0.041841
0.000000
0.000000
0.000000
0.021853
0.000000
0.000000
0.000000
0.020296
0.00000
0.00000
0.00000
Wahl, M.C.
Sundaralingam, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.0
90.0
90.0
23.90
45.76
49.27
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
R
C
N
155
N
O
N
156
R
C
Y
157
N
N
Y
158
N
C
Y
159
N
N
Y
160
N
C
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
C
N
165
N
N
N
166
N
N
Y
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
Y
174
N
sing
Y
175
N
sing
Y
176
N
doub
N
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
doub
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
28
4356
4363
10.1093/nar/28.21.4356
11058136
B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G).
2000
10.2210/pdb1evp/pdb
pdb_00001evp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
AREA DETECTOR
1995-07-15
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
3061.005
DNA/RNA (5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP)-R(*G)-3')
2
syn
polymer
18.015
water
77
nat
water
no
no
(DC)(DC)(DA)(DC)(DT)(DA)(DG)(DT)(DG)G
CCACTAGTGG
Q,R
polydeoxyribonucleotide/polyribonucleotide hybrid
n
n
n
n
n
n
n
n
n
n
1
2.12
42.06
VAPOR DIFFUSION, SITTING DROP
7.0
MGCL2, SPERMINE, MPD, SODIUM CACODYLATE, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
298.0
MGCL2
1
SPERMINE
1
SODIUM CACODYLATE
1
MPD
1
MPD
2
1.331
1
19
Q
1
R
20
0.509
Q_DC1:G20_R
1
-7.105
0.092
0.106
-0.320
1.114
1
19
Q
2
R
19
-1.208
Q_DC2:DG19_R
2
-7.536
0.052
0.209
-0.114
3.015
1
20
Q
3
R
18
0.253
Q_DA3:DT18_R
3
-6.205
0.095
0.168
-0.139
8.704
1
19
Q
4
R
17
5.026
Q_DC4:DG17_R
4
-10.295
0.246
-0.007
-0.087
5.863
1
20
Q
5
R
16
-1.811
Q_DT5:DA16_R
5
-13.744
-0.029
0.038
-0.141
-4.946
1
20
Q
6
R
15
2.619
Q_DA6:DT15_R
6
-16.351
0.110
-0.490
-0.077
-7.625
1
19
Q
7
R
14
2.846
Q_DG7:DC14_R
7
-10.874
-0.300
-0.098
-0.121
-2.808
1
20
Q
8
R
13
5.018
Q_DT8:DA13_R
8
-8.085
-0.075
-0.023
-0.161
-2.741
1
19
Q
9
R
12
-0.397
Q_DG9:DC12_R
9
-3.066
-0.144
0.092
-0.118
16.068
1
19
Q
10
R
11
0.562
Q_G10:DC11_R
10
-2.523
-0.180
0.502
-0.044
3.229
31.369
Q
Q
1
2
1.828
R
R
20
19
3.231
0.986
-0.743
-2.104
QQ_DC1DC2:DG19G20_RR
1
-3.702
6.864
31.140
-4.075
0.684
3.014
30.444
Q
Q
2
3
5.994
R
R
19
18
3.199
3.142
-0.205
-1.717
QQ_DC2DA3:DT18DG19_RR
2
-0.929
1.773
30.272
-3.868
0.213
3.212
28.451
Q
Q
3
4
0.715
R
R
18
17
3.220
0.351
0.596
-1.877
QQ_DA3DC4:DG17DT18_RR
3
0.779
-1.585
28.438
-3.898
-1.037
3.100
31.236
Q
Q
4
5
7.445
R
R
17
16
3.349
3.996
-0.775
-2.115
QQ_DC4DT5:DA16DG17_RR
4
-1.940
3.614
30.926
-4.680
1.076
2.019
34.661
Q
Q
5
6
35.154
R
R
16
15
3.452
19.742
-0.552
-1.459
QQ_DT5DA6:DT15DA16_RR
5
1.753
-3.122
28.579
-5.251
1.176
2.514
28.304
Q
Q
6
7
21.939
R
R
15
14
3.426
10.481
1.380
-1.741
QQ_DA6DG7:DC14DT15_RR
6
-0.883
1.848
26.315
-5.848
-3.015
3.135
28.952
Q
Q
7
8
3.487
R
R
14
13
3.259
1.742
0.090
-2.024
QQ_DG7DT8:DA13DC14_RR
7
0.381
-0.762
