0.018099
0.000000
0.000120
0.000000
0.030314
0.000000
0.000000
0.000000
0.016160
0.00000
0.00000
0.00000
Jovine, L.
Djordjevic, S.
Rhodes, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
90.38
90.00
55.252
32.988
61.882
C11 H16 N5 O7 P
361.248
n
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O8 P
377.247
n
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H16 N3 O8 P
337.223
n
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H15 N2 O9 P
338.208
n
5-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C11 H18 N5 O8 P
379.263
n
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H15 N2 O9 P
326.197
n
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
C12 H18 N5 O8 P
391.274
n
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C10 H16 N3 O8 P
337.223
n
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O8 P
377.247
n
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H26 N4
202.340
SPERMINE
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C21 H29 N6 O12 P
588.462
n
WYBUTOSINE
Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4,9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL-9-OXO-METHYL ESTER
RNA linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
N
18
N
C
N
19
N
N
N
20
N
N
N
21
N
C
N
22
N
C
N
23
N
N
Y
24
N
C
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
P
N
42
N
O
N
43
N
O
N
44
N
O
N
45
N
O
N
46
N
C
N
47
R
C
N
48
N
O
N
49
S
C
N
50
N
O
N
51
R
C
N
52
N
O
N
53
R
C
Y
54
N
N
Y
55
N
C
Y
56
N
N
Y
57
N
C
N
58
N
C
N
59
N
O
N
60
N
N
N
61
N
C
N
62
N
N
N
63
N
C
N
64
N
N
Y
65
N
C
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
P
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
O
N
90
S
C
N
91
N
O
N
92
R
C
N
93
N
O
N
94
R
C
N
95
N
N
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
C
N
100
N
N
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
N
C
N
122
N
N
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
O
N
129
R
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
R
C
N
134
N
O
N
135
N
O
N
136
N
C
N
137
N
O
N
138
N
P
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
P
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
O
N
162
N
C
N
163
R
C
N
164
N
O
N
165
S
C
N
166
N
O
N
167
R
C
N
168
N
O
N
169
R
C
N
170
N
N
N
171
N
C
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
P
N
202
N
O
N
203
N
O
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
O
N
208
S
C
N
209
N
O
N
210
R
C
N
211
N
O
N
212
R
C
Y
213
N
N
Y
214
N
C
Y
215
N
N
Y
216
N
C
Y
217
N
C
N
218
N
N
Y
219
N
N
Y
220
N
C
Y
221
N
N
Y
222
N
C
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
O
N
238
N
P
N
239
N
O
N
240
N
O
N
241
N
O
N
242
N
C
N
243
R
C
N
244
N
O
N
245
S
C
N
246
N
O
N
247
R
C
N
248
N
O
N
249
R
C
N
250
N
N
N
251
N
C
N
252
N
O
N
253
N
N
N
254
N
C
N
255
N
N
N
256
N
C
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
O
N
273
N
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
C
N
278
R
C
N
279
N
O
N
280
S
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
R
C
Y
285
N
N
Y
286
N
C
Y
287
N
N
Y
288
N
C
N
289
N
C
N
290
N
O
N
291
N
N
N
292
N
C
N
293
N
N
N
294
N
N
Y
295
N
C
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
P
N
311
N
O
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
C
N
316
R
C
N
317
N
O
N
318
S
C
N
319
N
O
N
320
R
C
N
321
R
C
N
322
N
O
N
323
N
N
N
324
N
C
N
325
N
O
N
326
N
N
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
C
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
P
N
350
N
O
N
351
N
O
N
352
N
O
N
353
N
O
N
354
N
C
N
355
R
C
N
356
N
O
N
357
S
C
N
358
N
O
N
359
R
C
N
360
N
O
N
361
R
C
Y
362
N
N
Y
363
N
C
Y
364
N
N
Y
365
N
C
N
366
N
C
N
367
N
O
N
368
N
N
N
369
N
C
N
370
N
N
N
371
N
N
Y
372
N
C
N
373
N
C
N
374
N
C
