0.00795 0.00000 0.00000 0.00000 0.01881 0.00000 0.00000 0.00000 0.01843 0.00000 0.00000 0.00000 Mossessova, E. Lima, C.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 125.774 53.167 54.262 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Mol.Cell MOCEFL 2168 1097-2765 5 865 876 10.1016/S1097-2765(00)80326-3 10882122 Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast. 2000 UK Nature NATUAS 0006 0028-0836 398 246 251 10.1038/18457 A New Protease Required for Cell-cycle Progression in Yeast. 1999 10.2210/pdb1euv/pdb pdb_00001euv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100. 1 CCD 1999-10-21 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9791 1.0 X4A NSLS 0.9791 SYNCHROTRON NSLS BEAMLINE X4A 25650.301 ULP1 PROTEASE C-TERMINAL PROTEASE DOMAIN 1 man polymer 9961.278 UBITQUTIN-LIKE PROTEIN SMT3 SMT3 RESIDUES 13-98 1 man polymer 18.015 water 432 nat water no no GSLVPELNEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLS ERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTI GEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK GSLVPELNEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLS ERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTI GEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK A polypeptide(L) no no EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH REQIGG EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH REQIGG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample 4932 Saccharomyces cerevisiae 562 Escherichia coli PET28B baker's yeast Saccharomyces Escherichia sample 4932 Saccharomyces cerevisiae 562 Escherichia coli PET28B 1 2.55 51.70 VAPOR DIFFUSION, HANGING DROP 6.5 0.1M MES pH6.5, 10% w/v polyethylene glycol 20000, 3% w/v 1,6-hexandiol, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2000-06-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-12-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details RCSB Y RCSB 2000-04-17 REL HOH water Covalent adduct formed between the proteolytic active site thiol and the C-terminal glycine of Smt3 using the reducing agent NaBH4. WAT 1 3 HOH HOH 622 A WAT 2 3 HOH HOH 623 A WAT 3 3 HOH HOH 624 A WAT 4 3 HOH HOH 625 A WAT 5 3 HOH HOH 626 A WAT 6 3 HOH HOH 627 A WAT 7 3 HOH HOH 628 A WAT 8 3 HOH HOH 629 A WAT 9 3 HOH HOH 630 A WAT 10 3 HOH HOH 631 A WAT 11 3 HOH HOH 632 A WAT 12 3 HOH HOH 633 A WAT 13 3 HOH HOH 634 A WAT 14 3 HOH HOH 635 A WAT 15 3 HOH HOH 636 A WAT 16 3 HOH HOH 637 A WAT 17 3 HOH HOH 638 A WAT 18 3 HOH HOH 639 A WAT 19 3 HOH HOH 640 A WAT 20 3 HOH HOH 641 A WAT 21 3 HOH HOH 642 A WAT 22 3 HOH HOH 643 A WAT 23 3 HOH HOH 644 A WAT 24 3 HOH HOH 645 A WAT 25 3 HOH HOH 646 A WAT 27 3 HOH HOH 647 A WAT 30 3 HOH HOH 648 A WAT 31 3 HOH HOH 649 A WAT 32 3 HOH HOH 650 A WAT 33 3 HOH HOH 651 A WAT 34 3 HOH HOH 652 A WAT 35 3 HOH HOH 653 A WAT 38 3 HOH HOH 654 A WAT 39 3 HOH HOH 655 A WAT 40 3 HOH HOH 656 A WAT 41 3 HOH HOH 657 A WAT 44 3 HOH HOH 658 A WAT 45 3 HOH HOH 659 A WAT 46 3 HOH HOH 660 A WAT 47 3 HOH HOH 661 A WAT 49 3 HOH HOH 662 A WAT 50 3 HOH HOH 663 A WAT 51 3 HOH HOH 664 A WAT 53 3 HOH HOH 665 A WAT 54 3 HOH HOH 666 A WAT 55 3 HOH HOH 667 A WAT 57 3 HOH HOH 668 