0.009988 0.005767 0.000000 0.000000 0.011534 0.000000 0.000000 0.000000 0.025155 0.00000 0.00000 0.00000 Pletnev, V.Z. Zamolodchikova, T.S. Pangborn, W.A. Duax, W.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 100.117 100.117 39.753 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 41 8 16 10.1002/1097-0134(20001001)41:1<8::AID-PROT30>3.3.CO;2-U 10944388 Crystal structure of bovine duodenase, a serine protease, with dual trypsin and chymotrypsin-like specificities. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 IMAGE PLATE 1997-08-04 RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 25156.906 DUODENASE 3.4.21.- 1 nat polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 69 nat water no no IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSINVTLGAHNIMERERTQQVIPVRRPIPHPDY NDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY IPFTQICAGDPSKRKNSFSGDSGGPLVCNGVAQGIVSYGRNDGTTPDVYTRISSFLSWIHSTMRRYK IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSINVTLGAHNIMERERTQQVIPVRRPIPHPDY NDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY IPFTQICAGDPSKRKNSFSGDSGGPLVCNGVAQGIVSYGRNDGTTPDVYTRISSFLSWIHSTMRRYK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 BRUNNER'S GLAND Bos taurus 1 2.28 46.17 VAPOR DIFFUSION, HANGING DROP 6.7 PEG 3350, K/Na phosphate, NaN3, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 diffrn_source chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Atomic model Data collection Data collection Database references Derived calculations Structure summary 1 0 2001-04-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2011-11-16 1 4 2018-04-04 1 5 2020-07-29 _diffrn_source.type _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_ref_seq_dif.details DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y RCSB 2000-04-14 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose PO4 PHOSPHATE ION HOH water NAG 500 2 NAG NAG 500 A PO4 600 3 PO4 PO4 600 A WAT 300 4 HOH HOH 300 A WAT 301 4 HOH HOH 301 A WAT 302 4 HOH HOH 302 A WAT 303 4 HOH HOH 303 A WAT 304 4 HOH HOH 304 A WAT 305 4 HOH HOH 305 A WAT 306 4 HOH HOH 306 A WAT 307 4 HOH HOH 307 A WAT 308 4 HOH HOH 308 A WAT 309 4 HOH HOH 309 A WAT 310 4 HOH HOH 310 A WAT 311 4 HOH HOH 311 A WAT 312 4 HOH HOH 312 A WAT 313 4 HOH HOH 313 A WAT 314 4 HOH HOH 314 A WAT 315 4 HOH HOH 315 A WAT 316 4 HOH HOH 316 A WAT 317 4 HOH HOH 317 A WAT 318 4 HOH HOH 318 A WAT 319 4 HOH HOH 319 A WAT 320 4 HOH HOH 320 A WAT 321 4 HOH HOH 321 A WAT 322 4 HOH HOH 322 A WAT 323 4 HOH HOH 323 A WAT 324 4 HOH HOH 324 A WAT 325 4 HOH HOH 325 A WAT 326 4 HOH HOH 326 A WAT 327 4 HOH HOH 327 A WAT 328 4 HOH HOH 328 A WAT 329 4 HOH HOH 329 A WAT 330 4 HOH HOH 330 A WAT 331 4 HOH HOH 331 A WAT 332 4 HOH HOH 332 A WAT 333 4 HOH HOH 333 A WAT 334 4 HOH HOH 334 A WAT 335 4 HOH HOH 335 A WAT 336 4 HOH HOH 336 A WAT 337 4 HOH HOH 337 A WAT 338 4 HOH HOH 338 A WAT 339 4 HOH HOH 339 A WAT 340 4 HOH HOH 340 A WAT 341 4 HOH HOH 