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
MG
N
394
N
N
N
395
N
C
N
396
N
N
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
N
N
402
R
C
N
403
R
C
N
404
N
O
N
405
N
C
N
406
R
C
N
407
R
C
N
408
N
O
N
409
N
O
N
410
N
C
N
411
N
O
N
412
N
P
N
413
N
O
N
414
N
O
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
P
N
433
N
O
N
434
N
O
N
435
N
O
N
436
N
O
N
437
N
C
N
438
R
C
N
439
N
O
N
440
R
C
N
441
N
O
N
442
R
C
N
443
N
O
N
444
N
C
N
445
R
C
Y
446
N
N
Y
447
N
C
Y
448
N
N
Y
449
N
C
N
450
N
C
N
451
N
O
N
452
N
N
N
453
N
C
N
454
N
N
N
455
N
N
Y
456
N
C
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
N
N
474
N
C
N
475
N
N
N
476
N
C
N
477
N
C
N
478
N
C
N
479
N
O
N
480
N
O
N
481
S
C
N
482
R
C
N
483
N
O
N
484
S
C
N
485
R
C
N
486
N
O
N
487
N
O
N
488
N
C
N
489
N
O
N
490
N
P
N
491
N
O
N
492
N
O
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
N
N
508
N
C
N
509
N
C
N
510
N
C
N
511
N
N
N
512
N
C
N
513
N
C
N
514
N
C
N
515
N
C
N
516
N
N
N
517
N
C
N
518
N
C
N
519
N
C
N
520
N
N
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
O
N
548
N
P
N
549
N
O
N
550
N
O
N
551
N
O
N
552
N
C
N
553
R
C
N
554
N
O
N
555
S
C
N
556
N
O
N
557
R
C
N
558
N
O
N
559
R
C
N
560
N
N
N
561
N
C
N
562
N
O
N
563
N
N
N
564
N
C
N
565
N
O
N
566
N
C
N
567
N
C
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
Y
581
N
N
Y
582
N
N
Y
583
N
C
N
584
N
N
N
585
N
C
Y
586
N
C
Y
587
N
C
N
588
N
C
N
589
N
O
Y
590
N
N
Y
591
N
C
Y
592
N
N
N
593
N
C
Y
594
N
C
Y
595
N
C
N
596
N
C
N
597
N
C
N
598
R
C
N
599
N
C
N
600
N
O
N
601
N
O
N
602
N
C
N
603
N
N
N
604
N
C
N
605
N
O
N
606
N
O
N
607
N
C
N
608
R
C
N
609
R
C
N
610
N
O
N
611
S
C
N
612
N
O
N
613
R
C
N
614
N
O
N
615
N
C
N
616
N
O
N
617
N
P
N
618
N
O
N
619
N
O
N
620
N
O
N
621
N
H
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
H
N
640
N
H
N
641
N
H
N
642
N
H
N
643
N
H
N
644
N
H
N
645
N
H
N
646
N
H
N
647
N
H
N
648
N
H
N
649
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
N
30
N
sing
Y
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
sing
N
72
N
sing
Y
73
N
doub
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
Y
232
N
sing
Y
233
N
sing
Y
234
N
doub
N
235
N
sing
Y
236
N
sing
Y
237
N
sing
Y
238
N
doub
N
239
N
sing
Y
240
N
doub
N
241
N
sing
N
242
N
sing
Y
243
N
sing
Y
244
N
doub
N
245
N
sing
Y
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
sing
Y
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
doub
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
sing
Y
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
sing
Y
476
N
doub
N
477
N
sing
Y
478
N
sing
N
479
N
sing
Y
480
N
doub
N
481
N
doub
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
doub
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
doub
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
doub
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
doub
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
doub
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
doub
N
595
N
sing
N
596
N
doub
N
597
N
sing
N
598
N
sing
Y
599
N
sing
N
600
N
sing
Y
601
N
sing
Y
602
N
doub
Y
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
Y
610
N
doub
Y
611
N
sing
N
612
N
sing
Y
613
N
sing
N
614
N
doub
Y
615
N
doub
Y
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
Y
623
N
doub
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
doub
N
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
doub
N
643
N
sing
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
sing
N
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
doub
N
667
N
sing
N
668
N
sing
N
669
N
sing
N
670
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
301
401
414
10.1006/jmbi.2000.3950
10926517
The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals.