A WAT 58 3 HOH HOH 669 A WAT 59 3 HOH HOH 670 A WAT 60 3 HOH HOH 671 A WAT 61 3 HOH HOH 672 A WAT 63 3 HOH HOH 673 A WAT 64 3 HOH HOH 674 A WAT 65 3 HOH HOH 675 A WAT 66 3 HOH HOH 676 A WAT 67 3 HOH HOH 677 A WAT 68 3 HOH HOH 678 A WAT 69 3 HOH HOH 679 A WAT 70 3 HOH HOH 680 A WAT 72 3 HOH HOH 681 A WAT 73 3 HOH HOH 682 A WAT 74 3 HOH HOH 683 A WAT 75 3 HOH HOH 684 A WAT 76 3 HOH HOH 685 A WAT 77 3 HOH HOH 686 A WAT 78 3 HOH HOH 687 A WAT 79 3 HOH HOH 688 A WAT 80 3 HOH HOH 689 A WAT 82 3 HOH HOH 690 A WAT 84 3 HOH HOH 691 A WAT 85 3 HOH HOH 692 A WAT 86 3 HOH HOH 693 A WAT 87 3 HOH HOH 694 A WAT 88 3 HOH HOH 695 A WAT 89 3 HOH HOH 696 A WAT 92 3 HOH HOH 697 A WAT 93 3 HOH HOH 698 A WAT 95 3 HOH HOH 699 A WAT 97 3 HOH HOH 700 A WAT 99 3 HOH HOH 701 A WAT 101 3 HOH HOH 702 A WAT 102 3 HOH HOH 703 A WAT 103 3 HOH HOH 704 A WAT 104 3 HOH HOH 705 A WAT 105 3 HOH HOH 706 A WAT 106 3 HOH HOH 707 A WAT 107 3 HOH HOH 708 A WAT 108 3 HOH HOH 709 A WAT 109 3 HOH HOH 710 A WAT 110 3 HOH HOH 711 A WAT 111 3 HOH HOH 712 A WAT 112 3 HOH HOH 713 A WAT 113 3 HOH HOH 714 A WAT 114 3 HOH HOH 715 A WAT 115 3 HOH HOH 716 A WAT 117 3 HOH HOH 717 A WAT 118 3 HOH HOH 718 A WAT 119 3 HOH HOH 719 A WAT 120 3 HOH HOH 720 A WAT 121 3 HOH HOH 721 A WAT 122 3 HOH HOH 722 A WAT 123 3 HOH HOH 723 A WAT 124 3 HOH HOH 724 A WAT 125 3 HOH HOH 725 A WAT 126 3 HOH HOH 726 A WAT 127 3 HOH HOH 727 A WAT 128 3 HOH HOH 728 A WAT 129 3 HOH HOH 729 A WAT 130 3 HOH HOH 730 A WAT 132 3 HOH HOH 731 A WAT 133 3 HOH HOH 732 A WAT 134 3 HOH HOH 733 A WAT 137 3 HOH HOH 734 A WAT 141 3 HOH HOH 735 A WAT 142 3 HOH HOH 736 A WAT 145 3 HOH HOH 737 A WAT 147 3 HOH HOH 738 A WAT 148 3 HOH HOH 739 A WAT 149 3 HOH HOH 740 A WAT 150 3 HOH HOH 741 A WAT 151 3 HOH HOH 742 A WAT 153 3 HOH HOH 743 A WAT 154 3 HOH HOH 744 A WAT 155 3 HOH HOH 745 A WAT 156 3 HOH HOH 746 A WAT 157 3 HOH HOH 747 A WAT 158 3 HOH HOH 748 A WAT 159 3 HOH HOH 749 A WAT 160 3 HOH HOH 750 A WAT 162 3 HOH HOH 751 A WAT 163 3 HOH HOH 752 A WAT 164 3 HOH HOH 753 A WAT 166 3 HOH HOH 754 A WAT 168 3 HOH HOH 755 A WAT 170 3 HOH HOH 756 A WAT 171 3 HOH HOH 757 A WAT 172 3 HOH HOH 758 A WAT 173 3 HOH HOH 759 A WAT 174 3 HOH HOH 760 A WAT 176 3 HOH HOH 761 A WAT 177 3 HOH HOH 762 A WAT 180 3 HOH HOH 763 A WAT 181 3 HOH HOH 764 A WAT 183 3 HOH HOH 765 A WAT 184 3 HOH HOH 766 A WAT 185 3 HOH HOH 767 A WAT 187 3 HOH HOH 768 A WAT 188 3 HOH HOH 769 A WAT 189 3 HOH HOH 770 A WAT 191 3 HOH HOH 771 A WAT 193 3 HOH HOH 772 A WAT 196 3 HOH HOH 773 A WAT 198 3 HOH HOH 774 A WAT 202 3 HOH HOH 775 A WAT 204 3 HOH HOH 776 A WAT 205 3 HOH HOH 777 A WAT 206 3 HOH HOH 778 A WAT 207 3 HOH HOH 779 A WAT 209 3 HOH HOH 780 A WAT 210 3 HOH HOH 781 A WAT 211 3 HOH HOH 782 A WAT 212 3 HOH HOH 783 A WAT 213 3 HOH HOH 784 A WAT 215 3 HOH HOH 785 A WAT 216 3 HOH HOH 786 A WAT 217 3 HOH HOH 787 A WAT 218 3 HOH HOH 788 A WAT 219 3 HOH HOH 789 A WAT 220 3 HOH HOH 790 A WAT 221 3 HOH HOH 791 A WAT 222 3 HOH HOH 792 A WAT 224 3 HOH HOH 793 A WAT 226 3 HOH HOH 794 A WAT 229 3 HOH HOH 795 A WAT 231 3 HOH HOH 796 A WAT 233 3 HOH HOH 797 A WAT 234 3 HOH HOH 798 A WAT 235 3 HOH HOH 799 A WAT 236 3 HOH HOH 800 A WAT 237 3 HOH HOH 801 A WAT 