341 A WAT 342 4 HOH HOH 342 A WAT 343 4 HOH HOH 343 A WAT 344 4 HOH HOH 344 A WAT 345 4 HOH HOH 345 A WAT 346 4 HOH HOH 346 A WAT 347 4 HOH HOH 347 A WAT 348 4 HOH HOH 348 A WAT 349 4 HOH HOH 349 A WAT 350 4 HOH HOH 350 A WAT 351 4 HOH HOH 351 A WAT 352 4 HOH HOH 352 A WAT 353 4 HOH HOH 353 A WAT 354 4 HOH HOH 354 A WAT 355 4 HOH HOH 355 A WAT 356 4 HOH HOH 356 A WAT 357 4 HOH HOH 357 A WAT 358 4 HOH HOH 358 A WAT 359 4 HOH HOH 359 A WAT 360 4 HOH HOH 360 A WAT 361 4 HOH HOH 361 A WAT 362 4 HOH HOH 362 A WAT 363 4 HOH HOH 363 A WAT 364 4 HOH HOH 364 A WAT 365 4 HOH HOH 365 A WAT 366 4 HOH HOH 366 A WAT 367 4 HOH HOH 367 A WAT 368 4 HOH HOH 368 A ILE 16 n 1 ILE 16 A ILE 17 n 2 ILE 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A HIS 20 n 5 HIS 20 A GLU 21 n 6 GLU 21 A ALA 22 n 7 ALA 22 A LYS 23 n 8 LYS 23 A PRO 24 n 9 PRO 24 A HIS 25 n 10 HIS 25 A SER 26 n 11 SER 26 A ARG 27 n 12 ARG 27 A PRO 28 n 13 PRO 28 A TYR 29 n 14 TYR 29 A MET 30 n 15 MET 30 A ALA 31 n 16 ALA 31 A PHE 32 n 17 PHE 32 A LEU 33 n 18 LEU 33 A LEU 34 n 19 LEU 34 A PHE 35 n 20 PHE 35 A LYS 36 n 21 LYS 36 A THR 36 n 22 A THR 36 A SER 36 n 23 B SER 36 A GLY 36 n 24 C GLY 36 A LYS 37 n 25 LYS 37 A SER 38 n 26 SER 38 A HIS 40 n 27 HIS 40 A ILE 41 n 28 ILE 41 A CYS 42 n 29 CYS 42 A GLY 43 n 30 GLY 43 A GLY 44 n 31 GLY 44 A PHE 45 n 32 PHE 45 A LEU 46 n 33 LEU 46 A VAL 47 n 34 VAL 47 A ARG 48 n 35 ARG 48 A GLU 49 n 36 GLU 49 A ASP 50 n 37 ASP 50 A PHE 51 n 38 PHE 51 A VAL 52 n 39 VAL 52 A LEU 53 n 40 LEU 53 A THR 54 n 41 THR 54 A ALA 55 n 42 ALA 55 A ALA 56 n 43 ALA 56 A HIS 57 n 44 HIS 57 A CYS 58 n 45 CYS 58 A LEU 60 n 46 LEU 60 A GLY 61 n 47 GLY 61 A SER 62 n 48 SER 62 A SER 63 n 49 SER 63 A ILE 64 n 50 ILE 64 A ASN 65 n 51 ASN 65 A VAL 66 n 52 VAL 66 A THR 67 n 53 THR 67 A LEU 68 n 54 LEU 68 A GLY 69 n 55 GLY 69 A ALA 70 n 56 ALA 70 A HIS 71 n 57 HIS 71 A ASN 72 n 58 ASN 72 A ILE 73 n 59 ILE 73 A MET 74 n 60 MET 74 A GLU 75 n 61 GLU 75 A ARG 76 n 62 ARG 76 A GLU 77 n 63 GLU 77 A ARG 78 n 64 ARG 78 A THR 79 n 65 THR 79 A GLN 80 n 66 GLN 80 A GLN 81 n 67 GLN 81 A VAL 82 n 68 VAL 82 A ILE 83 n 69 ILE 83 A PRO 84 n 70 PRO 84 A VAL 85 n 71 VAL 85 A ARG 86 n 72 ARG 86 A ARG 87 n 73 ARG 87 A PRO 88 n 74 PRO 88 A ILE 89 n 75 ILE 89 A PRO 90 n 76 PRO 90 A HIS 91 n 77 HIS 91 A PRO 92 n 78 PRO 92 A ASP 93 n 79 ASP 93 A TYR 94 n 80 TYR 94 A ASN 95 n 81 ASN 95 A ASP 96 n 82 ASP 96 A GLU 97 n 83 GLU 97 A THR 98 n 84 THR 98 A LEU 99 n 85 LEU 99 A ALA 100 n 86 ALA 100 A ASN 101 n 87 ASN 101 A ASP 102 n 88 ASP 102 A ILE 103 n 89 ILE 103 A MET 104 n 90 MET 104 A LEU 105 n 91 LEU 105 A LEU 106 n 92 LEU 106 A LYS 107 n 93 LYS 107 A LEU 108 n 94 LEU 108 A THR 109 n 95 THR 109 A ARG 110 n 96 ARG 110 A LYS 111 n 97 LYS 111 A ALA 112 n 98 ALA 112 A ASP 113 n 99 ASP 113 A ILE 114 n 100 ILE 114 A THR 115 n 101 THR 115 A ASP 116 n 102 ASP 116 A LYS 117 n 103 LYS 117 A VAL 118 n 104 VAL 118 A SER 119 n 105 SER 119 A PRO 120 n 106 PRO 120 A ILE 