28.899
-4.426
-0.098
2.970
29.913
Q
Q
8
9
10.178
R
R
13
12
3.334
5.226
-0.441
-1.935
QQ_DT8DG9:DC12DA13_RR
8
-1.235
2.404
29.438
-4.801
0.606
2.394
23.754
Q
Q
9
10
16.033
R
R
12
11
2.894
6.485
-1.297
-2.111
QQ_DG9G10:DC11DC12_RR
9
-4.069
10.061
22.503
-6.907
2.036
software
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2000-05-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2000-04-20
REL
HOH
water
HOH
102
2
HOH
HOH
102
Q
HOH
103
2
HOH
HOH
103
Q
HOH
104
2
HOH
HOH
104
Q
HOH
109
2
HOH
HOH
109
Q
HOH
110
2
HOH
HOH
110
Q
HOH
115
2
HOH
HOH
115
Q
HOH
117
2
HOH
HOH
117
Q
HOH
118
2
HOH
HOH
118
Q
HOH
119
2
HOH
HOH
119
Q
HOH
120
2
HOH
HOH
120
Q
HOH
121
2
HOH
HOH
121
Q
HOH
122
2
HOH
HOH
122
Q
HOH
123
2
HOH
HOH
123
Q
HOH
128
2
HOH
HOH
128
Q
HOH
129
2
HOH
HOH
129
Q
HOH
130
2
HOH
HOH
130
Q
HOH
133
2
HOH
HOH
133
Q
HOH
134
2
HOH
HOH
134
Q
HOH
135
2
HOH
HOH
135
Q
HOH
139
2
HOH
HOH
139
Q
HOH
141
2
HOH
HOH
141
Q
HOH
143
2
HOH
HOH
143
Q
HOH
144
2
HOH
HOH
144
Q
HOH
146
2
HOH
HOH
146
Q
HOH
147
2
HOH
HOH
147
Q
HOH
149
2
HOH
HOH
149
Q
HOH
150
2
HOH
HOH
150
Q
HOH
151
2
HOH
HOH
151
Q
HOH
157
2
HOH
HOH
157
Q
HOH
163
2
HOH
HOH
163
Q
HOH
164
2
HOH
HOH
164
Q
HOH
165
2
HOH
HOH
165
Q
HOH
168
2
HOH
HOH
168
Q
HOH
171
2
HOH
HOH
171
Q
HOH
175
2
HOH
HOH
175
Q
HOH
176
2
HOH
HOH
176
Q
HOH
101
2
HOH
HOH
101
R
HOH
105
2
HOH
HOH
105
R
HOH
106
2
HOH
HOH
106
R
HOH
107
2
HOH
HOH
107
R
HOH
108
2
HOH
HOH
108
R
HOH
111
2
HOH
HOH
111
R
HOH
112
2
HOH
HOH
112
R
HOH
113
2
HOH
HOH
113
R
HOH
114
2
HOH
HOH
114
R
HOH
116
2
HOH
HOH
116
R
HOH
124
2
HOH
HOH
124
R
HOH
125
2
HOH
HOH
125
R
HOH
126
2
HOH
HOH
126
R
HOH
127
2
HOH
HOH
127
R
HOH
131
2
HOH
HOH
131
R
HOH
132
2
HOH
HOH
132
R
HOH
136
2
HOH
HOH
136
R
HOH
137
2
HOH
HOH
137
R
HOH
138
2
HOH
HOH
138
R
HOH
140
2
HOH
HOH
140
R
HOH
142
2
HOH
HOH
142
R
HOH
145
2
HOH
HOH
145
R
HOH
148
2
HOH
HOH
148
R
HOH
152
2
HOH
HOH
152
R
HOH
153
2
HOH
HOH
153
R
HOH
154
2
HOH
HOH
154
R
HOH
155
2
HOH
HOH
155
R
HOH
156
2
HOH
HOH
156
R
HOH
158
2
HOH
HOH
158
R
HOH
159
2
HOH
HOH
159
R
HOH
160
2
HOH
HOH
160
R
HOH
161
2
HOH
HOH
161
R
HOH
162
2
HOH
HOH
162
R
HOH
166
2
HOH
HOH
166
R
HOH
167
2
HOH
HOH
167
R
HOH
169
2
HOH
HOH
169
R
HOH
170
2
HOH
HOH
170
R
HOH
172
2
HOH
HOH
172
R
HOH
173
2
HOH
HOH
173
R
HOH
174
2
HOH
HOH
174
R
HOH
177
2
HOH
HOH
177
R
C
1
n
1
DC
1
Q
C
2
n
2
DC
2
Q
A
3
n
3
DA
3
Q
C
4
n
4
DC
4
Q
T
5
n
5
DT
5
Q
A
6
n
6
DA
6
Q
G
7
n
7
DG
7
Q
T
8
n
8
DT
8
Q
G
9
n
9
DG
9
Q
G
10
n
10
G
10
Q
C
11
n
1
DC
11
R
C
12
n
2
DC
12
R
A
13
n
3
DA
13
R
C
14
n
4
DC
14
R
T
15
n
5
DT
15
R
A
16
n
6
DA
16
R
G
17
n
7
DG
17
R
T
18
n
8
DT
18
R
G
19
n
9
DG
19
R
G
20
n
10
G
20
R
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
Q
DC
1
0.067
SIDE CHAIN
1
Q
DC
4
0.072
SIDE CHAIN
1
R
DC
12
0.066
SIDE CHAIN
1
8.16
1.20
115.70
123.86
Q
Q
Q
C5'
C4'
C3'
DG
DG
DG
7
7
7
N
1
-12.50
1.90
112.60
100.10
Q
Q
Q
N9
C1'
C2'
DG
DG
DG
7
7
7
N
1
-6.00
0.90
105.70
99.70