239 3 HOH HOH 802 A WAT 240 3 HOH HOH 803 A WAT 244 3 HOH HOH 804 A WAT 245 3 HOH HOH 805 A WAT 247 3 HOH HOH 806 A WAT 248 3 HOH HOH 807 A WAT 249 3 HOH HOH 808 A WAT 251 3 HOH HOH 809 A WAT 252 3 HOH HOH 810 A WAT 253 3 HOH HOH 811 A WAT 255 3 HOH HOH 812 A WAT 258 3 HOH HOH 813 A WAT 260 3 HOH HOH 814 A WAT 261 3 HOH HOH 815 A WAT 262 3 HOH HOH 816 A WAT 263 3 HOH HOH 817 A WAT 265 3 HOH HOH 818 A WAT 266 3 HOH HOH 819 A WAT 269 3 HOH HOH 820 A WAT 272 3 HOH HOH 821 A WAT 275 3 HOH HOH 822 A WAT 276 3 HOH HOH 823 A WAT 278 3 HOH HOH 824 A WAT 280 3 HOH HOH 825 A WAT 281 3 HOH HOH 826 A WAT 282 3 HOH HOH 827 A WAT 283 3 HOH HOH 828 A WAT 286 3 HOH HOH 829 A WAT 289 3 HOH HOH 830 A WAT 291 3 HOH HOH 831 A WAT 292 3 HOH HOH 832 A WAT 293 3 HOH HOH 833 A WAT 296 3 HOH HOH 834 A WAT 299 3 HOH HOH 835 A WAT 301 3 HOH HOH 836 A WAT 303 3 HOH HOH 837 A WAT 304 3 HOH HOH 838 A WAT 305 3 HOH HOH 839 A WAT 306 3 HOH HOH 840 A WAT 307 3 HOH HOH 841 A WAT 309 3 HOH HOH 842 A WAT 314 3 HOH HOH 843 A WAT 315 3 HOH HOH 844 A WAT 318 3 HOH HOH 845 A WAT 322 3 HOH HOH 846 A WAT 323 3 HOH HOH 847 A WAT 324 3 HOH HOH 848 A WAT 326 3 HOH HOH 849 A WAT 327 3 HOH HOH 850 A WAT 330 3 HOH HOH 851 A WAT 331 3 HOH HOH 852 A WAT 332 3 HOH HOH 853 A WAT 338 3 HOH HOH 854 A WAT 340 3 HOH HOH 855 A WAT 342 3 HOH HOH 856 A WAT 343 3 HOH HOH 857 A WAT 345 3 HOH HOH 858 A WAT 347 3 HOH HOH 859 A WAT 350 3 HOH HOH 860 A WAT 351 3 HOH HOH 861 A WAT 352 3 HOH HOH 862 A WAT 353 3 HOH HOH 863 A WAT 355 3 HOH HOH 864 A WAT 357 3 HOH HOH 865 A WAT 358 3 HOH HOH 866 A WAT 362 3 HOH HOH 867 A WAT 365 3 HOH HOH 868 A WAT 366 3 HOH HOH 869 A WAT 369 3 HOH HOH 870 A WAT 371 3 HOH HOH 871 A WAT 373 3 HOH HOH 872 A WAT 375 3 HOH HOH 873 A WAT 376 3 HOH HOH 874 A WAT 377 3 HOH HOH 875 A WAT 380 3 HOH HOH 876 A WAT 381 3 HOH HOH 877 A WAT 382 3 HOH HOH 878 A WAT 384 3 HOH HOH 879 A WAT 385 3 HOH HOH 880 A WAT 386 3 HOH HOH 881 A WAT 394 3 HOH HOH 882 A WAT 396 3 HOH HOH 883 A WAT 400 3 HOH HOH 884 A WAT 401 3 HOH HOH 885 A WAT 403 3 HOH HOH 886 A WAT 413 3 HOH HOH 887 A WAT 414 3 HOH HOH 888 A WAT 416 3 HOH HOH 889 A WAT 417 3 HOH HOH 890 A WAT 418 3 HOH HOH 891 A WAT 419 3 HOH HOH 892 A WAT 420 3 HOH HOH 893 A WAT 425 3 HOH HOH 894 A WAT 426 3 HOH HOH 895 A WAT 427 3 HOH HOH 896 A WAT 428 3 HOH HOH 897 A WAT 429 3 HOH HOH 898 A WAT 430 3 HOH HOH 899 A WAT 432 3 HOH HOH 900 A WAT 441 3 HOH HOH 901 A WAT 443 3 HOH HOH 902 A WAT 445 3 HOH HOH 903 A WAT 451 3 HOH HOH 904 A WAT 452 3 HOH HOH 905 A WAT 457 3 HOH HOH 906 A WAT 472 3 HOH HOH 907 A WAT 473 3 HOH HOH 908 A WAT 476 3 HOH HOH 909 A WAT 482 3 HOH HOH 910 A WAT 483 3 HOH HOH 911 A WAT 487 3 HOH HOH 912 A WAT 488 3 HOH HOH 913 A WAT 489 3 HOH HOH 914 A WAT 491 3 HOH HOH 915 A WAT 493 3 HOH HOH 916 A WAT 500 3 HOH HOH 917 A WAT 506 3 HOH HOH 918 A WAT 517 3 HOH HOH 919 A WAT 519 3 HOH HOH 920 A WAT 523 3 HOH HOH 921 A WAT 526 3 HOH HOH 922 A WAT 530 3 HOH HOH 923 A WAT 532 3 HOH HOH 924 A WAT 533 3 HOH HOH 925 A WAT 544 3 HOH HOH 926 A WAT 547 3 HOH HOH 927 A WAT 552 3 HOH HOH 928 A WAT 564 3 HOH HOH 929 A WAT 565 3 HOH HOH 930 A WAT 578 3 HOH HOH 931 A WAT 579 3 HOH HOH 932 A WAT 583 3 HOH HOH 933 A