377 2 HOH HOH 377 A WAT 378 2 HOH HOH 378 A WAT 379 2 HOH HOH 379 A WAT 380 2 HOH HOH 380 A WAT 381 2 HOH HOH 381 A WAT 382 2 HOH HOH 382 A WAT 383 2 HOH HOH 383 A WAT 384 2 HOH HOH 384 A WAT 385 2 HOH HOH 385 A WAT 386 2 HOH HOH 386 A WAT 387 2 HOH HOH 387 A WAT 388 2 HOH HOH 388 A WAT 389 2 HOH HOH 389 A WAT 390 2 HOH HOH 390 A WAT 391 2 HOH HOH 391 A WAT 392 2 HOH HOH 392 A WAT 393 2 HOH HOH 393 A WAT 394 2 HOH HOH 394 A WAT 395 2 HOH HOH 395 A WAT 396 2 HOH HOH 396 A WAT 397 2 HOH HOH 397 A WAT 399 2 HOH HOH 399 A WAT 400 2 HOH HOH 400 A WAT 401 2 HOH HOH 401 A WAT 402 2 HOH HOH 402 A WAT 403 2 HOH HOH 403 A WAT 404 2 HOH HOH 404 A WAT 405 2 HOH HOH 405 A WAT 407 2 HOH HOH 407 A n 1 1 A n 2 2 A LYS 3 n 3 LYS 3 A PRO 4 n 4 PRO 4 A THR 5 n 5 THR 5 A ILE 6 n 6 ILE 6 A ALA 7 n 7 ALA 7 A ALA 8 n 8 ALA 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A GLY 11 n 11 GLY 11 A TYR 12 n 12 TYR 12 A ALA 13 n 13 ALA 13 A MET 14 n 14 MET 14 A ASN 15 n 15 ASN 15 A ASN 16 n 16 ASN 16 A GLY 17 n 17 GLY 17 A THR 18 n 18 THR 18 A GLY 19 n 19 GLY 19 A THR 20 n 20 THR 20 A THR 21 n 21 THR 21 A LEU 22 n 22 LEU 22 A TYR 23 n 23 TYR 23 A THR 24 n 24 THR 24 A LYS 25 n 25 LYS 25 A ALA 26 n 26 ALA 26 A ALA 27 n 27 ALA 27 A ASP 28 n 28 ASP 28 A THR 29 n 29 THR 29 A ARG 30 n 30 ARG 30 A ARG 31 n 31 ARG 31 A SER 32 n 32 SER 32 A THR 33 n 33 THR 33 A GLY 34 n 34 GLY 34 A SER 35 n 35 SER 35 A THR 36 n 36 THR 36 A THR 37 n 37 THR 37 A LYS 38 n 38 LYS 38 A ILE 39 n 39 ILE 39 A MET 40 n 40 MET 40 A THR 41 n 41 THR 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A VAL 44 n 44 VAL 44 A VAL 45 n 45 VAL 45 A LEU 46 n 46 LEU 46 A ALA 47 n 47 ALA 47 A GLN 48 n 48 GLN 48 A SER 49 n 49 SER 49 A ASN 50 n 50 ASN 50 A LEU 51 n 51 LEU 51 A ASN 52 n 52 ASN 52 A LEU 53 n 53 LEU 53 A ASP 54 n 54 ASP 54 A ALA 55 n 55 ALA 55 A LYS 56 n 56 LYS 56 A VAL 57 n 57 VAL 57 A THR 58 n 58 THR 58 A ILE 59 n 59 ILE 59 A GLN 60 n 60 GLN 60 A LYS 61 n 61 LYS 61 A ALA 62 n 62 ALA 62 A TYR 63 n 63 TYR 63 A SER 64 n 64 SER 64 A ASP 65 n 65 ASP 65 A TYR 66 n 66 TYR 66 A VAL 67 n 67 VAL 67 A VAL 68 n 68 VAL 68 A ALA 69 n 69 ALA 69 A ASN 70 n 70 ASN 70 A ASN 71 n 71 ASN 71 A ALA 72 n 72 ALA 72 A SER 73 n 73 SER 73 A GLN 74 n 74 GLN 74 A ALA 75 n 75 ALA 75 A HIS 76 n 76 HIS 76 A LEU 77 n 77 LEU 77 A ILE 78 n 78 ILE 78 A VAL 79 n 79 VAL 79 A GLY 80 n 80 GLY 80 A ASP 81 n 81 ASP 81 A LYS 82 n 82 LYS 82 A VAL 83 n 83 VAL 83 A THR 84 n 84 THR 84 A VAL 85 n 85 VAL 85 A ARG 86 n 86 ARG 86 A GLN 87 n 87 GLN 87 A LEU 88 n 88 