1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Battiste, J.L.
Mao, H.
Rao, N.S.
Tan, R.
Muhandiram, D.R.
Kay, L.E.
Frankel, A.D.
Willamson, J.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
US
Science
SCIEAS
0038
0036-8075
273
1547
1551
8703216
Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex.
1996
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
6
375
Assignment and Modeling of the Rev Response Element RNA Bound to a Rev Peptide Using 13C-Heteronuclear NMR
1995
US
Biochemistry
BICHAW
0033
0006-2960
33
2741
Binding of an HIV Rev Peptide to Rev Responsive Element RNA Induces Formation of Purine-Purine Base Pairs
1994
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
73
1031
RNA Recognition by an Isolated Alpha Helix
1993
10.2210/pdb1etf/pdb
pdb_00001etf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
11039.639
REV RESPONSE ELEMENT RNA
1
syn
polymer
3004.411
REV PEPTIDE
1
man
polymer
no
no
GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC
GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC
A
polyribonucleotide
no
no
DTRQARRNRRRRWRERQRAAAAR
DTRQARRNRRRRWRERQRAAAAR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
11676
Human immunodeficiency virus 1
562
Escherichia coli
-1.791
1
19
A
41
A
79
-2.643
A_G41:C79_A
1
-5.151
1.032
1.218
-0.372
-1.375
1
19
A
42
A
78
-2.080
A_G42:C78_A
2
3.411
0.834
1.085
-0.356
-9.608
1
28
A
43
A
77
-6.003
A_U43:G77_A
3
-7.414
1.360
0.781
-0.452
-7.283
1
19
A
44
A
76
-2.305
A_C44:G76_A
4
2.409
-0.037
1.222
-0.239
13.685
1
20
A
45
A
75
-6.814
A_U45:A75_A
5
-2.839
-1.131
1.199
-0.480
21.125
1
19
A
46
A
74
-2.963
A_G46:C74_A
6
8.447
-0.426
-0.027
-0.033
6.967
8
A
47
A
73
-27.101
A_G47:A73_A
7
-31.058
-0.151
0.727
1.398
9.746
3
A
48
A
71
172.335
A_G48:G71_A
8
-5.752
-0.698
-1.591
-0.374
-10.856
1
19
A
49
A
70
-7.385
A_C49:G70_A
9
-16.495
0.365
1.336
-0.482
-1.988
1
19
A
50
A
69
-12.383
A_G50:C69_A
10
-14.285
0.656
0.909
-0.223
-10.521
1
19
A
51
A
67
-7.302
A_C51:G67_A
11
-13.511
-0.971
1.160
-0.297
-18.470
1
20
A
52
A
66
-2.468
A_A52:U66_A
12
-13.608
-0.209
0.263
-0.024
8.274
1
19
A
53
A
65
-7.025
A_G53:C65_A
13
5.125
0.706
0.594
-0.057
-2.526
1
19
A
54
A
64
11.297
A_C54:G64_A
14
15.499
0.070
1.145
-0.226
26.395
9
11
A
55
A
58
10.088
A_G55:A58_A
15
34.956
5.627
1.430
-4.562
4.191
28.268
A
A
41
42
-16.498
A
A
79
78
3.864
-7.945