WAT 593 3 HOH HOH 934 A WAT 619 3 HOH HOH 935 A WAT 623 3 HOH HOH 936 A WAT 624 3 HOH HOH 937 A WAT 627 3 HOH HOH 938 A WAT 637 3 HOH HOH 939 A WAT 640 3 HOH HOH 940 A WAT 658 3 HOH HOH 941 A WAT 663 3 HOH HOH 942 A WAT 681 3 HOH HOH 943 A WAT 684 3 HOH HOH 944 A WAT 699 3 HOH HOH 945 A WAT 703 3 HOH HOH 946 A WAT 708 3 HOH HOH 947 A WAT 714 3 HOH HOH 948 A WAT 718 3 HOH HOH 949 A WAT 745 3 HOH HOH 950 A WAT 746 3 HOH HOH 951 A WAT 26 3 HOH HOH 99 B WAT 28 3 HOH HOH 100 B WAT 29 3 HOH HOH 101 B WAT 36 3 HOH HOH 102 B WAT 37 3 HOH HOH 103 B WAT 42 3 HOH HOH 104 B WAT 43 3 HOH HOH 105 B WAT 48 3 HOH HOH 106 B WAT 52 3 HOH HOH 107 B WAT 56 3 HOH HOH 108 B WAT 71 3 HOH HOH 109 B WAT 81 3 HOH HOH 110 B WAT 83 3 HOH HOH 111 B WAT 90 3 HOH HOH 112 B WAT 94 3 HOH HOH 113 B WAT 98 3 HOH HOH 114 B WAT 116 3 HOH HOH 115 B WAT 135 3 HOH HOH 116 B WAT 136 3 HOH HOH 117 B WAT 138 3 HOH HOH 118 B WAT 139 3 HOH HOH 119 B WAT 140 3 HOH HOH 120 B WAT 144 3 HOH HOH 121 B WAT 146 3 HOH HOH 122 B WAT 152 3 HOH HOH 123 B WAT 161 3 HOH HOH 124 B WAT 165 3 HOH HOH 125 B WAT 167 3 HOH HOH 126 B WAT 169 3 HOH HOH 127 B WAT 175 3 HOH HOH 128 B WAT 178 3 HOH HOH 129 B WAT 182 3 HOH HOH 130 B WAT 186 3 HOH HOH 131 B WAT 190 3 HOH HOH 132 B WAT 195 3 HOH HOH 133 B WAT 197 3 HOH HOH 134 B WAT 200 3 HOH HOH 135 B WAT 201 3 HOH HOH 136 B WAT 203 3 HOH HOH 137 B WAT 208 3 HOH HOH 138 B WAT 225 3 HOH HOH 139 B WAT 227 3 HOH HOH 140 B WAT 228 3 HOH HOH 141 B WAT 241 3 HOH HOH 142 B WAT 250 3 HOH HOH 143 B WAT 254 3 HOH HOH 144 B WAT 256 3 HOH HOH 145 B WAT 257 3 HOH HOH 146 B WAT 259 3 HOH HOH 147 B WAT 267 3 HOH HOH 148 B WAT 271 3 HOH HOH 149 B WAT 277 3 HOH HOH 150 B WAT 279 3 HOH HOH 151 B WAT 297 3 HOH HOH 152 B WAT 298 3 HOH HOH 153 B WAT 302 3 HOH HOH 154 B WAT 308 3 HOH HOH 155 B WAT 311 3 HOH HOH 156 B WAT 313 3 HOH HOH 157 B WAT 317 3 HOH HOH 158 B WAT 319 3 HOH HOH 159 B WAT 321 3 HOH HOH 160 B WAT 335 3 HOH HOH 161 B WAT 336 3 HOH HOH 162 B WAT 341 3 HOH HOH 163 B WAT 344 3 HOH HOH 164 B WAT 359 3 HOH HOH 165 B WAT 360 3 HOH HOH 166 B WAT 364 3 HOH HOH 167 B WAT 367 3 HOH HOH 168 B WAT 372 3 HOH HOH 169 B WAT 374 3 HOH HOH 170 B WAT 378 3 HOH HOH 171 B WAT 398 3 HOH HOH 172 B WAT 399 3 HOH HOH 173 B WAT 437 3 HOH HOH 174 B WAT 440 3 HOH HOH 175 B WAT 465 3 HOH HOH 176 B WAT 467 3 HOH HOH 177 B WAT 477 3 HOH HOH 178 B WAT 481 3 HOH HOH 179 B WAT 495 3 HOH HOH 180 B WAT 504 3 HOH HOH 181 B WAT 509 3 HOH HOH 182 B WAT 514 3 HOH HOH 183 B WAT 515 3 HOH HOH 184 B WAT 522 3 HOH HOH 185 B WAT 537 3 HOH HOH 186 B WAT 540 3 HOH HOH 187 B WAT 545 3 HOH HOH 188 B WAT 591 3 HOH HOH 189 B WAT 592 3 HOH HOH 190 B WAT 600 3 HOH HOH 191 B WAT 615 3 HOH HOH 192 B WAT 616 3 HOH HOH 193 B WAT 657 3 HOH HOH 194 B WAT 667 3 HOH HOH 195 B WAT 669 3 HOH HOH 196 B WAT 673 3 HOH HOH 197 B WAT 676 3 HOH HOH 198 B WAT 710 3 HOH HOH 199 B WAT 713 3 HOH HOH 200 B ALA 401 n 1 GLY 401 A SER 402 n 2 SER 402 A LEU 403 n 3 LEU 403 A VAL 404 n 4 VAL 404 A PRO 405 n 5 PRO 405 A GLU 406 n 6 GLU 406 A LEU 407 n 7 LEU 407 A ASN 408 n 8 ASN 408 A GLU 409 n 9 GLU 409 A LYS 410 n 10 LYS 410 A ASP 411 n 11 ASP 411 A ASP 412 n 12 ASP 412 A ASP 413 n 13 ASP 413 A GLN 414 n 14 