1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Battiste, J.L. Mao, H. Rao, N.S. Tan, R. Muhandiram, D.R. Kay, L.E. Frankel, A.D. Willamson, J.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Science SCIEAS 0038 0036-8075 273 1547 1551 8703216 Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex. 1996 NE J.Biomol.NMR JBNME9 0800 0925-2738 6 375 Assignment and Modeling of the Rev Response Element RNA Bound to a Rev Peptide Using 13C-Heteronuclear NMR 1995 US Biochemistry BICHAW 0033 0006-2960 33 2741 Binding of an HIV Rev Peptide to Rev Responsive Element RNA Induces Formation of Purine-Purine Base Pairs 1994 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 73 1031 RNA Recognition by an Isolated Alpha Helix 1993 10.2210/pdb1etf/pdb pdb_00001etf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11039.639 REV RESPONSE ELEMENT RNA 1 syn polymer 3004.411 REV PEPTIDE 1 man polymer no no GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC A polyribonucleotide no no DTRQARRNRRRRWRERQRAAAAR DTRQARRNRRRRWRERQRAAAAR B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli -1.791 1 19 A 41 A 79 -2.643 A_G41:C79_A 1 -5.151 1.032 1.218 -0.372 -1.375 1 19 A 42 A 78 -2.080 A_G42:C78_A 2 3.411 0.834 1.085 -0.356 -9.608 1 28 A 43 A 77 -6.003 A_U43:G77_A 3 -7.414 1.360 0.781 -0.452 -7.283 1 19 A 44 A 76 -2.305 A_C44:G76_A 4 2.409 -0.037 1.222 -0.239 13.685 1 20 A 45 A 75 -6.814 A_U45:A75_A 5 -2.839 -1.131 1.199 -0.480 21.125 1 19 A 46 A 74 -2.963 A_G46:C74_A 6 8.447 -0.426 -0.027 -0.033 6.967 8 A 47 A 73 -27.101 A_G47:A73_A 7 -31.058 -0.151 0.727 1.398 9.746 3 A 48 A 71 172.335 A_G48:G71_A 8 -5.752 -0.698 -1.591 -0.374 -10.856 1 19 A 49 A 70 -7.385 A_C49:G70_A 9 -16.495 0.365 1.336 -0.482 -1.988 1 19 A 50 A 69 -12.383 A_G50:C69_A 10 -14.285 0.656 0.909 -0.223 -10.521 1 19 A 51 A 67 -7.302 A_C51:G67_A 11 -13.511 -0.971 1.160 -0.297 -18.470 1 20 A 52 A 66 -2.468 A_A52:U66_A 12 -13.608 -0.209 0.263 -0.024 8.274 1 19 A 53 A 65 -7.025 A_G53:C65_A 13 5.125 0.706 0.594 -0.057 -2.526 1 19 A 54 A 64 11.297 A_C54:G64_A 14 15.499 0.070 1.145 -0.226 26.395 9 11 A 55 A 58 10.088 A_G55:A58_A 15 34.956 5.627 1.430 -4.562 4.191 28.268 A A 41 42 -16.498 A A 79 78 3.864 -7.945 0.364 -1.672 AA_G41G42:C78C79_AA 1 2.192 -4.552 27.063 -1.101 -0.105 3.657 31.359 A A 42 43 