2000
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
72
99
101
High-resolution X-ray diffraction studies on a pure species of transfer RNA
1972
UK
Nature
NATUAS
0006
0028-0836
250
546
551
Structure of yeast phenylalanine tRNA at 3 A resolution
1974
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
72
4414
4418
Structure of yeast phenylalanine transfer RNA at 2.5 A resolution
1975
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
124
523
534
Further refinement of the structure of yeast tRNA Phe
1978
US
Biochemistry
BICHAW
0033
0006-2960
25
4868
4878
Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles
1986
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
44
112
123
10.1107/S010876738700446X
Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals
1988
10.2210/pdb1evv/pdb
pdb_00001evv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1999-04-20
ADSC
SINGLE WAVELENGTH
M
x-ray
1
0.932
1.0
ID14-4
ESRF
0.932
SYNCHROTRON
ESRF BEAMLINE ID14-4
24890.121
PHENYLALANINE TRANSFER RNA
1
nat
polymer
24.305
MAGNESIUM ION
10
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
18.015
water
220
nat
water
no
yes
GCGGAUUUA(2MG)CUCAG(H2U)(H2U)GGGAGAGC(M2G)CCAGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)UGGAG
(7MG)UC(5MC)UGUG(5MU)(PSU)CG(1MA)UCCACAGAAUUCGCACCA
GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Saccharomyces
sample
4930
Saccharomyces
1
2.25
59.7
DIALYSIS
7.5
CRYSTALS GROWN AT 277 K IN 0.010 M TRIS-HCL PH 7.5, 0.012 M MGCL2, 0.002 M SPERMINE, 6% 1,6-HEXANEDIOL. CRYOPROTECTION CONDITIONS: AFTER WASHING IN FRESH CRYSTALLIZATION SOLUTION FOR 10 MIN AND ADDITION OF 30% MPD (V/V), CRYSTALS WERE FLASH-FROZEN IN LIQUID NITROGEN, DIALYSIS, temperature 277.15K
277.15
TRIS-HCL
1
MGCL2
1
SPERMINE
1
1,6-HEXANEDIOL
1
MGCL2
2
1,6-HEXANEDIOL
2
-0.778
1
19
A
1
A
72
-1.897
A_G1:C72_A
1
-6.084
-0.856
-0.059
-0.624
-10.382
1
19
A
2
A
71
1.989
A_C2:G71_A
2
-5.721
-0.287
0.369
-0.203
0.678
1
19
A
3
A
70
-2.562
A_G3:C70_A
3
-10.808
-0.077
0.435
-0.135
10.047
1
28
A
4
A
69
0.141
A_G4:U69_A
4
-5.881
-2.215
0.649
-0.467
6.380
1
20
A
5
A
68
3.681
A_A5:U68_A
5
-19.404
0.112
0.239
-0.203
-9.165
1
20
A
6
A
67
5.553
A_U6:A67_A
6
-19.814
-0.484
0.299
-0.250
-2.619
1
20
A
7
A
66
1.441
A_U7:A66_A
7
-3.685
-0.058
-0.062
-0.286
-0.835
1
19
A
49
A
65
-2.194
A_5MC49:G65_A
8
-7.222
-0.102
0.045
-0.230
-3.253
1
20
A