GLN 414 A VAL 415 n 15 VAL 415 A GLN 416 n 16 GLN 416 A LYS 417 n 17 LYS 417 A ALA 418 n 18 ALA 418 A LEU 419 n 19 LEU 419 A ALA 420 n 20 ALA 420 A SER 421 n 21 SER 421 A ARG 422 n 22 ARG 422 A GLU 423 n 23 GLU 423 A ASN 424 n 24 ASN 424 A THR 425 n 25 THR 425 A GLN 426 n 26 GLN 426 A LEU 427 n 27 LEU 427 A MET 428 n 28 MET 428 A ASN 429 n 29 ASN 429 A ARG 430 n 30 ARG 430 A ASP 431 n 31 ASP 431 A ASN 432 n 32 ASN 432 A ILE 433 n 33 ILE 433 A GLU 434 n 34 GLU 434 A ILE 435 n 35 ILE 435 A THR 436 n 36 THR 436 A VAL 437 n 37 VAL 437 A ARG 438 n 38 ARG 438 A ASP 439 n 39 ASP 439 A PHE 440 n 40 PHE 440 A LYS 441 n 41 LYS 441 A THR 442 n 42 THR 442 A LEU 443 n 43 LEU 443 A ALA 444 n 44 ALA 444 A PRO 445 n 45 PRO 445 A ARG 446 n 46 ARG 446 A ARG 447 n 47 ARG 447 A TRP 448 n 48 TRP 448 A LEU 449 n 49 LEU 449 A ASN 450 n 50 ASN 450 A ASP 451 n 51 ASP 451 A THR 452 n 52 THR 452 A ILE 453 n 53 ILE 453 A ILE 454 n 54 ILE 454 A GLU 455 n 55 GLU 455 A PHE 456 n 56 PHE 456 A PHE 457 n 57 PHE 457 A MET 458 n 58 MET 458 A LYS 459 n 59 LYS 459 A TYR 460 n 60 TYR 460 A ILE 461 n 61 ILE 461 A GLU 462 n 62 GLU 462 A LYS 463 n 63 LYS 463 A SER 464 n 64 SER 464 A THR 465 n 65 THR 465 A PRO 466 n 66 PRO 466 A ASN 467 n 67 ASN 467 A THR 468 n 68 THR 468 A VAL 469 n 69 VAL 469 A ALA 470 n 70 ALA 470 A PHE 471 n 71 PHE 471 A ASN 472 n 72 ASN 472 A SER 473 n 73 SER 473 A PHE 474 n 74 PHE 474 A PHE 475 n 75 PHE 475 A TYR 476 n 76 TYR 476 A THR 477 n 77 THR 477 A ASN 478 n 78 ASN 478 A LEU 479 n 79 LEU 479 A SER 480 n 80 SER 480 A GLU 481 n 81 GLU 481 A ARG 482 n 82 ARG 482 A GLY 483 n 83 GLY 483 A TYR 484 n 84 TYR 484 A GLN 485 n 85 GLN 485 A GLY 486 n 86 GLY 486 A VAL 487 n 87 VAL 487 A ARG 488 n 88 ARG 488 A ARG 489 n 89 ARG 489 A TRP 490 n 90 TRP 490 A MET 491 n 91 MET 491 A LYS 492 n 92 LYS 492 A ARG 493 n 93 ARG 493 A LYS 494 n 94 LYS 494 A LYS 495 n 95 LYS 495 A THR 496 n 96 THR 496 A GLN 497 n 97 GLN 497 A ILE 498 n 98 ILE 498 A ASP 499 n 99 ASP 499 A LYS 500 n 100 LYS 500 A LEU 501 n 101 LEU 501 A ASP 502 n 102 ASP 502 A LYS 503 n 103 LYS 503 A ILE 504 n 104 ILE 504 A PHE 505 n 105 PHE 505 A THR 506 n 106 THR 506 A PRO 507 n 107 PRO 507 A ILE 508 n 108 ILE 508 A ASN 509 n 109 ASN 509 A LEU 510 n 110 LEU 510 A ASN 511 n 111 ASN 511 A GLN 512 n 112 GLN 512 A SER 513 n 113 SER 513 A HIS 514 n 114 HIS 514 A TRP 515 n 115 TRP 515 A ALA 516 n 116 ALA 516 A LEU 517 n 117 LEU 517 A GLY 518 n 118 GLY 518 A ILE 519 n 119 ILE 519 A ILE 520 n 120 ILE 520 A ASP 521 n 121 ASP 521 A LEU 522 n 122 LEU 522 A LYS 523 n 123 LYS 523 A LYS 524 n 124 LYS 524 A LYS 525 n 125 LYS 525 A THR 526 n 126 THR 526 A ILE 527 n 127 ILE 527 A GLY 528 n 128 GLY 528 A TYR 529 n 129 TYR 529 A VAL 530 n 130 VAL 530 A ASP 531 n 131 ASP 531 A SER 532 n 132 SER 532 A LEU 533 n 133 LEU 533 A SER 534 n 134 SER 534 A ASN 535 n 135 ASN 535 A GLY 536 n 136 GLY 536 A PRO 537 n 137 PRO 537 A ASN 538 n 138 ASN 538 A ALA 539 n 139 ALA 539 A MET 540 n 140 MET 540 A SER 541 n 141 SER 541 A PHE 542 n 142 PHE 542 A ALA 543 n 143 ALA 543 A ILE 544 n 144 ILE 544 A LEU 545 n 145 LEU 545 A THR 546 n 146 THR 546 A ASP 547 n 147 ASP 547 A LEU 548 n 148 LEU 548 A GLN 549 n 149 GLN 549 A