1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wecker, K. Morellet, N. Bouaziz, S. Roques, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing IX Eur.J.Biochem. EJBCAI 0262 0014-2956 269 3779 3788 10.1046/j.1432-1033.2002.03067.x 12153575 NMR structure of the HIV-1 regulatory protein Vpr in H2O/trifluoroethanol. Comparison with the Vpr N-terminal (1-51) and C-terminal (52-96) domains. 2002 10.2210/pdb1esx/pdb pdb_00001esx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11411.905 VPR PROTEIN 1 syn polymer VIRAL PROTEIN OF REGULATION no no MEQAPEDQGPQREPYNDWTLELLEELKNEAVRHFPRIWLHSLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCRHSR IGIIQQRRTRNGASKS MEQAPEDQGPQREPYNDWTLELLEELKNEAVRHFPRIWLHSLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCRHSR IGIIQQRRTRNGASKS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chem_comp_atom chem_comp_bond database_2 pdbx_nmr_software repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2001-04-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-05-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2000-04-11 REL This sequence has been obtained by solid phase synthesis. The sequence of this protein is naturally found in Human immunodeficiency virus type 1 (HIV-1). sample This structure was determined using standard 2D homonuclear techniques, 2D heteronuclear techniques and relaxation experiments structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy 20 1 2D NOESY DQF-COSY HSQC (15N, 13C) HSQC-NOESY (15N, 13C) HSQC-TOCSY(15N, 13C) 0 3.4 ambient 323 K 0 3.4 ambient 313 K The structure is based on a total of 1420 distance constraints simulated annealing, molecular dynamics, minimisations 20 fewest violations,lowest energy 1 mM Vpr 15N, 13C ; 10 mM DTT ; HMDS ; 70 % H2O ; 30 % TFE 70 % H20, 30 % TFE msi structure solution Discover 98.0 bruker collection XwinNMR 2.1 msi refinement Discover 98.0 bruker processing XwinNMR 2.1 600 Bruker DRX MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A GLN 3 n 3 GLN 3 A ALA 4 n 4 ALA 4 A PRO 5 n 5 PRO 5 A GLU 6 n 6 GLU 6 A ASP 7 n 7 ASP 7 A GLN 8 n 8 GLN 8 A GLY 9 n 9 GLY 9 A PRO 10 n 10 PRO 10 A GLN 11 n 11 GLN 11 A ARG 12 n 12 ARG 12 A GLU 13 n 13 GLU 13 A PRO 14 n 14 PRO 14 A TYR 15 n 15 TYR 15 A ASN 16 n 16 ASN 16 A ASP 17 n 17 ASP 17 A TRP 18 n 18 TRP 18 A THR 19 n 19 THR 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A LEU 23 n 23 LEU 23 A GLU 24 n 24 GLU 24 A GLU 25 n 25 GLU 25 A LEU 26 n 26 LEU 26 A LYS 27 n 27 LYS 27 A ASN 28 n 28 ASN 28 A GLU 29 n 29 GLU 29 A ALA 30 n 30 ALA 30 A VAL 31 n 31 VAL 31 A ARG 32 n 32 ARG 32 A HIS 33 n 33 HIS 33 A PHE 34 n 34 PHE 34 A PRO 35 n 35 PRO 35 A ARG 36 n 36 ARG 36 A ILE 37 n 37 ILE 37 A TRP 38 n 38 TRP 38 A