1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Morellet, N. Demene, H. Teilleux, V. Huynh-Dinh, T. de Rocquigny, H. Fournie-Zaluski, M.-C. Roques, B.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer To be Published 0353 Solution Structure of (12-53)NCp7 of HIV-1 UK J.Mol.Biol. JMOBAK 0070 0022-2836 235 287 301 Conformational Behaviour of the Active and Inactive Forms of the Nucleocapsid NCp7 of HIV-1 Studied by 1H NMR. 1994 UK J.Mol.Biol. JMOBAK 0070 0022-2836 283 419 434 10.1006/jmbi.1998.2098 Structure of the Complex Between the HIV-1 Nucleocapsid Protein and the Single-stranded Pentanucleotide d(ACGCC). 1998 10.2210/pdb1esk/pdb pdb_00001esk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4837.642 GAG POLYPROTEIN RESIDUES 12-53 1 syn polymer 65.409 ZINC ION 2 syn non-polymer NUCLEOCAPSID PROTEIN NCP7 no no NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-04-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-04-10 REL REL ZN ZINC ION The protein was chemically synthesized. The sequence is naturally found in human immunodeficiency virus type 1 (HIV-1). sample This structure was determined using standard 2D homonuclear techniques. structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy 50 9 2D NOESY DQF-COSY TOCSY n.a. 6.0 ambient 293 K the structures are based on a total of 444 NOE-derived distance constraints simulated annealing 1 lowest energy 2mM (12-53)NCp7, 90%H2O, 10% D2O, pH 6.0 90% H2O/10% D2O Bruker collection UXNMR 940501 MSI refinement Discover 600 Bruker AMX ZIN 54 2 ZN ZN 54 A ZIN 55 2 ZN ZN 55 A ASN 12 n 1 ASN 12 A VAL 13 n 2 VAL 13 A LYS 14 n 3 LYS 14 A CYS 15 n 4 CYS 15 A PHE 16 n 5 PHE 16 A ASN 17 n 6 ASN 17 A CYS 18 n 7 CYS 18 A GLY 19 n 8 GLY 19 A LYS 20 n 9 LYS 20 A GLU 21 n 10 GLU 21 A GLY 22 n 11 GLY 22 A HIS 23 n 12 HIS 23 A THR 24 n 13 THR 24 A ALA 25 n 14 ALA 25 A ARG 26 n 15 ARG 26 A ASN 27 n 16 ASN 27 A CYS 28 n 17 CYS 28 A ARG 29 n 18 ARG 29 A ALA 30 n 19 ALA 30 A PRO 31 n 20 PRO 31 A ARG 32 n 21 ARG 32 A LYS 33 n 22 LYS 33 A LYS 34 n 23 LYS 34 A GLY 35 n 24 GLY 35 A CYS 36 n 25 CYS 36 A TRP 37 n 26 TRP 37 A LYS 38 n 27 LYS 38 A CYS 39 n 28 CYS 39 A GLY 40 n 29 GLY 40 A LYS 41 n 30 LYS 41 A GLU 42 n 31 GLU 42 A GLY 43 n 32 GLY 43 A HIS 44 n 33 HIS 44 A GLN 45 n 34 GLN 45 A MET 46 n 35 MET 46 A LYS 47 n 36 LYS 47 A ASP 48 n 37 ASP 48 A CYS 49 n 38 CYS 49 A THR 50 n 39 THR 50 A GLU 51 n 40 GLU 51 A ARG 52 n 41 ARG 52 A GLN 53 n 42 GLN 53 A author_defined_assembly 1 monomeric A CYS 15 A SG CYS 4 1_555 A ZN 54 B ZN ZN 1_555 A CYS 18 A SG CYS 7 1_555 112.7 A CYS 15 A SG CYS 4 1_555 A ZN 54 B ZN ZN 1_555 A HIS 23 A NE2 HIS 12 1_555 105.2 A CYS 18 A SG CYS 7 1_555 A ZN 54 B ZN ZN 1_555 A HIS 23 A NE2 HIS 12 1_555 109.4 A CYS 15 A SG CYS 4 1_555 A ZN 54 B ZN ZN 1_555 A CYS 28 A SG CYS 17 1_555 109.0 A CYS 18 A SG CYS 7 1_555 A ZN 54 B ZN ZN 1_555 A CYS 28 A SG CYS 17 1_555 110.5 A HIS 23 A NE2 HIS 12 1_555 A