LYS 550 n 150 LYS 550 A TYR 551 n 151 TYR 551 A VAL 552 n 152 VAL 552 A MET 553 n 153 MET 553 A GLU 554 n 154 GLU 554 A GLU 555 n 155 GLU 555 A SER 556 n 156 SER 556 A LYS 557 n 157 LYS 557 A HIS 558 n 158 HIS 558 A THR 559 n 159 THR 559 A ILE 560 n 160 ILE 560 A GLY 561 n 161 GLY 561 A GLU 562 n 162 GLU 562 A ASP 563 n 163 ASP 563 A PHE 564 n 164 PHE 564 A ASP 565 n 165 ASP 565 A LEU 566 n 166 LEU 566 A ILE 567 n 167 ILE 567 A HIS 568 n 168 HIS 568 A LEU 569 n 169 LEU 569 A ASP 570 n 170 ASP 570 A CYS 571 n 171 CYS 571 A PRO 572 n 172 PRO 572 A GLN 573 n 173 GLN 573 A GLN 574 n 174 GLN 574 A PRO 575 n 175 PRO 575 A ASN 576 n 176 ASN 576 A GLY 577 n 177 GLY 577 A TYR 578 n 178 TYR 578 A ASP 579 n 179 ASP 579 A CYS 580 n 180 CYS 580 A GLY 581 n 181 GLY 581 A ILE 582 n 182 ILE 582 A TYR 583 n 183 TYR 583 A VAL 584 n 184 VAL 584 A CYS 585 n 185 CYS 585 A MET 586 n 186 MET 586 A ASN 587 n 187 ASN 587 A THR 588 n 188 THR 588 A LEU 589 n 189 LEU 589 A TYR 590 n 190 TYR 590 A GLY 591 n 191 GLY 591 A SER 592 n 192 SER 592 A ALA 593 n 193 ALA 593 A ASP 594 n 194 ASP 594 A ALA 595 n 195 ALA 595 A PRO 596 n 196 PRO 596 A LEU 597 n 197 LEU 597 A ASP 598 n 198 ASP 598 A PHE 599 n 199 PHE 599 A ASP 600 n 200 ASP 600 A TYR 601 n 201 TYR 601 A LYS 602 n 202 LYS 602 A ASP 603 n 203 ASP 603 A ALA 604 n 204 ALA 604 A ILE 605 n 205 ILE 605 A ARG 606 n 206 ARG 606 A MET 607 n 207 MET 607 A ARG 608 n 208 ARG 608 A ARG 609 n 209 ARG 609 A PHE 610 n 210 PHE 610 A ILE 611 n 211 ILE 611 A ALA 612 n 212 ALA 612 A HIS 613 n 213 HIS 613 A LEU 614 n 214 LEU 614 A ILE 615 n 215 ILE 615 A LEU 616 n 216 LEU 616 A THR 617 n 217 THR 617 A ASP 618 n 218 ASP 618 A ALA 619 n 219 ALA 619 A LEU 620 n 220 LEU 620 A LYS 621 n 221 LYS 621 A n 1 13 B n 2 14 B n 3 15 B n 4 16 B n 5 17 B n 6 18 B n 7 19 B GLY 20 n 8 PRO 20 B GLY 21 n 9 GLU 21 B THR 22 n 10 THR 22 B HIS 23 n 11 HIS 23 B ILE 24 n 12 ILE 24 B ASN 25 n 13 ASN 25 B LEU 26 n 14 LEU 26 B LYS 27 n 15 LYS 27 B VAL 28 n 16 VAL 28 B SER 29 n 17 SER 29 B ASP 30 n 18 ASP 30 B GLY 31 n 19 GLY 31 B SER 32 n 20 SER 32 B SER 33 n 21 SER 33 B GLU 34 n 22 GLU 34 B ILE 35 n 23 ILE 35 B PHE 36 n 24 PHE 36 B PHE 37 n 25 PHE 37 B LYS 38 n 26 LYS 38 B ILE 39 n 27 ILE 39 B LYS 40 n 28 LYS 40 B LYS 41 n 29 LYS 41 B THR 42 n 30 THR 42 B THR 43 n 31 THR 43 B PRO 44 n 32 PRO 44 B LEU 45 n 33 LEU 45 B ARG 46 n 34 ARG 46 B ARG 47 n 35 ARG 47 B LEU 48 n 36 LEU 48 B MET 49 n 37 MET 49 B GLU 50 n 38 GLU 50 B ALA 51 n 39 ALA 51 B PHE 52 n 40 PHE 52 B ALA 53 n 41 ALA 53 B ALA 54 n 42 LYS 54 B ARG 55 n 43 ARG 55 B GLN 56 n 44 GLN 56 B GLY 57 n 45 GLY 57 B LYS 58 n 46 LYS 58 B ALA 59 n 47 GLU 59 B MET 60 n 48 MET 60 B ASP 61 n 49 ASP 61 B SER 62 n 50 SER 62 B LEU 63 n 51 LEU 63 B ARG 64 n 52 ARG 64 B PHE 65 n 53 PHE 65 B LEU 66 n 54 LEU 66 B TYR 67 n 55 TYR 67 B ASP 68 n 56 ASP 68 B GLY 69 n 57 GLY 69 B ILE 70 n 58 ILE 70 B ARG 71 n 59 ARG 71 B ILE 72 n 60 ILE 72 B GLN 73 n 61 GLN 73 B ALA 74 n 62 ALA 74 B GLY 75 n 63 ASP 75 B GLN 76 n 64 GLN 76 B THR 77 n 65 THR 77 B PRO 78 n 66 PRO 78 B GLU 79 n 67 GLU 79 B ASP 80 n 68 ASP 80 B LEU 81 n 69 LEU 81 B ASP 82 n 70 ASP 82 B MET 83 n 71 MET 83 B ALA 84 n 72 GLU 84 B ASP 85 n 73 