121 n 107 ILE 121 A ASN 122 n 108 ASN 122 A LEU 123 n 109 LEU 123 A PRO 124 n 110 PRO 124 A ARG 125 n 111 ARG 125 A SER 126 n 112 SER 126 A LEU 127 n 113 LEU 127 A ALA 128 n 114 ALA 128 A GLU 129 n 115 GLU 129 A VAL 130 n 116 VAL 130 A LYS 131 n 117 LYS 131 A PRO 132 n 118 PRO 132 A GLY 133 n 119 GLY 133 A MET 134 n 120 MET 134 A MET 135 n 121 MET 135 A CYS 136 n 122 CYS 136 A SER 137 n 123 SER 137 A VAL 138 n 124 VAL 138 A ALA 139 n 125 ALA 139 A GLY 140 n 126 GLY 140 A TRP 141 n 127 TRP 141 A GLY 142 n 128 GLY 142 A ARG 143 n 129 ARG 143 A LEU 144 n 130 LEU 144 A GLY 145 n 131 GLY 145 A VAL 146 n 132 VAL 146 A ASN 147 n 133 ASN 147 A MET 148 n 134 MET 148 A PRO 150 n 135 PRO 150 A SER 151 n 136 SER 151 A THR 152 n 137 THR 152 A ASP 153 n 138 ASP 153 A LYS 154 n 139 LYS 154 A LEU 155 n 140 LEU 155 A GLN 156 n 141 GLN 156 A GLU 157 n 142 GLU 157 A VAL 158 n 143 VAL 158 A ASP 159 n 144 ASP 159 A LEU 160 n 145 LEU 160 A GLU 161 n 146 GLU 161 A VAL 162 n 147 VAL 162 A GLN 163 n 148 GLN 163 A SER 164 n 149 SER 164 A GLU 165 n 150 GLU 165 A GLU 166 n 151 GLU 166 A LYS 167 n 152 LYS 167 A CYS 168 n 153 CYS 168 A ILE 169 n 154 ILE 169 A ALA 170 n 155 ALA 170 A ARG 171 n 156 ARG 171 A PHE 172 n 157 PHE 172 A LYS 173 n 158 LYS 173 A ASN 174 n 159 ASN 174 A TYR 175 n 160 TYR 175 A ILE 176 n 161 ILE 176 A PRO 177 n 162 PRO 177 A PHE 178 n 163 PHE 178 A THR 179 n 164 THR 179 A GLN 180 n 165 GLN 180 A ILE 181 n 166 ILE 181 A CYS 182 n 167 CYS 182 A ALA 183 n 168 ALA 183 A GLY 184 n 169 GLY 184 A ASP 184 n 170 A ASP 184 A PRO 184 n 171 B PRO 184 A SER 185 n 172 SER 185 A LYS 186 n 173 LYS 186 A ARG 187 n 174 ARG 187 A LYS 188 n 175 LYS 188 A ASN 189 n 176 ASN 189 A SER 190 n 177 SER 190 A PHE 191 n 178 PHE 191 A SER 192 n 179 SER 192 A GLY 193 n 180 GLY 193 A ASP 194 n 181 ASP 194 A SER 195 n 182 SER 195 A GLY 196 n 183 GLY 196 A GLY 197 n 184 GLY 197 A PRO 198 n 185 PRO 198 A LEU 199 n 186 LEU 199 A VAL 200 n 187 VAL 200 A CYS 201 n 188 CYS 201 A ASN 202 n 189 ASN 202 A GLY 207 n 190 GLY 207 A VAL 208 n 191 VAL 208 A ALA 209 n 192 ALA 209 A GLN 210 n 193 GLN 210 A GLY 211 n 194 GLY 211 A ILE 212 n 195 ILE 212 A VAL 213 n 196 VAL 213 A SER 214 n 197 SER 214 A TYR 215 n 198 TYR 215 A GLY 216 n 199 GLY 216 A ARG 217 n 200 ARG 217 A ASN 218 n 201 ASN 218 A ASP 219 n 202 ASP 219 A GLY 220 n 203 GLY 220 A THR 223 n 204 THR 223 A THR 224 n 205 THR 224 A PRO 225 n 206 PRO 225 A ASP 226 n 207 ASP 226 A VAL 227 n 208 VAL 227 A TYR 228 n 209 TYR 228 A THR 229 n 210 THR 229 A ARG 230 n 211 ARG 230 A ILE 231 n 212 ILE 231 A SER 232 n 213 SER 232 A SER 233 n 214 SER 233 A PHE 234 n 215 PHE 234 A LEU 235 n 216 LEU 235 A SER 236 n 217 SER 236 A TRP 237 n 218 TRP 237 A ILE 238 n 219 ILE 238 A HIS 239 n 220 HIS 239 A SER 240 n 221 SER 240 A THR 241 n 222 THR 241 A MET 242 n 223 MET 242 A ARG 243 n 224 ARG 243 A n 225 244 A n 226 245 A n 227 246 A author_defined_assembly 1 monomeric A ASN 65 GLYCOSYLATION SITE A ASN 