0.364
-1.672
AA_G41G42:C78C79_AA
1
2.192
-4.552
27.063
-1.101
-0.105
3.657
31.359
A
A
42
43
11.134
A
A
78
77
4.138
5.934
-0.125
-1.518
AA_G42U43:G77C78_AA
2
7.007
-13.147
30.017
-4.169
1.839
2.167
26.349
A
A
43
44
28.533
A
A
77
76
3.372
12.453
0.074
-1.643
AA_U43C44:G76G77_AA
3
-3.839
8.796
22.951
-6.629
-1.095
2.457
22.625
A
A
44
45
10.805
A
A
76
75
2.852
4.215
-0.304
-1.904
AA_C44U45:A75G76_AA
4
-0.330
0.845
22.232
-6.109
0.676
1.792
34.253
A
A
45
46
30.733
A
A
75
74
3.011
17.310
-0.025
-1.671
AA_U45G46:C74A75_AA
5
-0.651
1.156
29.664
-4.992
-0.038
4.352
47.046
A
A
46
47
-29.823
A
A
74
73
4.379
-22.888
-1.384
-0.897
AA_G46G47:A73C74_AA
6
-2.280
2.970
41.321
1.576
1.465
4.187
-87.917
A
A
47
48
-15.447
A
A
73
71
4.035
21.251
-0.757
-1.823
AA_G47G48:G71A73_AA
7
-13.572
-9.865
-84.940
0.726
-0.920
3.726
125.689
A
A
48
49
-9.743
A
A
71
70
3.663
-17.312
0.189
-1.121
AA_G48C49:G70G71_AA
8
-11.057
6.222
124.730
-0.467
-0.210
3.382
34.497
A
A
49
50
-12.012
A
A
70
69
3.166
-7.064
-0.286
-1.631
AA_C49G50:C69G70_AA
9
3.553
-6.043
33.605
-1.638
1.042
1.805
33.240
A
A
50
51
39.030
A
A
69
67
3.637
20.669
0.774
-1.501
AA_G50C51:G67C69_AA
10
-4.801
9.066
25.734
-5.893
-2.112
4.006
39.287
A
A
51
52
2.806
A
A
67
66
4.006
1.884
0.756
-0.858
AA_C51A52:U66G67_AA
11
2.957
-4.403
39.137
-1.552
-0.693
2.891
31.950
A
A
52
53
-6.409
A
A
66
65
2.740
-3.519
-0.154
-1.516
AA_A52G53:C65U66_AA
12
-1.748
3.184
31.713
-2.203
0.006
0.874
31.725
A
A
53
54
50.698
A
A
65
64
3.829
24.226
0.408
-1.922
AA_G53C54:G64C65_AA
13
-5.953
12.458
19.756
-7.513
-1.728
3.880
46.997
A
A
54
55
-14.609
A
A
64
58
3.623
-11.356
-0.956
-1.047
AA_C54G55:A58G64_AA
14
-15.064
19.380
43.242
-0.188
-0.293
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-03-12
1
1
2008-03-03
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
ENSEMBLE OF 19 STRUCTURES
Y
BNL
1996-08-28
REL
REL
1
BIOSYM
refinement
INSIGHT/DISCOVER
G
41
n
1
G
41
A
G
42
n
2
G
42
A
U
43
n
3
U
43
A
C
44
n
4
C
44
A
U
45
n
5
U
45
A
G
46
n
6
G
46
A
G
47
n
7
G
47
A
G
48
n
8
G
48
A
C
49
n
9
C
49
A
G
50
n
10
G
50
A
C
51
n
11
C
51
A
A
52
n
12
A
52
A
G
53
n
13
G
53
A
C
54
n
14
C
54
A
G
55
n
15
G
55
A
C
56
n
16
C
56
A
A
57
n
17
A
57
A
A
58
n
18
A
58
A
G
64
n
19
G
64
A
C
65
n
20
C
65
A
U
66
n
21
U
66
A
G
67
n
22
G
67
A
A
68
n
23
A
68
A
C
69
n
24
C
69
A
G
70
n
25
G
70
A
G
71
n
26
G
71
A
U
72