ASP 85 B ASN 86 n 74 ASN 86 B ASP 87 n 75 ASP 87 B ILE 88 n 76 ILE 88 B ILE 89 n 77 ILE 89 B GLU 90 n 78 GLU 90 B ALA 91 n 79 ALA 91 B HIS 92 n 80 HIS 92 B ARG 93 n 81 ARG 93 B GLU 94 n 82 GLU 94 B GLN 95 n 83 GLN 95 B ILE 96 n 84 ILE 96 B GLY 97 n 85 GLY 97 B GLY 98 n 86 GLY 98 B author_and_software_defined_assembly PISA 2 dimeric 2320 3 14240 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 430 A N ARG 30 A O ILE 433 A O ILE 33 A N VAL 469 A N VAL 69 A O LYS 503 A O LYS 103 A N LEU 510 A N LEU 110 A O HIS 514 A O HIS 114 A N ASP 521 A N ASP 121 A O THR 526 A O THR 126 A N ILE 527 A N ILE 127 A O ASP 565 A O ASP 165 B O ILE 39 B O ILE 27 B N ILE 24 B N ILE 12 B N LYS 27 B N LYS 15 B O ASP 87 B O ASP 75 B O HIS 92 B O HIS 80 B N ARG 64 B N ARG 52 B N TYR 67 B N TYR 55 B O ILE 70 B O ILE 58 1 A CB ARG 422 A CB ARG 22 0 Y 1 A CG ARG 422 A CG ARG 22 0 Y 1 A CD ARG 422 A CD ARG 22 0 Y 1 A NE ARG 422 A NE ARG 22 0 Y 1 A CZ ARG 422 A CZ ARG 22 0 Y 1 A NH1 ARG 422 A NH1 ARG 22 0 Y 1 A NH2 ARG 422 A NH2 ARG 22 0 Y 1 B CB PRO 20 B CB PRO 8 1 Y 1 B CG PRO 20 B CG PRO 8 1 Y 1 B CD PRO 20 B CD PRO 8 1 Y 1 B CB GLU 21 B CB GLU 9 1 Y 1 B CG GLU 21 B CG GLU 9 1 Y 1 B CD GLU 21 B CD GLU 9 1 Y 1 B OE1 GLU 21 B OE1 GLU 9 1 Y 1 B OE2 GLU 21 B OE2 GLU 9 1 Y 1 B CG LYS 54 B CG LYS 42 1 Y 1 B CD LYS 54 B CD LYS 42 1 Y 1 B CE LYS 54 B CE LYS 42 1 Y 1 B NZ LYS 54 B NZ LYS 42 1 Y 1 B CG GLU 59 B CG GLU 47 1 Y 1 B CD GLU 59 B CD GLU 47 1 Y 1 B OE1 GLU 59 B OE1 GLU 47 1 Y 1 B OE2 GLU 59 B OE2 GLU 47 1 Y 1 B CB ASP 75 B CB ASP 63 1 Y 1 B CG ASP 75 B CG ASP 63 1 Y 1 B OD1 ASP 75 B OD1 ASP 63 1 Y 1 B OD2 ASP 75 B OD2 ASP 63 1 Y 1 B CG GLU 84 B CG GLU 72 1 Y 1 B CD GLU 84 B CD GLU 72 1 Y 1 B OE1 GLU 84 B OE1 GLU 72 1 Y 1 B OE2 GLU 84 B OE2 GLU 72 1 Y 1 B GLU 13 B GLU 1 1 Y 1 B VAL 14 B VAL 2 1 Y 1 B LYS 15 B LYS 3 1 Y 1 B PRO 16 B PRO 4 1 Y 1 B GLU 17 B GLU 5 1 Y 1 B VAL 18 B VAL 6 1 Y 1 B LYS 19 B LYS 7 1 Y 1 A A NE O ARG HOH 422 875 1.12 1 A A CD O ARG HOH 422 875 2.02 1 A A NE O ARG HOH 422 821 2.14 1 A A CZ O ARG HOH 422 875 2.17 1 A A O O HOH HOH 906 949 2.17 1 9.42 0.90 118.30 127.72 A A A CB CG OD1 ASP ASP ASP 412 412 412 N 1 11.79 1.50 110.50 122.29 A A A N CA CB SER SER SER 421 421 421 N 1 21.29 2.00 110.40 131.69 A A A CB CA C ARG ARG ARG 422 422 422 N 1 15.48 2.20 113.40 128.88 A A A CA CB CG ARG ARG ARG 422 422 422 N 1 25.84 2.70 114.20 140.04 A A A CB CG CD GLU GLU GLU 423 423 423 N 1 -12.38 1.40 123.60 111.22 A A A CD NE CZ ARG ARG ARG 446 446 446 N 1 10.64 0.50 120.30 130.94 A A A NE CZ NH1 ARG ARG ARG 446 446 446 N 1 -11.35 0.50 120.30 108.95 A A A NE CZ NH2 ARG ARG ARG 446 446 446 N 1 9.24 1.40 123.60 132.84 A A A CD NE CZ ARG ARG ARG 482 482 482 N 1 6.54 0.90 118.30 124.84 A A A CB CG OD1 ASP ASP ASP 499 499 499 N 1 6.43 0.90 118.30 124.73 A A A CB CG OD1 ASP ASP ASP 598 598 598 N 1 4.83 0.60 121.00 125.83 A A A CB CG CD2 TYR TYR TYR 601 601 601 N 1 -5.92 0.60 121.00 115.08 A A A CB CG CD1 TYR TYR TYR 601 601 601 N 1 3.64 0.50 120.30 123.94 A A A NE CZ NH1 ARG ARG ARG 606 606 606 N 1 -3.32 0.50 120.30 116.98 A A A NE CZ NH2 ARG ARG ARG 608 608 608 N 1 8.86 1.40 123.60 132.46 B B B CD NE CZ ARG ARG ARG 93 93 93 N 1 