0.041841 0.000000 0.000000 0.000000 0.021853 0.000000 0.000000 0.000000 0.020296 0.00000 0.00000 0.00000 Wahl, M.C. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.0 90.0 90.0 23.90 45.76 49.27 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 R C N 155 N O N 156 R C Y 157 N N Y 158 N C Y 159 N N Y 160 N C N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N N Y 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing Y 174 N sing Y 175 N sing Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N doub N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 28 4356 4363 10.1093/nar/28.21.4356 11058136 B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G). 2000 10.2210/pdb1evp/pdb pdb_00001evp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 AREA DETECTOR 1995-07-15 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE 3061.005 DNA/RNA (5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP)-R(*G)-3') 2 syn polymer 18.015 water 77 nat water no no (DC)(DC)(DA)(DC)(DT)(DA)(DG)(DT)(DG)G CCACTAGTGG Q,R polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n 1 2.12 42.06 VAPOR DIFFUSION, SITTING DROP 7.0 MGCL2, SPERMINE, MPD, SODIUM CACODYLATE, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K 298.0 MGCL2 1 SPERMINE 1 SODIUM CACODYLATE 1 MPD 1 MPD 2 1.331 1 19 Q 1 R 20 0.509 Q_DC1:G20_R 1 -7.105 0.092 0.106 -0.320 1.114 1 19 Q 2 R 19 -1.208 Q_DC2:DG19_R 2 -7.536 0.052 0.209 -0.114 3.015 1 20 Q 3 R 18 0.253 Q_DA3:DT18_R 3 -6.205 0.095 0.168 -0.139 8.704 1 19 Q 4 R 17 5.026 Q_DC4:DG17_R 4 -10.295 0.246 -0.007 -0.087 5.863 1 20 Q 5 R 16 -1.811 Q_DT5:DA16_R 5 -13.744 -0.029 0.038 -0.141 -4.946 1 20 Q 6 R 15 2.619 Q_DA6:DT15_R 6 -16.351 0.110 -0.490 -0.077 -7.625 1 19 Q 7 R 14 2.846 Q_DG7:DC14_R 7 -10.874 -0.300 -0.098 -0.121 -2.808 1 20 Q 8 R 13 5.018 Q_DT8:DA13_R 8 -8.085 -0.075 -0.023 -0.161 -2.741 1 19 Q 9 R 12 -0.397 Q_DG9:DC12_R 9 -3.066 -0.144 0.092 -0.118 16.068 1 19 Q 10 R 11 0.562 Q_G10:DC11_R 10 -2.523 -0.180 0.502 -0.044 3.229 31.369 Q Q 1 2 1.828 R R 20 19 3.231 0.986 -0.743 -2.104 QQ_DC1DC2:DG19G20_RR 1 -3.702 6.864 31.140 -4.075 0.684 3.014 30.444 Q Q 2 3 5.994 R R 19 18 3.199 3.142 -0.205 -1.717 QQ_DC2DA3:DT18DG19_RR 2 -0.929 1.773 30.272 -3.868 0.213 3.212 28.451 Q Q 3 4 0.715 R R 18 17 3.220 0.351 0.596 -1.877 QQ_DA3DC4:DG17DT18_RR 3 0.779 -1.585 28.438 -3.898 -1.037 3.100 31.236 Q Q 4 5 7.445 R R 17 16 3.349 3.996 -0.775 -2.115 QQ_DC4DT5:DA16DG17_RR 4 -1.940 3.614 30.926 -4.680 1.076 2.019 34.661 Q Q 5 6 35.154 R R 16 15 3.452 19.742 -0.552 -1.459 QQ_DT5DA6:DT15DA16_RR 5 1.753 -3.122 28.579 -5.251 1.176 2.514 28.304 Q Q 6 7 21.939 R R 15 14 3.426 10.481 1.380 -1.741 QQ_DA6DG7:DC14DT15_RR 6 -0.883 1.848 26.315 -5.848 -3.015 3.135 28.952 Q Q 7 8 3.487 R R 14 13 3.259 