n
27
U
72
A
A
73
n
28
A
73
A
C
74
n
29
C
74
A
A
75
n
30
A
75
A
G
76
n
31
G
76
A
G
77
n
32
G
77
A
C
78
n
33
C
78
A
C
79
n
34
C
79
A
ASP
33
n
1
ASP
33
B
THR
34
n
2
THR
34
B
ARG
35
n
3
ARG
35
B
GLN
36
n
4
GLN
36
B
ALA
37
n
5
ALA
37
B
ARG
38
n
6
ARG
38
B
ARG
39
n
7
ARG
39
B
ASN
40
n
8
ASN
40
B
ARG
41
n
9
ARG
41
B
ARG
42
n
10
ARG
42
B
ARG
43
n
11
ARG
43
B
ARG
44
n
12
ARG
44
B
TRP
45
n
13
TRP
45
B
ARG
46
n
14
ARG
46
B
GLU
47
n
15
GLU
47
B
ARG
48
n
16
ARG
48
B
GLN
49
n
17
GLN
49
B
ARG
50
n
18
ARG
50
B
ALA
51
n
19
ALA
51
B
ALA
52
n
20
ALA
52
B
ALA
53
n
21
ALA
53
B
ALA
54
n
22
ALA
54
B
ARG
55
n
23
ARG
55
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HO2'
H5'
G
C
50
51
1.16
1
A
A
HO2'
H5'
G
C
77
78
1.19
1
A
A
O2'
H5'
A
G
58
64
1.28
1
A
A
H3'
H2'
G
G
70
71
1.31
1
A
B
N7
HB3
G
GLN
47
36
1.33
1
A
A
HO2'
H8
C
A
56
57
1.33
1
A
A
HO2'
H5'
U
C
43
44
1.34
1
A
B
O4
HH21
U
ARG
45
44
1.38
1
B
B
O
H
GLN
ASN
36
40
1.46
1
B
B
O
H
ARG
ARG
38
42
1.48
1
A
B
N7
HD22
G
ASN
47
40
1.51
1
B
B
O
HB3
GLU
ARG
47
50
1.52
1
B
B
O
H
ARG
ARG
44
48
1.53
1
B
B
O
H
ALA
ARG
51
55
1.54
1
B
B
O
H
GLN
ALA
49
53
1.56
1
B
B
O
HG2
ARG
ARG
35
39
1.59
1
A
B
O4
NH2
U
ARG
45
44
1.71
1
A
B
O6
OD1
G
ASN
47
40
2.00
1
A
B
OP2
NH2
U
ARG
72
46
2.05
1
A
A
68
0.054
SIDE CHAIN
1
4.97
0.70
108.50
113.47
A
A
A
O4'
C1'
N1
C
C
C
56
56
56
N
1
18.38
2.60
111.60
129.98
B
B
B
CB
CG
CD
ARG
ARG
ARG
46
46
46
N
1
B
B
CD
OE2
GLU
GLU
47
47
0.113
0.011
1.252
1.365
N
1
B
B
C
OXT
ARG
ARG
55
55
0.135
0.019
1.229
1.364
N
REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
2
N
N
B
ARG
35
B
ARG
3
HELX_P
B
ALA
53
B
ALA
21
1
1
19
hydrog
WATSON-CRICK
A
G
41
A
N1
G
1
1_555
A
C
79
A
N3
C
34
1_555
hydrog
WATSON-CRICK
A
G
41
A
N2
G
1
1_555
A
C
79
A
O2
C
34
1_555
hydrog
WATSON-CRICK
A
G
41
A
O6
G
1
1_555
A
C
79
A
N4
C
34
1_555
hydrog
WATSON-CRICK
A
G
42
A
N1
G
2
1_555
A
C
78
A
N3
C
33
1_555
hydrog
WATSON-CRICK
A
G
42
A
N2
G
2
1_555
A
C
78
A
O2
C
33
1_555
hydrog
WATSON-CRICK
A
G
42
A
O6
G
2
1_555
A
C
78
A
N4
C
33
1_555
hydrog
TYPE_28_PAIR
A
U
43
A
N3
U
3
1_555
A
G
77
A
O6
G
32
1_555
hydrog
TYPE_28_PAIR
A
U
43
A
O2
U
3
1_555
A
G
77
A
N1
G
32
1_555
hydrog
WATSON-CRICK
A
C
44
A
N3
C
4
1_555
A
G
76
A
N1
G
31
1_555
hydrog
WATSON-CRICK
A
C
44
A
N4
C
4
1_555
A
G
76
A
O6
G
31
1_555
hydrog
WATSON-CRICK
A
C
44
A
O2
C
4
1_555
A
G
76
A
N2
G
31
1_555
hydrog
WATSON-CRICK
A
U
45
A
N3
U