LEU 88 A LEU 89 n 89 LEU 89 A TYR 90 n 90 TYR 90 A GLY 91 n 91 GLY 91 A LEU 92 n 92 LEU 92 A MET 93 n 93 MET 93 A LEU 94 n 94 LEU 94 A PRO 95 n 95 PRO 95 A SER 96 n 96 SER 96 A GLY 97 n 97 GLY 97 A CYS 98 n 98 CYS 98 A ASP 99 n 99 ASP 99 A ALA 100 n 100 ALA 100 A ALA 101 n 101 ALA 101 A TYR 102 n 102 TYR 102 A ALA 103 n 103 ALA 103 A LEU 104 n 104 LEU 104 A ALA 105 n 105 ALA 105 A ASP 106 n 106 ASP 106 A LYS 107 n 107 LYS 107 A TYR 108 n 108 TYR 108 A GLY 109 n 109 GLY 109 A SER 110 n 110 SER 110 A GLY 111 n 111 GLY 111 A SER 112 n 112 SER 112 A THR 113 n 113 THR 113 A ARG 114 n 114 ARG 114 A ALA 115 n 115 ALA 115 A ALA 116 n 116 ALA 116 A ARG 117 n 117 ARG 117 A VAL 118 n 118 VAL 118 A LYS 119 n 119 LYS 119 A SER 120 n 120 SER 120 A PHE 121 n 121 PHE 121 A ILE 122 n 122 ILE 122 A GLY 123 n 123 GLY 123 A LYS 124 n 124 LYS 124 A MET 125 n 125 MET 125 A ASN 126 n 126 ASN 126 A THR 127 n 127 THR 127 A ALA 128 n 128 ALA 128 A ALA 129 n 129 ALA 129 A THR 130 n 130 THR 130 A ASN 131 n 131 ASN 131 A LEU 132 n 132 LEU 132 A GLY 133 n 133 GLY 133 A LEU 134 n 134 LEU 134 A HIS 135 n 135 HIS 135 A ASN 136 n 136 ASN 136 A THR 137 n 137 THR 137 A HIS 138 n 138 HIS 138 A PHE 139 n 139 PHE 139 A ASP 140 n 140 ASP 140 A SER 141 n 141 SER 141 A PHE 142 n 142 PHE 142 A ASP 143 n 143 ASP 143 A GLY 144 n 144 GLY 144 A ILE 145 n 145 ILE 145 A GLY 146 n 146 GLY 146 A ASN 147 n 147 ASN 147 A GLY 148 n 148 GLY 148 A ALA 149 n 149 ALA 149 A ASN 150 n 150 ASN 150 A TYR 151 n 151 TYR 151 A SER 152 n 152 SER 152 A THR 153 n 153 THR 153 A PRO 154 n 154 PRO 154 A ARG 155 n 155 ARG 155 A ASP 156 n 156 ASP 156 A LEU 157 n 157 LEU 157 A THR 158 n 158 THR 158 A LYS 159 n 159 LYS 159 A ILE 160 n 160 ILE 160 A ALA 161 n 161 ALA 161 A SER 162 n 162 SER 162 A SER 163 n 163 SER 163 A ALA 164 n 164 ALA 164 A MET 165 n 165 MET 165 A LYS 166 n 166 LYS 166 A ASN 167 n 167 ASN 167 A SER 168 n 168 SER 168 A THR 169 n 169 THR 169 A PHE 170 n 170 PHE 170 A ARG 171 n 171 ARG 171 A THR 172 n 172 THR 172 A VAL 173 n 173 VAL 173 A VAL 174 n 174 VAL 174 A LYS 175 n 175 LYS 175 A THR 176 n 176 THR 176 A LYS 177 n 177 LYS 177 A ALA 178 n 178 ALA 178 A TYR 179 n 179 TYR 179 A THR 180 n 180 THR 180 A ALA 181 n 181 ALA 181 A LYS 182 n 182 LYS 182 A THR 183 n 183 THR 183 A VAL 184 n 184 VAL 184 A THR 185 n 185 THR 185 A LYS 186 n 186 LYS 186 A THR 187 n 187 THR 187 A GLY 188 n 188 GLY 188 A SER 189 n 189 SER 189 A ILE 190 n 190 ILE 190 A ARG 191 n 191 ARG 191 A THR 192 n 192 THR 192 A MET 193 n 193 MET 193 A ASP 194 