1.742 0.090 -2.024 QQ_DG7DT8:DA13DC14_RR 7 0.381 -0.762 28.899 -4.426 -0.098 2.970 29.913 Q Q 8 9 10.178 R R 13 12 3.334 5.226 -0.441 -1.935 QQ_DT8DG9:DC12DA13_RR 8 -1.235 2.404 29.438 -4.801 0.606 2.394 23.754 Q Q 9 10 16.033 R R 12 11 2.894 6.485 -1.297 -2.111 QQ_DG9G10:DC11DC12_RR 9 -4.069 10.061 22.503 -6.907 2.036 software chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references 1 0 2000-05-01 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2000-04-20 REL HOH water HOH 102 2 HOH HOH 102 Q HOH 103 2 HOH HOH 103 Q HOH 104 2 HOH HOH 104 Q HOH 109 2 HOH HOH 109 Q HOH 110 2 HOH HOH 110 Q HOH 115 2 HOH HOH 115 Q HOH 117 2 HOH HOH 117 Q HOH 118 2 HOH HOH 118 Q HOH 119 2 HOH HOH 119 Q HOH 120 2 HOH HOH 120 Q HOH 121 2 HOH HOH 121 Q HOH 122 2 HOH HOH 122 Q HOH 123 2 HOH HOH 123 Q HOH 128 2 HOH HOH 128 Q HOH 129 2 HOH HOH 129 Q HOH 130 2 HOH HOH 130 Q HOH 133 2 HOH HOH 133 Q HOH 134 2 HOH HOH 134 Q HOH 135 2 HOH HOH 135 Q HOH 139 2 HOH HOH 139 Q HOH 141 2 HOH HOH 141 Q HOH 143 2 HOH HOH 143 Q HOH 144 2 HOH HOH 144 Q HOH 146 2 HOH HOH 146 Q HOH 147 2 HOH HOH 147 Q HOH 149 2 HOH HOH 149 Q HOH 150 2 HOH HOH 150 Q HOH 151 2 HOH HOH 151 Q HOH 157 2 HOH HOH 157 Q HOH 163 2 HOH HOH 163 Q HOH 164 2 HOH HOH 164 Q HOH 165 2 HOH HOH 165 Q HOH 168 2 HOH HOH 168 Q HOH 171 2 HOH HOH 171 Q HOH 175 2 HOH HOH 175 Q HOH 176 2 HOH HOH 176 Q HOH 101 2 HOH HOH 101 R HOH 105 2 HOH HOH 105 R HOH 106 2 HOH HOH 106 R HOH 107 2 HOH HOH 107 R HOH 108 2 HOH HOH 108 R HOH 111 2 HOH HOH 111 R HOH 112 2 HOH HOH 112 R HOH 113 2 HOH HOH 113 R HOH 114 2 HOH HOH 114 R HOH 116 2 HOH HOH 116 R HOH 124 2 HOH HOH 124 R HOH 125 2 HOH HOH 125 R HOH 126 2 HOH HOH 126 R HOH 127 2 HOH HOH 127 R HOH 131 2 HOH HOH 131 R HOH 132 2 HOH HOH 132 R HOH 136 2 HOH HOH 136 R HOH 137 2 HOH HOH 137 R HOH 138 2 HOH HOH 138 R HOH 140 2 HOH HOH 140 R HOH 142 2 HOH HOH 142 R HOH 145 2 HOH HOH 145 R HOH 148 2 HOH HOH 148 R HOH 152 2 HOH HOH 152 R HOH 153 2 HOH HOH 153 R HOH 154 2 HOH HOH 154 R HOH 155 2 HOH HOH 155 R HOH 156 2 HOH HOH 156 R HOH 158 2 HOH HOH 158 R HOH 159 2 HOH HOH 159 R HOH 160 2 HOH HOH 160 R HOH 161 2 HOH HOH 161 R HOH 162 2 HOH HOH 162 R HOH 166 2 HOH HOH 166 R HOH 167 2 HOH HOH 167 R HOH 169 2 HOH HOH 169 R HOH 170 2 HOH HOH 170 R HOH 172 2 HOH HOH 172 R HOH 173 2 HOH HOH 173 R HOH 174 2 HOH HOH 174 R HOH 177 2 HOH HOH 177 R C 1 n 1 DC 1 Q C 2 n 2 DC 2 Q A 3 n 3 DA 3 Q C 4 n 4 DC 4 Q T 5 n 5 DT 5 Q A 6 n 6 DA 6 Q G 7 n 7 DG 7 Q T 8 n 8 DT 8 Q G 9 n 9 DG 9 Q G 10 n 10 G 10 Q C 11 n 1 DC 11 R C 12 n 2 DC 12 R A 13 n 3 DA 13 R C 14 n 4 DC 14 R T 15 n 5 DT 15 R A 16 n 6 DA 16 R G 17 n 7 DG 17 R T 18 n 8 DT 18 R G 19 n 9 DG 19 R G 20 n 10 G 20 R author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 Q DC 1 0.067 SIDE CHAIN 1 Q DC 4 