5
1_555
A
A
75
A
N1
A
30
1_555
hydrog
WATSON-CRICK
A
U
45
A
O4
U
5
1_555
A
A
75
A
N6
A
30
1_555
hydrog
WATSON-CRICK
A
G
46
A
N1
G
6
1_555
A
C
74
A
N3
C
29
1_555
hydrog
WATSON-CRICK
A
G
46
A
N2
G
6
1_555
A
C
74
A
O2
C
29
1_555
hydrog
WATSON-CRICK
A
G
46
A
O6
G
6
1_555
A
C
74
A
N4
C
29
1_555
hydrog
TYPE_8_PAIR
A
G
47
A
N1
G
7
1_555
A
A
73
A
N1
A
28
1_555
hydrog
TYPE_8_PAIR
A
G
47
A
O6
G
7
1_555
A
A
73
A
N6
A
28
1_555
hydrog
TYPE_3_PAIR
A
G
48
A
N1
G
8
1_555
A
G
71
A
O6
G
26
1_555
hydrog
TYPE_3_PAIR
A
G
48
A
O6
G
8
1_555
A
G
71
A
N1
G
26
1_555
hydrog
WATSON-CRICK
A
C
49
A
N3
C
9
1_555
A
G
70
A
N1
G
25
1_555
hydrog
WATSON-CRICK
A
C
49
A
N4
C
9
1_555
A
G
70
A
O6
G
25
1_555
hydrog
WATSON-CRICK
A
C
49
A
O2
C
9
1_555
A
G
70
A
N2
G
25
1_555
hydrog
WATSON-CRICK
A
G
50
A
N1
G
10
1_555
A
C
69
A
N3
C
24
1_555
hydrog
WATSON-CRICK
A
G
50
A
N2
G
10
1_555
A
C
69
A
O2
C
24
1_555
hydrog
WATSON-CRICK
A
G
50
A
O6
G
10
1_555
A
C
69
A
N4
C
24
1_555
hydrog
WATSON-CRICK
A
C
51
A
N3
C
11
1_555
A
G
67
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
51
A
N4
C
11
1_555
A
G
67
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
51
A
O2
C
11
1_555
A
G
67
A
N2
G
22
1_555
hydrog
WATSON-CRICK
A
A
52
A
N1
A
12
1_555
A
U
66
A
N3
U
21
1_555
hydrog
WATSON-CRICK
A
A
52
A
N6
A
12
1_555
A
U
66
A
O4
U
21
1_555
hydrog
WATSON-CRICK
A
G
53
A
N1
G
13
1_555
A
C
65
A
N3
C
20
1_555
hydrog
WATSON-CRICK
A
G
53
A
N2
G
13
1_555
A
C
65
A
O2
C
20
1_555
hydrog
WATSON-CRICK
A
G
53
A
O6
G
13
1_555
A
C
65
A
N4
C
20
1_555
hydrog
WATSON-CRICK
A
C
54
A
N3
C
14
1_555
A
G
64
A
N1
G
19
1_555
hydrog
WATSON-CRICK
A
C
54
A
N4
C
14
1_555
A
G
64
A
O6
G
19
1_555
hydrog
WATSON-CRICK
A
C
54
A
O2
C
14
1_555
A
G
64
A
N2
G
19
1_555
hydrog
TYPE_11_PAIR
A
G
55
A
N2
G
15
1_555
A
A
58
A
N7
A
18
1_555
hydrog
TYPE_11_PAIR
A
G
55
A
N3
G
15
1_555
A
A
58
A
N6
A
18
1_555
Viral protein/RNA
COMPLEX (RNA-PEPTIDE), EXPORT REGULATOR, MRNA SPLICING, TRANSCRIPTION REGULATION, Viral protein-RNA COMPLEX
REV_HV1W2
UNP
2
P05866
1ETF
PDB
1
1ETF
7
29
1ETF
33
55
P05866
B
1
1
23
41
79
1ETF
41
79
1ETF
A
2
1
34
2
GLY
conflict
ASP
33
1ETF
B
P05866
UNP
7
1
2
GLN
conflict
ALA
51
1ETF
B
P05866
UNP
25
19
2
ILE
conflict
ALA
52
1ETF
B
P05866
UNP
26
20
2
ARG
conflict
ALA
53
1ETF
B
P05866
UNP
27
21
2
SER
conflict
ALA
54
1ETF
B
P05866
UNP
28
22
2
ILE
conflict
ARG
55
1ETF
B
P05866
UNP
29
23
1
P 1