51 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O HIS 20 A O HIS 5 A N GLU 157 A N GLU 142 A O GLY 140 A O GLY 126 A N GLN 156 A N GLN 141 A N GLN 163 A N GLN 148 A O CYS 182 A O CYS 167 A O ALA 183 A O ALA 168 A N ASP 226 A N ASP 207 A N THR 229 A N THR 210 A O ILE 212 A O ILE 195 A O GLY 211 A O GLY 194 A N LEU 199 A N LEU 186 A N VAL 200 A N VAL 187 A O SER 137 A O SER 123 1 A HOH 368 D HOH 1 A ARG 244 A ARG 225 1 Y 1 A TYR 245 A TYR 226 1 Y 1 A LYS 246 A LYS 227 1 Y 1 A ARG 217 0.151 SIDE CHAIN 1 3.69 0.50 120.30 123.99 A A A NE CZ NH2 ARG ARG ARG 217 217 217 N 1 A CYS 58 -97.40 34.69 1 A HIS 71 -124.66 -58.12 1 A GLU 97 -92.95 -64.08 1 A THR 115 -133.39 -158.18 1 A ASN 174 -111.11 51.57 1 A ARG 187 -81.70 41.91 1 A SER 214 -116.58 -74.20 Cross-validated maximum likelihood simulated annealing refinement (CNS package) 0.223 0.179 2.4 99.0 928 9001 8780 97.5 Random 1 0.0 Engh & Huber 2.4 99.0 69 1816 19 0 1728 0.006 1.40 24.67 0.83 2.4 99.0 1EUF 9001 8780 0.0 0.058 1 14.3 9.7 96.3 0.247 2.40 2.51 1150 1 3.5 97.3 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS DUODENASE (E.C.3.4.21.-) BOVINE DUODENASE(NEW SERINE PROTEASE), CRYSTAL STRUCTURE 1 N N 2 N N 3 N N 4 N N A ALA 55 A ALA 42 HELX_P A LEU 60 A LEU 46 5 1 5 A GLU 165 A GLU 150 HELX_P A ALA 170 A ALA 155 1 2 6 A PHE 234 A PHE 215 HELX_P A MET 242 A MET 223 1 3 9 disulf 2.030 A CYS 42 A SG CYS 29 1_555 A CYS 58 A SG CYS 45 1_555 disulf 2.028 A CYS 136 A SG CYS 122 1_555 A CYS 201 A SG CYS 188 1_555 disulf 2.034 A CYS 168 A SG CYS 153 1_555 A CYS 182 A SG CYS 167 1_555 covale 1.448 one N-Glycosylation A ASN 65 A ND2 ASN 51 1_555 A NAG 500 B C1 NAG 1_555 HYDROLASE bovine duodenase, serine protease, dual specificity, HYDROLASE A THR 224 A THR 205 1 A PRO 225 A PRO 206 0.07 DDN1_BOVIN UNP 1 1 P80219 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSINVTLGAHNIMERERTQQVIPVRRPIPHPDYN DETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYI PFTQICAGDPSKRRNSFSGDSGGPLVCNGVAQGIVSYGKNDGTTPDVYTRISSFLPWIKRVMYLFK 1 226 1EUF 16 243 P80219 A 1 1 224 1 insertion SER 63 1EUF A P80219 UNP 49 1 ARG conflict LYS 188 1EUF A P80219 UNP 174 175 1 LYS conflict ARG 217 1EUF A P80219 UNP 199 200 1 PRO conflict SER 236 1EUF A P80219 UNP 216 217 1 LYS conflict HIS 239 1EUF A P80219 UNP 219 220 1 ARG conflict SER 240 1EUF A P80219 UNP 220 221 1 VAL conflict THR 241 1EUF A P80219 UNP 221 222 1 TYR conflict ARG 243 1EUF A P80219 UNP 223 224 1 LEU conflict ARG 244 1EUF A P80219 UNP 224 225 1 PHE conflict TYR 245 1EUF A P80219 UNP 225 226 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A HIS 20 A HIS 5 A GLU 21 A GLU 6 A GLN 156 A GLN 141 A GLN 163 A GLN 148 A MET 135 A MET 121 A GLY 140 A GLY 126 A GLN 156 A GLN 141 A GLN 163 A GLN 148 A GLN 180 A GLN 165 A ALA 183 A ALA 168 A ASP 226 A ASP 207 A ARG 230 A ARG 211 A VAL 208 A VAL 191 A TYR 215 A TYR 198 A PRO 198 A PRO 185 A CYS 201 A CYS 188 A MET 135 A MET 121 A GLY 140 A GLY 126 172 P 64