A A CA CB ARG ARG 422 422 -0.340 0.022 1.535 1.195 N 1 B B C O GLY GLY 98 98 0.124 0.016 1.232 1.356 N 1 A A O O HOH HOH 625 892 1.28 1_555 3_548 1 A A O O HOH HOH 625 895 1.62 1_555 3_548 1 A A O O HOH HOH 672 908 1.68 1_555 3_558 1 A A O O HOH HOH 662 931 2.07 1_555 3_558 1 A A O O HOH HOH 642 931 2.18 1_555 3_558 1 A A O O HOH HOH 645 908 2.18 1_555 3_558 1 A GLU 423 112.62 151.65 1 B GLU 21 -87.00 -84.41 1 B SER 32 -137.38 -37.68 1 B ASP 75 101.77 -22.93 Used a -loglikelihood residual derived from Rice distribution for centric and acentric cases of Fs sparse matrix procedure with anisotropic B-factor refinement. 0.2510000 0.1900000 0.1930000 0.1930000 1.6 25. 2378 49234 47560 96.6 5% of the observed data 1 1. 0. Engh & Huber 1.6 25. 432 2849 0 0 2417 0.013 1.6 20.694 1.6 25 1EUV 49560 47875 0 0 0.0430000 1 16.4 9.4 96.6 0.2900000 1.6 1.66 4227 4.3 86. phasing SHARP refinement REFMAC data reduction DENZO data scaling SCALEPACK X-RAY STRUCTURE OF THE C-TERMINAL ULP1 PROTEASE DOMAIN IN COMPLEX WITH SMT3, THE YEAST ORTHOLOG OF SUMO. 1 N N 2 N N 3 N N 3 N N The biological assembly is a monomer constructed from chain A. The biological assembly is a monomer constructed from chain B. A ASN 408 A ASN 8 HELX_P A ALA 420 A ALA 20 1 1 13 A VAL 437 A VAL 37 HELX_P A LYS 441 A LYS 41 1 2 5 A THR 442 A THR 42 HELX_P A ALA 444 A ALA 44 5 3 3 A ASN 450 A ASN 50 HELX_P A THR 465 A THR 65 1 4 16 A SER 473 A SER 73 HELX_P A GLY 483 A GLY 83 1 5 11 A TYR 484 A TYR 84 HELX_P A VAL 487 A VAL 87 5 6 4 A MET 491 A MET 91 HELX_P A LYS 495 A LYS 95 5 7 5 A GLN 497 A GLN 97 HELX_P A LEU 501 A LEU 101 5 8 5 A ASN 538 A ASN 138 HELX_P A SER 556 A SER 156 1 9 19 A ASP 579 A ASP 179 HELX_P A ALA 593 A ALA 193 1 10 15 A ASP 600 A ASP 200 HELX_P A THR 617 A THR 217 1 11 18 B LEU 45 B LEU 33 HELX_P B GLN 56 B GLN 44 1 12 12 B GLU 59 B GLU 47 HELX_P B ASP 61 B ASP 49 5 13 3 covale 1.890 one A CYS 580 A SG CYS 180 1_555 B GLY 98 B C GLY 86 1_555 HYDROLASE SUMO HYDROLASE, UBIQUITIN-LIKE PROTEASE 1, SMT3 HYDROLASE DESUMOYLATING ENZYME, CYSTEINE PROTEASE, SUMO PROCESSING ENZYME, SMT3 PROCESSING ENZYME, NABH4, THIOHEMIACETAL, COVALENT PROTEASE ADDUCT, HYDROLASE ULP1_YEAST UNP 1 401 Q02724 KKLVPELNEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLS ERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTI GEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK SMT3_YEAST UNP 2 13 Q12306 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH REQIGGATY 401 621 1EUV 401 621 Q02724 A 1 1 221 13 98 1EUV 13 98 Q12306 B 2 1 86 1 LYS cloning artifact GLY 401 1EUV A Q02724 UNP 401 1 1 LYS cloning artifact SER 402 1EUV A Q02724 UNP 402 2 2 5 5 anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 426 A GLN 26 A ARG 430 A ARG 30 A ILE 433 A ILE 33 A THR 436 A THR 36 A THR 468 A THR 68 A ALA 470 A ALA 70 A LYS 503 A LYS 103 A LEU 510 A LEU 110 A HIS 514 A HIS 114 A ASP 521 A ASP 121 A THR 526 A THR 126 A VAL 530 A VAL 130 A ASP 565 A ASP 165 A LEU 569 A LEU 169 B GLU 34 B GLU 22 B LYS 40 B LYS 28 B HIS 23 B HIS 11 B SER 29 B SER 17 B ASP 87 B ASP 75 B ARG 93 B ARG 81 B LEU 63 B LEU 51 B TYR 67 B TYR 55 B ILE 70 B ILE 58 B ARG 71 B ARG 59 18 P 21 21 2