11.134 A A 78 77 4.138 5.934 -0.125 -1.518 AA_G42U43:G77C78_AA 2 7.007 -13.147 30.017 -4.169 1.839 2.167 26.349 A A 43 44 28.533 A A 77 76 3.372 12.453 0.074 -1.643 AA_U43C44:G76G77_AA 3 -3.839 8.796 22.951 -6.629 -1.095 2.457 22.625 A A 44 45 10.805 A A 76 75 2.852 4.215 -0.304 -1.904 AA_C44U45:A75G76_AA 4 -0.330 0.845 22.232 -6.109 0.676 1.792 34.253 A A 45 46 30.733 A A 75 74 3.011 17.310 -0.025 -1.671 AA_U45G46:C74A75_AA 5 -0.651 1.156 29.664 -4.992 -0.038 4.352 47.046 A A 46 47 -29.823 A A 74 73 4.379 -22.888 -1.384 -0.897 AA_G46G47:A73C74_AA 6 -2.280 2.970 41.321 1.576 1.465 4.187 -87.917 A A 47 48 -15.447 A A 73 71 4.035 21.251 -0.757 -1.823 AA_G47G48:G71A73_AA 7 -13.572 -9.865 -84.940 0.726 -0.920 3.726 125.689 A A 48 49 -9.743 A A 71 70 3.663 -17.312 0.189 -1.121 AA_G48C49:G70G71_AA 8 -11.057 6.222 124.730 -0.467 -0.210 3.382 34.497 A A 49 50 -12.012 A A 70 69 3.166 -7.064 -0.286 -1.631 AA_C49G50:C69G70_AA 9 3.553 -6.043 33.605 -1.638 1.042 1.805 33.240 A A 50 51 39.030 A A 69 67 3.637 20.669 0.774 -1.501 AA_G50C51:G67C69_AA 10 -4.801 9.066 25.734 -5.893 -2.112 4.006 39.287 A A 51 52 2.806 A A 67 66 4.006 1.884 0.756 -0.858 AA_C51A52:U66G67_AA 11 2.957 -4.403 39.137 -1.552 -0.693 2.891 31.950 A A 52 53 -6.409 A A 66 65 2.740 -3.519 -0.154 -1.516 AA_A52G53:C65U66_AA 12 -1.748 3.184 31.713 -2.203 0.006 0.874 31.725 A A 53 54 50.698 A A 65 64 3.829 24.226 0.408 -1.922 AA_G53C54:G64C65_AA 13 -5.953 12.458 19.756 -7.513 -1.728 3.880 46.997 A A 54 55 -14.609 A A 64 58 3.623 -11.356 -0.956 -1.047 AA_C54G55:A58G64_AA 14 -15.064 19.380 43.242 -0.188 -0.293 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1997-03-12 1 1 2008-03-03 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details ENSEMBLE OF 19 STRUCTURES Y BNL 1996-08-28 REL REL 1 BIOSYM refinement INSIGHT/DISCOVER G 41 n 1 G 41 A G 42 n 2 G 42 A U 43 n 3 U 43 A C 44 n 4 C 44 A U 45 n 5 U 45 A G 46 n 6 G 46 A G 47 n 7 G 47 A G 48 n 8 G 48 A C 49 n 9 C 49 A G 50 n 10 G 50 A C 51 n 11 C 51 A A 52 n 12 A 52 A G 53 n 13 G 53 A C 54 n 14 C 54 A G 55 n 15 G 55 A C 56 n 16 C 56 A A 57 n 17 A 57 A A 58 n 18 A 58 A G 64 n 19 G 64 A C 65 n 20 C 65 A U 66 n 21 U 66 A G 67 n 22 G 67 A A 68 n 23 A 68 A C 69 n 24 C 69 A G 70 n 25 G 70 A G 71 n 26 G 71 A U 72 n 27 U 72 A A 73 n 28 A 73 A C 74 n 29 C 74 