0.072 SIDE CHAIN 1 R DC 12 0.066 SIDE CHAIN 1 8.16 1.20 115.70 123.86 Q Q Q C5' C4' C3' DG DG DG 7 7 7 N 1 -12.50 1.90 112.60 100.10 Q Q Q N9 C1' C2' DG DG DG 7 7 7 N 1 -6.00 0.90 105.70 99.70 R R R O5' P OP2 DC DC DC 12 12 12 N 1 -11.51 1.90 112.60 101.09 R R R N1 C1' C2' DC DC DC 12 12 12 N 1 1.80 0.30 108.30 110.10 R R R O4' C1' N1 DC DC DC 12 12 12 N 0.228 0.166 0.166 1.8 8.0 464 4634 10 RANDOM 1 THROUGHOUT 2.0 1.8 8.0 77 483 0 406 0 0.013 2.5 1.8 20.0 1EVP 4634 4634 0.031 1 87.4 1.80 1.90 67.2 data scaling X-GEN data reduction X-GEN model building X-PLOR refinement X-PLOR 3.851 phasing X-PLOR CRYSTAL STRUCTURE OF THE CHIMERICAL DECAMER D(CCACTAGTG)R(G) 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK Q DC 1 A N3 DC 1 1_555 R G 20 B N1 G 10 1_555 hydrog WATSON-CRICK Q DC 1 A N4 DC 1 1_555 R G 20 B O6 G 10 1_555 hydrog WATSON-CRICK Q DC 1 A O2 DC 1 1_555 R G 20 B N2 G 10 1_555 hydrog WATSON-CRICK Q DC 2 A N3 DC 2 1_555 R DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK Q DC 2 A N4 DC 2 1_555 R DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK Q DC 2 A O2 DC 2 1_555 R DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK Q DA 3 A N1 DA 3 1_555 R DT 18 B N3 DT 8 1_555 hydrog WATSON-CRICK Q DA 3 A N6 DA 3 1_555 R DT 18 B O4 DT 8 1_555 hydrog WATSON-CRICK Q DC 4 A N3 DC 4 1_555 R DG 17 B N1 DG 7 1_555 hydrog WATSON-CRICK Q DC 4 A N4 DC 4 1_555 R DG 17 B O6 DG 7 1_555 hydrog WATSON-CRICK Q DC 4 A O2 DC 4 1_555 R DG 17 B N2 DG 7 1_555 hydrog WATSON-CRICK Q DT 5 A N3 DT 5 1_555 R DA 16 B N1 DA 6 1_555 hydrog WATSON-CRICK Q DT 5 A O4 DT 5 1_555 R DA 16 B N6 DA 6 1_555 hydrog WATSON-CRICK Q DA 6 A N1 DA 6 1_555 R DT 15 B N3 DT 5 1_555 hydrog WATSON-CRICK Q DA 6 A N6 DA 6 1_555 R DT 15 B O4 DT 5 1_555 hydrog WATSON-CRICK Q DG 7 A N1 DG 7 1_555 R DC 14 B N3 DC 4 1_555 hydrog WATSON-CRICK Q DG 7 A N2 DG 7 1_555 R DC 14 B O2 DC 4 1_555 hydrog WATSON-CRICK Q DG 7 A O6 DG 7 1_555 R DC 14 B N4 DC 4 1_555 hydrog WATSON-CRICK Q DT 8 A N3 DT 8 1_555 R DA 13 B N1 DA 3 1_555 hydrog WATSON-CRICK Q DT 8 A O4 DT 8 1_555 R DA 13 B N6 DA 3 1_555 hydrog WATSON-CRICK Q DG 9 A N1 DG 9 1_555 R DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK Q DG 9 A N2 DG 9 1_555 R DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK Q DG 9 A O6 DG 9 1_555 R DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK Q G 10 A N1 G 10 1_555 R DC 11 B N3 DC 1 1_555 hydrog WATSON-CRICK Q G 10 A N2 G 10 1_555 R DC 11 B O2 DC 1 1_555 hydrog WATSON-CRICK Q G 10 A O6 G 10 1_555 R DC 11 B N4 DC 1 1_555 DNA-RNA HYBRID A-DNA, B-DNA, DNA-RNA CHIMERA, NUCLEIC ACID STRUCTURE, STRUCTURAL CONVERSION, DNA-RNA COMPLEX, DNA-RNA HYBRID 1EVP PDB 1 1EVP 1 10 1EVP 1 10 1EVP Q 1 1 10 11 20 1EVP 11 20 1EVP R 1 1 10 19 orthorhombic P 21 21 21