LEU 39 n 39 LEU 39 A HIS 40 n 40 HIS 40 A SER 41 n 41 SER 41 A LEU 42 n 42 LEU 42 A GLY 43 n 43 GLY 43 A GLN 44 n 44 GLN 44 A HIS 45 n 45 HIS 45 A ILE 46 n 46 ILE 46 A TYR 47 n 47 TYR 47 A GLU 48 n 48 GLU 48 A THR 49 n 49 THR 49 A TYR 50 n 50 TYR 50 A GLY 51 n 51 GLY 51 A ASP 52 n 52 ASP 52 A THR 53 n 53 THR 53 A TRP 54 n 54 TRP 54 A THR 55 n 55 THR 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A LEU 60 n 60 LEU 60 A ILE 61 n 61 ILE 61 A ARG 62 n 62 ARG 62 A ILE 63 n 63 ILE 63 A LEU 64 n 64 LEU 64 A GLN 65 n 65 GLN 65 A GLN 66 n 66 GLN 66 A LEU 67 n 67 LEU 67 A LEU 68 n 68 LEU 68 A PHE 69 n 69 PHE 69 A ILE 70 n 70 ILE 70 A HIS 71 n 71 HIS 71 A PHE 72 n 72 PHE 72 A ARG 73 n 73 ARG 73 A ILE 74 n 74 ILE 74 A GLY 75 n 75 GLY 75 A CYS 76 n 76 CYS 76 A ARG 77 n 77 ARG 77 A HIS 78 n 78 HIS 78 A SER 79 n 79 SER 79 A ARG 80 n 80 ARG 80 A ILE 81 n 81 ILE 81 A GLY 82 n 82 GLY 82 A ILE 83 n 83 ILE 83 A ILE 84 n 84 ILE 84 A GLN 85 n 85 GLN 85 A GLN 86 n 86 GLN 86 A ARG 87 n 87 ARG 87 A ARG 88 n 88 ARG 88 A THR 89 n 89 THR 89 A ARG 90 n 90 ARG 90 A ASN 91 n 91 ASN 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A SER 94 n 94 SER 94 A LYS 95 n 95 LYS 95 A SER 96 n 96 SER 96 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A TYR 50 0.124 SIDE CHAIN 1 13.79 2.00 110.40 124.19 A A A CB CA C ARG ARG ARG 87 87 87 N 1 A A CD OE2 GLU GLU 2 2 0.111 0.011 1.252 1.363 N 1 A A CD OE2 GLU GLU 6 6 0.112 0.011 1.252 1.364 N 1 A A CD OE2 GLU GLU 13 13 0.112 0.011 1.252 1.364 N 1 A A CD OE2 GLU GLU 21 21 0.112 0.011 1.252 1.364 N 1 A A CD OE2 GLU GLU 24 24 0.112 0.011 1.252 1.364 N 1 A A CD OE2 GLU GLU 25 25 0.111 0.011 1.252 1.363 N 1 A A CD OE2 GLU GLU 29 29 0.112 0.011 1.252 1.364 N 1 A A CD OE2 GLU GLU 48 48 0.112 0.011 1.252 1.364 N 1 A A CD OE2 GLU GLU 58 58 0.112 0.011 1.252 1.364 N 1 A GLU 6 -161.34 -48.58 1 A GLN 8 -153.83 -54.44 1 A PRO 14 -64.80 36.79 1 A TYR 15 -143.41 -125.50 1 A ASN 16 55.95 -126.34 1 A ARG 36 -100.98 -68.28 1 A ILE 37 -2.12 97.70 1 A TRP 38 -147.37 -79.14 1 A GLU 48 -69.68 -73.74 1 A THR 55 -145.84 -57.15 1 A HIS 78 -91.11 54.09 1 A SER 79 -161.12 -58.05 1 A ILE 84 -106.82 42.19 1 A SER 94 -55.43 86.97 1 A LYS 95 -140.94 -63.96 1H, 15N AND 13C STRUCTURE OF THE HIV-1 REGULATORY PROTEIN VPR : COMPARISON WITH THE N-AND C-TERMINAL DOMAIN STRUCTURE, (1-51)VPR AND (52-96)VPR 1 N N A ASN 16 A ASN 16 HELX_P A HIS 33 A HIS 33 1 1 18 A TRP 38 A TRP 38 HELX_P A TYR 50 A TYR 50 1 2 13 A THR 55 A THR 55 HELX_P A ILE 81 A ILE 81 1 3 27 VIRAL PROTEIN helix, amphipatic, turn, Viral protein Q73369_9HIV1 UNP 1 1 Q73369 MEQAPEDQGPQREPYNDWTLELLEELKNEAVRHFPRIWLHSLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCRHSR IGIIQQRRTRNGASKS 1 96 1ESX 1 96 Q73369 A 1 1 96 1 P 1