A A 75 n 30 A 75 A G 76 n 31 G 76 A G 77 n 32 G 77 A C 78 n 33 C 78 A C 79 n 34 C 79 A ASP 33 n 1 ASP 33 B THR 34 n 2 THR 34 B ARG 35 n 3 ARG 35 B GLN 36 n 4 GLN 36 B ALA 37 n 5 ALA 37 B ARG 38 n 6 ARG 38 B ARG 39 n 7 ARG 39 B ASN 40 n 8 ASN 40 B ARG 41 n 9 ARG 41 B ARG 42 n 10 ARG 42 B ARG 43 n 11 ARG 43 B ARG 44 n 12 ARG 44 B TRP 45 n 13 TRP 45 B ARG 46 n 14 ARG 46 B GLU 47 n 15 GLU 47 B ARG 48 n 16 ARG 48 B GLN 49 n 17 GLN 49 B ARG 50 n 18 ARG 50 B ALA 51 n 19 ALA 51 B ALA 52 n 20 ALA 52 B ALA 53 n 21 ALA 53 B ALA 54 n 22 ALA 54 B ARG 55 n 23 ARG 55 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HO2' H5' G C 50 51 1.16 1 A A HO2' H5' G C 77 78 1.19 1 A A O2' H5' A G 58 64 1.28 1 A A H3' H2' G G 70 71 1.31 1 A B N7 HB3 G GLN 47 36 1.33 1 A A HO2' H8 C A 56 57 1.33 1 A A HO2' H5' U C 43 44 1.34 1 A B O4 HH21 U ARG 45 44 1.38 1 B B O H GLN ASN 36 40 1.46 1 B B O H ARG ARG 38 42 1.48 1 A B N7 HD22 G ASN 47 40 1.51 1 B B O HB3 GLU ARG 47 50 1.52 1 B B O H ARG ARG 44 48 1.53 1 B B O H ALA ARG 51 55 1.54 1 B B O H GLN ALA 49 53 1.56 1 B B O HG2 ARG ARG 35 39 1.59 1 A B O4 NH2 U ARG 45 44 1.71 1 A B O6 OD1 G ASN 47 40 2.00 1 A B OP2 NH2 U ARG 72 46 2.05 1 A A 68 0.054 SIDE CHAIN 1 4.97 0.70 108.50 113.47 A A A O4' C1' N1 C C C 56 56 56 N 1 18.38 2.60 111.60 129.98 B B B CB CG CD ARG ARG ARG 46 46 46 N 1 B B CD OE2 GLU GLU 47 47 0.113 0.011 1.252 1.365 N 1 B B C OXT ARG ARG 55 55 0.135 0.019 1.229 1.364 N REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N B ARG 35 B ARG 3 HELX_P B ALA 53 B ALA 21 1 1 19 hydrog WATSON-CRICK A G 41 A N1 G 1 1_555 A C 79 A N3 C 34 1_555 hydrog WATSON-CRICK A G 41 A N2 G 1 1_555 A C 79 A O2 C 34 1_555 hydrog WATSON-CRICK A G 41 A O6 G 1 1_555 A C 79 A N4 C 34 1_555 hydrog WATSON-CRICK A G 42 A N1 G 2 1_555 A C 78 A N3 C 33 1_555 hydrog WATSON-CRICK A G 42 A N2 G 2 1_555 A C 78 A O2 C 33 1_555 hydrog WATSON-CRICK A G 42 A O6 G 2 1_555 A C 78 A N4 C 33 1_555 hydrog TYPE_28_PAIR A U 43 A N3 U 3 1_555 A G 77 A O6 G 32 1_555 hydrog TYPE_28_PAIR A U 43 A O2 U 3 1_555 A G 77 A N1 G 32 1_555 hydrog WATSON-CRICK A C 44 A N3 C 4 1_555 A G 76 A N1 G 31 1_555 hydrog WATSON-CRICK A C 44 A N4 C 4 1_555 A G 76 A O6 G 31 1_555 hydrog WATSON-CRICK A C 44 A O2 C 4 1_555 A G 76 A N2 G 31 1_555 hydrog WATSON-CRICK A U 45 A N3 U 5 1_555 A