ZN 54 B ZN ZN 1_555 A CYS 28 A SG CYS 17 1_555 109.8 A CYS 36 A SG CYS 25 1_555 A ZN 55 C ZN ZN 1_555 A CYS 39 A SG CYS 28 1_555 112.4 A CYS 36 A SG CYS 25 1_555 A ZN 55 C ZN ZN 1_555 A HIS 44 A NE2 HIS 33 1_555 108.6 A CYS 39 A SG CYS 28 1_555 A ZN 55 C ZN ZN 1_555 A HIS 44 A NE2 HIS 33 1_555 109.9 A CYS 36 A SG CYS 25 1_555 A ZN 55 C ZN ZN 1_555 A CYS 49 A SG CYS 38 1_555 106.5 A CYS 39 A SG CYS 28 1_555 A ZN 55 C ZN ZN 1_555 A CYS 49 A SG CYS 38 1_555 113.3 A HIS 44 A NE2 HIS 33 1_555 A ZN 55 C ZN ZN 1_555 A CYS 49 A SG CYS 38 1_555 105.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 A ARG 52 0.079 SIDE CHAIN 1 -15.20 2.10 128.40 113.20 A A A C N CD ALA PRO PRO 30 31 31 Y 3 -14.50 2.10 128.40 113.90 A A A C N CD ALA PRO PRO 30 31 31 Y 7 7.32 1.20 111.50 118.82 A A A CB CA C CYS CYS CYS 15 15 15 N 8 -15.03 2.10 128.40 113.37 A A A C N CD ALA PRO PRO 30 31 31 Y 1 A ASN 17 -54.39 -83.58 1 A ARG 29 -111.20 56.40 1 A PRO 31 40.77 164.95 1 A LYS 38 -121.43 -60.13 1 A HIS 44 151.89 168.23 2 A PRO 31 32.76 178.63 3 A VAL 13 -35.98 135.04 3 A ASN 17 -57.68 -84.46 3 A ARG 29 -114.28 55.76 3 A PRO 31 40.37 173.00 3 A HIS 44 149.81 163.97 4 A GLU 21 55.52 171.33 4 A PRO 31 31.76 176.03 5 A CYS 18 -131.63 -43.39 5 A GLU 21 74.91 171.55 5 A PRO 31 34.41 170.47 5 A LYS 38 -101.42 -60.93 5 A HIS 44 146.95 165.22 6 A PRO 31 33.84 174.59 6 A LYS 38 -103.17 -62.59 6 A HIS 44 153.75 162.22 6 A ARG 52 -88.07 46.08 7 A VAL 13 -35.72 135.03 7 A PRO 31 32.99 176.58 7 A LYS 38 -106.46 -63.87 7 A HIS 44 151.29 160.19 7 A ARG 52 -154.15 36.86 8 A ASN 17 -52.26 -80.27 8 A ARG 29 -110.25 58.43 8 A PRO 31 40.18 165.49 8 A THR 50 -96.15 -75.69 8 A GLU 51 -167.65 32.86 9 A VAL 13 -36.94 135.28 9 A CYS 18 -136.26 -35.63 9 A GLU 21 64.55 167.65 9 A PRO 31 36.47 169.80 9 A GLU 42 -145.97 -4.14 SOLUTION STRUCTURE OF NCP7 FROM HIV-1 1 N N 2 N N 2 N N metalc 2.252 A CYS 15 A SG CYS 4 1_555 A ZN 54 B ZN ZN 1_555 metalc 2.220 A CYS 18 A SG CYS 7 1_555 A ZN 54 B ZN ZN 1_555 metalc 2.004 A HIS 23 A NE2 HIS 12 1_555 A ZN 54 B ZN ZN 1_555 metalc 2.236 A CYS 28 A SG CYS 17 1_555 A ZN 54 B ZN ZN 1_555 metalc 2.248 A CYS 36 A SG CYS 25 1_555 A ZN 55 C ZN ZN 1_555 metalc 2.226 A CYS 39 A SG CYS 28 1_555 A ZN 55 C ZN ZN 1_555 metalc 2.026 A HIS 44 A NE2 HIS 33 1_555 A ZN 55 C ZN ZN 1_555 metalc 2.185 A CYS 49 A SG CYS 38 1_555 A ZN 55 C ZN ZN 1_555 VIRAL PROTEIN (12-53)NCp7, HIV-1, PROTEIN, Viral protein POL_HV1H2 UNP 1 388 P04585 IVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ 388 429 1ESK 12 53 P04585 A 1 1 42 1 ILE conflict ASN 12 1ESK A P04585 UNP 388 1 BINDING SITE FOR RESIDUE ZN A 54 A ZN 54 Software 4 BINDING SITE FOR RESIDUE ZN A 55 A ZN 55 Software 5 A CYS 15 A CYS 4 4 1_555 A CYS 18 A CYS 7 4 1_555 A HIS 23 A HIS 12 4 1_555 A CYS 28 A CYS 17 4 1_555 A CYS 36 A CYS 25 5 1_555 A CYS 39 A CYS 28 5 1_555 A HIS 44 A HIS 33 5 1_555 A CYS 49 A CYS 38 5 1_555 A GLU 51 A GLU 40 5 1_555 1 P 1