1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Morellet, N.
Demene, H.
Teilleux, V.
Huynh-Dinh, T.
de Rocquigny, H.
Fournie-Zaluski, M.-C.
Roques, B.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Solution Structure of (12-53)NCp7 of HIV-1
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
235
287
301
Conformational Behaviour of the Active and Inactive Forms of the Nucleocapsid NCp7 of HIV-1 Studied by 1H NMR.
1994
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
283
419
434
10.1006/jmbi.1998.2098
Structure of the Complex Between the HIV-1 Nucleocapsid Protein and the Single-stranded Pentanucleotide d(ACGCC).
1998
10.2210/pdb1esk/pdb
pdb_00001esk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4837.642
GAG POLYPROTEIN
RESIDUES 12-53
1
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
NUCLEOCAPSID PROTEIN NCP7
no
no
NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ
NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-04-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-04-10
REL
REL
ZN
ZINC ION
The protein was chemically synthesized. The sequence is naturally found in human immunodeficiency virus type 1 (HIV-1).
sample
This structure was determined using standard 2D homonuclear techniques.
structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy
50
9
2D NOESY
DQF-COSY
TOCSY
n.a.
6.0
ambient
293
K
the structures are based on a total of 444 NOE-derived distance constraints
simulated annealing
1
lowest energy
2mM (12-53)NCp7, 90%H2O, 10% D2O, pH 6.0
90% H2O/10% D2O
Bruker
collection
UXNMR
940501
MSI
refinement
Discover
600
Bruker
AMX
ZIN
54
2
ZN
ZN
54
A
ZIN
55
2
ZN
ZN
55
A
ASN
12
n
1
ASN
12
A
VAL
13
n
2
VAL
13
A
LYS
14
n
3
LYS
14
A
CYS
15
n
4
CYS
15
A
PHE
16
n
5
PHE
16
A
ASN
17
n
6
ASN
17
A
CYS
18
n
7
CYS
18
A
GLY
19
n
8
GLY
19
A
LYS
20
n
9
LYS
20
A
GLU
21
n
10
GLU
21
A
GLY
22
n
11
GLY
22
A
HIS
23
n
12
HIS
23
A
THR
24
n
13
THR
24
A
ALA
25
n
14
ALA
25
A
ARG
26
n
15
ARG
26
A
ASN
27
n
16
ASN
27
A
CYS
28
n
17
CYS
28
A
ARG
29
n
18
ARG
29
A
ALA
30
n
19
ALA
30
A
PRO
31
n
20
PRO
31
A
ARG
32
n
21
ARG
32
A
LYS
33
n
22
LYS
33
A
LYS
34
n
23
LYS
34
A
GLY
35
n
24
GLY
35
A
CYS
36
n
25
CYS
36
A
TRP
37
n
26
TRP
37
A
LYS
38
n
27
LYS
38
A
CYS
39
n
28
CYS
39
A
GLY
40
n
29
GLY
40
A
LYS
41
n
30
LYS
41
A
GLU
42
n
31
GLU
42
A
GLY
43
n
32
GLY
43
A
HIS
44
n
33
HIS
44
A
GLN
45
n
34
GLN
45
A
MET
46
n
35
MET
46
A
LYS
47
n
36
LYS
47
A
ASP
48
n
37
ASP
48
A
CYS
49
n
38
CYS
49
A
THR
50
n
39
THR
50
A
GLU
51
n
40
GLU
51
A
ARG
52
n
41
ARG
52
A
GLN
53
n
42
GLN
53
A
author_defined_assembly
1
monomeric
A
CYS
15
A
SG
CYS
4
1_555
A
ZN
54
B
ZN
ZN
1_555
A
CYS
18
A
SG
CYS
7
1_555
112.7
A
CYS
15
A
SG
CYS
4
1_555
A
ZN
54
B
ZN
ZN
1_555
A
HIS
23
A
NE2
HIS
12
1_555
105.2
A
CYS
18
A
SG
CYS
7
1_555
A
ZN
54
B
ZN
ZN
1_555
A
HIS
23
A
NE2
HIS
12
1_555
109.4
A
CYS
15
A
SG
CYS
4
1_555
A
ZN
54
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
17
1_555
109.0
A
CYS
18
A
SG
CYS
7
1_555
A
ZN
54
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