A 75 A N1 A 30 1_555 hydrog WATSON-CRICK A U 45 A O4 U 5 1_555 A A 75 A N6 A 30 1_555 hydrog WATSON-CRICK A G 46 A N1 G 6 1_555 A C 74 A N3 C 29 1_555 hydrog WATSON-CRICK A G 46 A N2 G 6 1_555 A C 74 A O2 C 29 1_555 hydrog WATSON-CRICK A G 46 A O6 G 6 1_555 A C 74 A N4 C 29 1_555 hydrog TYPE_8_PAIR A G 47 A N1 G 7 1_555 A A 73 A N1 A 28 1_555 hydrog TYPE_8_PAIR A G 47 A O6 G 7 1_555 A A 73 A N6 A 28 1_555 hydrog TYPE_3_PAIR A G 48 A N1 G 8 1_555 A G 71 A O6 G 26 1_555 hydrog TYPE_3_PAIR A G 48 A O6 G 8 1_555 A G 71 A N1 G 26 1_555 hydrog WATSON-CRICK A C 49 A N3 C 9 1_555 A G 70 A N1 G 25 1_555 hydrog WATSON-CRICK A C 49 A N4 C 9 1_555 A G 70 A O6 G 25 1_555 hydrog WATSON-CRICK A C 49 A O2 C 9 1_555 A G 70 A N2 G 25 1_555 hydrog WATSON-CRICK A G 50 A N1 G 10 1_555 A C 69 A N3 C 24 1_555 hydrog WATSON-CRICK A G 50 A N2 G 10 1_555 A C 69 A O2 C 24 1_555 hydrog WATSON-CRICK A G 50 A O6 G 10 1_555 A C 69 A N4 C 24 1_555 hydrog WATSON-CRICK A C 51 A N3 C 11 1_555 A G 67 A N1 G 22 1_555 hydrog WATSON-CRICK A C 51 A N4 C 11 1_555 A G 67 A O6 G 22 1_555 hydrog WATSON-CRICK A C 51 A O2 C 11 1_555 A G 67 A N2 G 22 1_555 hydrog WATSON-CRICK A A 52 A N1 A 12 1_555 A U 66 A N3 U 21 1_555 hydrog WATSON-CRICK A A 52 A N6 A 12 1_555 A U 66 A O4 U 21 1_555 hydrog WATSON-CRICK A G 53 A N1 G 13 1_555 A C 65 A N3 C 20 1_555 hydrog WATSON-CRICK A G 53 A N2 G 13 1_555 A C 65 A O2 C 20 1_555 hydrog WATSON-CRICK A G 53 A O6 G 13 1_555 A C 65 A N4 C 20 1_555 hydrog WATSON-CRICK A C 54 A N3 C 14 1_555 A G 64 A N1 G 19 1_555 hydrog WATSON-CRICK A C 54 A N4 C 14 1_555 A G 64 A O6 G 19 1_555 hydrog WATSON-CRICK A C 54 A O2 C 14 1_555 A G 64 A N2 G 19 1_555 hydrog TYPE_11_PAIR A G 55 A N2 G 15 1_555 A A 58 A N7 A 18 1_555 hydrog TYPE_11_PAIR A G 55 A N3 G 15 1_555 A A 58 A N6 A 18 1_555 Viral protein/RNA COMPLEX (RNA-PEPTIDE), EXPORT REGULATOR, MRNA SPLICING, TRANSCRIPTION REGULATION, Viral protein-RNA COMPLEX REV_HV1W2 UNP 2 P05866 1ETF PDB 1 1ETF 7 29 1ETF 33 55 P05866 B 1 1 23 41 79 1ETF 41 79 1ETF A 2 1 34 2 GLY conflict ASP 33 1ETF B P05866 UNP 7 1 2 GLN conflict ALA 51 1ETF B P05866 UNP 25 19 2 ILE conflict ALA 52 1ETF B P05866 UNP 26 20 2 ARG conflict ALA 53 1ETF B P05866 UNP 27 21 2 SER conflict ALA 54 1ETF B P05866 UNP 28 22 2 ILE conflict ARG 55 1ETF B P05866 UNP 29 23 1 P 1