50
A
64
-2.405
A_U50:A64_A
9
-5.803
-0.130
0.109
-0.247
-4.614
1
19
A
51
A
63
4.243
A_G51:C63_A
10
-13.300
-0.304
0.044
-0.157
-1.354
1
20
A
52
A
62
-0.441
A_U52:A62_A
11
-6.604
-0.557
0.084
-0.153
-10.759
1
19
A
53
A
61
1.824
A_G53:C61_A
12
-6.495
-0.344
-0.181
-0.153
0.310
4
24
A
54
A
58
-100.106
A_5MU54:1MA58_A
13
2.629
4.325
-0.048
-1.864
16.780
2
A
55
A
18
-92.692
A_PSU55:G18_A
14
1.567
0.517
0.294
-5.728
-3.864
A
38
A
32
-0.750
A_A38:OMC32_A
15
1.184
-6.405
0.743
-2.022
6.125
1
21
A
39
A
31
-5.211
A_PSU39:A31_A
16
-15.101
-2.076
0.320
-0.148
4.691
1
19
A
40
A
30
-1.779
A_5MC40:G30_A
17
-14.351
-0.770
-0.044
-0.215
-4.997
1
20
A
41
A
29
12.047
A_U41:A29_A
18
-8.759
-0.062
0.352
0.058
-4.751
1
19
A
42
A
28
-1.525
A_G42:C28_A
19
-9.368
-0.005
0.471
-0.353
-9.407
1
19
A
43
A
27
-2.993
A_G43:C27_A
20
-19.973
-0.186
0.237
-0.321
-20.184
8
A
44
A
26
-14.648
A_A44:M2G26_A
21
-36.279
0.450
-0.386
1.374
-4.332
1
19
A
10
A
25
1.097
A_2MG10:C25_A
22
-7.901
-0.211
-0.046
-0.310
-6.717
1
19
A
11
A
24
4.132
A_C11:G24_A
23
-18.643
0.218
0.193
-0.235
-9.471
1
20
A
12
A
23
-2.716
A_U12:A23_A
24
-3.636
-0.042
0.427
-0.116
5.583
1
19
A
13
A
22
1.510
A_C13:G22_A
25
-2.141
0.256
-0.081
-0.102
5.666
4
24
A
14
A
8
-101.223
A_A14:U8_A
26
10.912
-4.121
0.517
-1.898
1.825
2
22
A
15
A
48
152.066
A_G15:C48_A
27
0.420
0.125
0.101
3.914
-24.992
1
19
A
19
A
56
2.475
A_G19:C56_A
28
-25.375
-0.340
0.028
-0.005
2.905
43.555
A
A
1
2
12.562
A
A
72
71
3.342
9.233
-0.675
-2.102
AA_G1C2:G71C72_AA
1
-5.597
7.615
42.259
-3.696
0.386
2.817
29.584
A
A
2
3
4.863
A
A
71
70
2.936
2.480
-0.086
-1.345
AA_C2G3:C70G71_AA
2
-0.674
1.322
29.475
-3.097
0.043
1.911
25.958
A
A
3
4
19.469
A
A
70
69
2.736
8.534
0.228
-1.804
AA_G3G4:U69C70_AA
3
-4.899
11.176
24.050
-5.755
-1.506
3.121
43.140
A
A
4
5
4.841
A
A
69
68
3.253
3.555
-0.220
-1.391
AA_G4A5:U68U69_AA
4
2.047
-2.788
42.953
-2.232
0.496
2.858
29.621
A
A
5
6
16.767
A
A
68
67
3.481
8.458
0.460
-1.714
AA_A5U6:A67U68_AA
5
-0.284
0.563
28.412
-5.121
-0.959
2.623
36.048
A
A
6
7
16.011
A
A
67
66
3.078
9.787
-0.186
-1.258
AA_U6U7:A66A67_AA
6
1.994
-3.262
34.681
-3.268
0.552
3.032
34.453
A
A
7
49
5.893
A
A
66
65
3.259
3.485
-0.461
-2.061
AA_U75MC49:G65A66_AA
7
0.685
-1.158
34.275
-4.003
0.881
2.610
30.036
A
A
49
50
15.021
A
A
65
64
3.197
7.698
-0.921
-2.096
AA_5MC49U50:A64G65_AA
8
-1.479
2.886
29.017
-5.473
1.503