n 194 ASP 194 A THR 195 n 195 THR 195 A TRP 196 n 196 TRP 196 A LYS 197 n 197 LYS 197 A ASN 198 n 198 ASN 198 A THR 199 n 199 THR 199 A ASN 200 n 200 ASN 200 A GLY 201 n 201 GLY 201 A LEU 202 n 202 LEU 202 A LEU 203 n 203 LEU 203 A SER 204 n 204 SER 204 A SER 205 n 205 SER 205 A TYR 206 n 206 TYR 206 A SER 207 n 207 SER 207 A GLY 208 n 208 GLY 208 A ALA 209 n 209 ALA 209 A ILE 210 n 210 ILE 210 A GLY 211 n 211 GLY 211 A VAL 212 n 212 VAL 212 A LYS 213 n 213 LYS 213 A THR 214 n 214 THR 214 A GLY 215 n 215 GLY 215 A SER 216 n 216 SER 216 A GLY 217 n 217 GLY 217 A PRO 218 n 218 PRO 218 A GLU 219 n 219 GLU 219 A ALA 220 n 220 ALA 220 A LYS 221 n 221 LYS 221 A TYR 222 n 222 TYR 222 A CYS 223 n 223 CYS 223 A LEU 224 n 224 LEU 224 A VAL 225 n 225 VAL 225 A PHE 226 n 226 PHE 226 A ALA 227 n 227 ALA 227 A ALA 228 n 228 ALA 228 A THR 229 n 229 THR 229 A ARG 230 n 230 ARG 230 A GLY 231 n 231 GLY 231 A GLY 232 n 232 GLY 232 A LYS 233 n 233 LYS 233 A THR 234 n 234 THR 234 A VAL 235 n 235 VAL 235 A ILE 236 n 236 ILE 236 A GLY 237 n 237 GLY 237 A THR 238 n 238 THR 238 A VAL 239 n 239 VAL 239 A LEU 240 n 240 LEU 240 A ALA 241 n 241 ALA 241 A SER 242 n 242 SER 242 A THR 243 n 243 THR 243 A SER 244 n 244 SER 244 A ILE 245 n 245 ILE 245 A PRO 246 n 246 PRO 246 A ALA 247 n 247 ALA 247 A LEU 248 n 248 LEU 248 A GLU 249 n 249 GLU 249 A SER 250 n 250 SER 250 A ASP 251 n 251 ASP 251 A ALA 252 n 252 ALA 252 A THR 253 n 253 THR 253 A LYS 254 n 254 LYS 254 A ILE 255 n 255 ILE 255 A MET 256 n 256 MET 256 A ASN 257 n 257 ASN 257 A TYR 258 n 258 TYR 258 A GLY 259 n 259 GLY 259 A PHE 260 n 260 PHE 260 A ALA 261 n 261 ALA 261 A LEU 262 n 262 LEU 262 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 25 A O LYS 25 A N GLY 11 A N GLY 11 A N MET 14 A N MET 14 A O ILE 236 A O ILE 236 A N VAL 239 A N VAL 239 A O LEU 224 A O LEU 224 A O ALA 227 A O ALA 227 A N ILE 210 A N ILE 210 A N ARG 31 A N ARG 31 A O SER 152 A O SER 152 A N VAL 57 A N VAL 57 A O VAL 83 A O VAL 83 A O TYR 179 A O TYR 179 A N TRP 196 A N TRP 196 A O THR 183 A O THR 183 A N ARG 191 A N ARG 191 1 A VAL 1 A VAL 1 1 Y 1 A THR 2 A THR 2 1 Y 1 A A CA N GLY VAL 211 212 1.48 1 17.65 2.50 113.10 130.75 A A A N CA C GLY GLY GLY 211 211 211 N 1 -35.57 1.80 120.60 85.03 A A A CA C O GLY GLY GLY 211 211 211 N 1 -56.27 2.20 117.20 60.93 A A A CA C N GLY GLY VAL 211 211 212 Y 1 23.26 1.60 122.70 145.96 A A A O C N GLY GLY VAL 211 211 212 Y 1 A SER 96 71.37 65.01 1 A SER 152 -162.23 -168.17 1 A VAL 212 70.28 -86.87 1 A LYS 221 21.92 -102.72 