17
1_555
110.5
A
HIS
23
A
NE2
HIS
12
1_555
A
ZN
54
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
17
1_555
109.8
A
CYS
36
A
SG
CYS
25
1_555
A
ZN
55
C
ZN
ZN
1_555
A
CYS
39
A
SG
CYS
28
1_555
112.4
A
CYS
36
A
SG
CYS
25
1_555
A
ZN
55
C
ZN
ZN
1_555
A
HIS
44
A
NE2
HIS
33
1_555
108.6
A
CYS
39
A
SG
CYS
28
1_555
A
ZN
55
C
ZN
ZN
1_555
A
HIS
44
A
NE2
HIS
33
1_555
109.9
A
CYS
36
A
SG
CYS
25
1_555
A
ZN
55
C
ZN
ZN
1_555
A
CYS
49
A
SG
CYS
38
1_555
106.5
A
CYS
39
A
SG
CYS
28
1_555
A
ZN
55
C
ZN
ZN
1_555
A
CYS
49
A
SG
CYS
38
1_555
113.3
A
HIS
44
A
NE2
HIS
33
1_555
A
ZN
55
C
ZN
ZN
1_555
A
CYS
49
A
SG
CYS
38
1_555
105.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
4
A
ARG
52
0.079
SIDE CHAIN
1
-15.20
2.10
128.40
113.20
A
A
A
C
N
CD
ALA
PRO
PRO
30
31
31
Y
3
-14.50
2.10
128.40
113.90
A
A
A
C
N
CD
ALA
PRO
PRO
30
31
31
Y
7
7.32
1.20
111.50
118.82
A
A
A
CB
CA
C
CYS
CYS
CYS
15
15
15
N
8
-15.03
2.10
128.40
113.37
A
A
A
C
N
CD
ALA
PRO
PRO
30
31
31
Y
1
A
ASN
17
-54.39
-83.58
1
A
ARG
29
-111.20
56.40
1
A
PRO
31
40.77
164.95
1
A
LYS
38
-121.43
-60.13
1
A
HIS
44
151.89
168.23
2
A
PRO
31
32.76
178.63
3
A
VAL
13
-35.98
135.04
3
A
ASN
17
-57.68
-84.46
3
A
ARG
29
-114.28
55.76
3
A
PRO
31
40.37
173.00
3
A
HIS
44
149.81
163.97
4
A
GLU
21
55.52
171.33
4
A
PRO
31
31.76
176.03
5
A
CYS
18
-131.63
-43.39
5
A
GLU
21
74.91
171.55
5
A
PRO
31
34.41
170.47
5
A
LYS
38
-101.42
-60.93
5
A
HIS
44
146.95
165.22
6
A
PRO
31
33.84
174.59
6
A
LYS
38
-103.17
-62.59
6
A
HIS
44
153.75
162.22
6
A
ARG
52
-88.07
46.08
7
A
VAL
13
-35.72
135.03
7
A
PRO
31
32.99
176.58
7
A
LYS
38
-106.46
-63.87
7
A
HIS
44
151.29
160.19
7
A
ARG
52
-154.15
36.86
8
A
ASN
17
-52.26
-80.27
8
A
ARG
29
-110.25
58.43
8
A
PRO
31
40.18
165.49
8
A
THR
50
-96.15
-75.69
8
A
GLU
51
-167.65
32.86
9
A
VAL
13
-36.94
135.28
9
A
CYS
18
-136.26
-35.63
9
A
GLU
21
64.55
167.65
9
A
PRO
31
36.47
169.80
9
A
GLU
42
-145.97
-4.14
SOLUTION STRUCTURE OF NCP7 FROM HIV-1
1
N
N
2
N
N
2
N
N
metalc
2.252
A
CYS
15
A
SG
CYS
4
1_555
A
ZN
54
B
ZN
ZN
1_555
metalc
2.220
A
CYS
18
A
SG
CYS
7
1_555
A
ZN
54
B
ZN
ZN
1_555
metalc
2.004
A
HIS
23
A
NE2
HIS
12
1_555
A
ZN
54
B
ZN
ZN
1_555
metalc
2.236
A
CYS
28
A
SG
CYS
17
1_555
A
ZN
54
B
ZN
ZN
1_555
metalc
2.248
A
CYS
36
A
SG
CYS
25
1_555
A
ZN
55
C
ZN
ZN
1_555
metalc
2.226
A
CYS
39
A
SG
CYS
28
1_555
A
ZN
55
C
ZN
ZN
1_555
metalc
2.026
A
HIS
44
A
NE2
HIS
33
1_555
A
ZN
55
C
ZN
ZN
1_555
metalc
2.185
A
CYS
49
A
SG
CYS
38
1_555
A
ZN
55
C
ZN
ZN
1_555
VIRAL PROTEIN
(12-53)NCp7, HIV-1, PROTEIN, Viral protein
POL_HV1H2
UNP
1
388
P04585
IVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ
388
429
1ESK
12
53
P04585
A
1
1
42
1
ILE
conflict
ASN
12
1ESK
A
P04585
UNP
388
1
BINDING SITE FOR RESIDUE ZN A 54
A
ZN
54
Software
4
BINDING SITE FOR RESIDUE ZN A 55
A
ZN
55
Software
5
A
CYS
15
A
CYS
4
4
1_555
A
CYS
18
A
CYS
7
4
1_555
A
HIS
23
A
HIS
12
4
1_555
A
CYS
28
A
CYS
17
4
1_555
A
CYS
36
A
CYS
25
5
1_555
A
CYS
39
A
CYS
28
5
1_555
A
HIS
44
A
HIS
33
5
1_555
A
CYS
49
A
CYS
38
5
1_555
A
GLU
51
A
GLU
40
5
1_555
1
P 1