R
R
R
O5'
P
OP2
DC
DC
DC
12
12
12
N
1
-11.51
1.90
112.60
101.09
R
R
R
N1
C1'
C2'
DC
DC
DC
12
12
12
N
1
1.80
0.30
108.30
110.10
R
R
R
O4'
C1'
N1
DC
DC
DC
12
12
12
N
0.228
0.166
0.166
1.8
8.0
464
4634
10
RANDOM
1
THROUGHOUT
2.0
1.8
8.0
77
483
0
406
0
0.013
2.5
1.8
20.0
1EVP
4634
4634
0.031
1
87.4
1.80
1.90
67.2
data scaling
X-GEN
data reduction
X-GEN
model building
X-PLOR
refinement
X-PLOR
3.851
phasing
X-PLOR
CRYSTAL STRUCTURE OF THE CHIMERICAL DECAMER D(CCACTAGTG)R(G)
1
N
N
1
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
Q
DC
1
A
N3
DC
1
1_555
R
G
20
B
N1
G
10
1_555
hydrog
WATSON-CRICK
Q
DC
1
A
N4
DC
1
1_555
R
G
20
B
O6
G
10
1_555
hydrog
WATSON-CRICK
Q
DC
1
A
O2
DC
1
1_555
R
G
20
B
N2
G
10
1_555
hydrog
WATSON-CRICK
Q
DC
2
A
N3
DC
2
1_555
R
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
Q
DC
2
A
N4
DC
2
1_555
R
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
Q
DC
2
A
O2
DC
2
1_555
R
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
Q
DA
3
A
N1
DA
3
1_555
R
DT
18
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
Q
DA
3
A
N6
DA
3
1_555
R
DT
18
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
Q
DC
4
A
N3
DC
4
1_555
R
DG
17
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
Q
DC
4
A
N4
DC
4
1_555
R
DG
17
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
Q
DC
4
A
O2
DC
4
1_555
R
DG
17
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
Q
DT
5
A
N3
DT
5
1_555
R
DA
16
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
Q
DT
5
A
O4
DT
5
1_555
R
DA
16
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
Q
DA
6
A
N1
DA
6
1_555
R
DT
15
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
Q
DA
6
A
N6
DA
6
1_555
R
DT
15
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
Q
DG
7
A
N1
DG
7
1_555
R
DC
14
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
Q
DG
7
A
N2
DG
7
1_555
R
DC
14
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
Q
DG
7
A
O6
DG
7
1_555
R
DC
14
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
Q
DT
8
A
N3
DT
8
1_555
R
DA
13
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
Q
DT
8
A
O4
DT
8
1_555
R
DA
13
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
Q
DG
9
A
N1
DG
9
1_555
R
DC
12
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
Q
DG
9
A
N2
DG
9
1_555
R
DC
12
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
Q
DG
9
A
O6
DG
9
1_555
R
DC
12
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
Q
G
10
A
N1
G
10
1_555
R
DC
11
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
Q
G
10
A
N2
G
10
1_555
R
DC
11
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
Q
G
10
A
O6
G
10
1_555
R
DC
11
B
N4
DC
1
1_555
DNA-RNA HYBRID
A-DNA, B-DNA, DNA-RNA CHIMERA, NUCLEIC ACID STRUCTURE, STRUCTURAL CONVERSION, DNA-RNA COMPLEX, DNA-RNA HYBRID
1EVP
PDB
1
1EVP
1
10
1EVP
1
10
1EVP
Q
1
1
10
11
20
1EVP
11
20
1EVP
R
1
1
10
19
orthorhombic
P 21 21 21