PROTEIN_REP.PARAM TOPHCSDX.PRO TIP3P.PARAMETER TIP3P.TOPOLOGY 13.7 0.00 0.00 0.00 0.00 0.00 0.00 0.2330000 0.005 0.1810000 0.1810000 1.80 8.00 1902 19183 9.9 91.4 RANDOM 100000.00 0.10 1 RESTRAINED 3.0 0.23 0.18 5.00 0.12 0.14 1.80 8.00 104 2014 0 0 1910 0.006 1.9 25.0 0.63 1.68 1.50 2.55 2.00 2.98 2.00 4.29 2.50 0.2470000 0.022 0.2320000 1.86 125 1384 10 8.3 72.7 11.1 1.80 22.19 1ESI 21066 0.0 0.0 0.0690000 1 8.3 3.8 98.8 0.2050000 1.80 1.85 1286 1 3.3 84.1 phasing AMoRE refinement X-PLOR 3.851 data reduction MOSFLM data scaling CCP4 (SCALA data scaling TRUNCATE R248L MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE 1 N N 2 N N The biological assembly is a monomer A GLY 34 A GLY 34 HELX_P A THR 36 A THR 36 5 1 3 A THR 37 A THR 37 HELX_P A GLN 48 A GLN 48 1 2 12 A GLN 60 A GLN 60 HELX_P A ASN 71 A ASN 71 1 3 12 A VAL 85 A VAL 85 HELX_P A LEU 94 A LEU 94 1 4 10 A GLY 97 A GLY 97 HELX_P A GLY 109 A GLY 109 1 5 13 A THR 113 A THR 113 HELX_P A LEU 132 A LEU 132 1 6 20 A THR 153 A THR 153 HELX_P A MET 165 A MET 165 1 7 13 A ASN 167 A ASN 167 HELX_P A LYS 175 A LYS 175 1 8 9 A GLY 201 A GLY 201 HELX_P A TYR 206 A TYR 206 1 9 6 A SER 244 A SER 244 HELX_P A LEU 262 A LEU 262 1 10 19 HYDROLASE PENICILLIN-BINDING, DD-TRANSPEPTIDASE, SERINE PEPTIDASE, BETA-LACTAMASE, HYDROLASE CARBOXYPEPTIDASE, HYDROLASE DACX_STRSK UNP 1 30 P39042 VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANKPSQAHLIVG DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSQAAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRHLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPARESDATKIMNYGFAL 30 291 1ESI 1 262 P39042 A 1 1 262 1 LYS conflict ASN 71 1ESI A P39042 UNP 100 71 1 PRO conflict ALA 72 1ESI A P39042 UNP 101 72 1 GLN conflict THR 113 1ESI A P39042 UNP 142 113 1 ALA conflict ARG 114 1ESI A P39042 UNP 143 114 1 HIS conflict ASP 156 1ESI A P39042 UNP 185 156 1 ARG engineered mutation LEU 248 1ESI A P39042 UNP 277 248 5 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 21 A THR 21 A LYS 25 A LYS 25 A GLY 10 A GLY 10 A ASN 15 A ASN 15 A LYS 233 A LYS 233 A LEU 240 A LEU 240 A LYS 221 A LYS 221 A ARG 230 A ARG 230 A ALA 209 A ALA 209 A GLY 217 A GLY 217 A ARG 31 A ARG 31 A SER 32 A SER 32 A TYR 151 A TYR 151 A SER 152 A SER 152 A LYS 56 A LYS 56 A THR 58 A THR 58 A LYS 82 A LYS 82 A THR 84 A THR 84 A ALA 178 A ALA 178 A TYR 179 A TYR 179 A TRP 196 A TRP 196 A LYS 197 A LYS 197 A LYS 182 A LYS 182 A VAL 184 A VAL 184 A ILE 190 A ILE 190 A THR 192 A THR 192 19 P 21 21 21