3.091
31.931
A
A
50
51
8.927
A
A
64
63
3.335
4.892
0.267
-1.430
AA_U50G51:C63A64_AA
9
0.966
-1.762
31.549
-3.476
-0.313
3.011
28.950
A
A
51
52
6.777
A
A
63
62
3.192
3.380
0.264
-1.309
AA_G51U52:A62C63_AA
10
-0.992
1.990
28.739
-3.329
-0.737
2.912
34.643
A
A
52
53
13.185
A
A
62
61
3.373
7.784
0.979
-1.975
AA_U52G53:C61A62_AA
11
2.047
-3.468
33.723
-4.484
-1.337
3.257
91.419
A
A
53
54
-2.766
A
A
61
58
3.179
-3.959
-2.067
-2.577
AA_G535MU54:1MA58C61_AA
12
0.420
-0.294
91.352
-1.724
1.452
3.381
44.252
A
A
54
55
5.550
A
A
58
18
3.334
4.161
2.144
-2.392
AA_5MU54PSU55:G181MA58_AA
13
6.695
-8.931
43.579
-3.577
-2.201
2.726
49.468
A
A
38
39
13.185
A
A
32
31
3.073
10.920
-0.236
-1.364
AA_A38PSU39:A31OMC32_AA
14
-7.010
8.464
47.840
-2.361
-0.187
2.783
39.376
A
A
39
40
10.625
A
A
31
30
3.076
7.122
0.005
-1.414
AA_PSU395MC40:G30A31_AA
15
-0.499
0.745
38.748
-2.861
-0.062
3.350
41.343
A
A
40
41
6.968
A
A
30
29
3.603
4.907
0.776
-1.659
AA_5MC40U41:A29G30_AA
16
-2.077
2.949
41.013
-2.911
-1.337
2.405
27.187
A
A
41
42
16.732
A
A
29
28
3.023
7.760
-0.302
-1.779
AA_U41G42:C28A29_AA
17
-0.136
0.294
26.076
-5.437
0.613
3.005
36.639
A
A
42
43
9.161
A
A
28
27
3.277
5.735
-0.082
-1.515
AA_G42G43:C27C28_AA
18
1.454
-2.322
36.174
-3.171
0.323
3.087
39.250
A
A
43
44
9.034
A
A
27
26
3.412
6.026
-0.675
-1.092
AA_G43A44:M2G26C27_AA
19
5.653
-8.474
38.404
-2.347
1.682
1.967
62.326
A
A
44
10
15.854
A
A
26
25
3.379
16.128
-2.885
-2.650
AA_A442MG10:C25M2G26_AA
20
14.547
-14.300
58.780
-3.185
3.351
2.996
38.474
A
A
10
11
7.035
A
A
25
24
3.145
4.622
-0.954
-1.611
AA_2MG10C11:G24C25_AA
21
-2.754
4.192
38.110
-2.987
1.125
2.934
33.138
A
A
11
12
12.892
A
A
24
23
3.261
7.295
-0.281
-1.204
AA_C11U12:A23G24_AA
22
-1.155
2.041
32.327
-3.289
0.306
3.060
27.788
A
A
12
13
2.180
A
A
23
22
2.848
1.040
1.734
-2.071
AA_U12C13:G22A23_AA
23
5.682
-11.915
27.192
-4.542
-2.364
3.305
58.071
A
A
13
14
-5.305
A
A
22
8
3.280
-5.144
-2.385
-0.296
AA_C13A14:U8G22_AA
24
-0.326
0.336
57.862
-0.030
2.439
3.612
-63.987
A
A
14
15
-6.605
A
A
8
48
3.324
6.987
2.419
-3.447
AA_A14G15:C48U8_AA
25
0.966
0.913
-63.638
2.933
2.327
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2000-05-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr2_auth_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-04-20
REL
REL
MG
MAGNESIUM ION
SPM
SPERMINE
HOH
water
1TRA
PDB ENTRY 1TRA
PDB
experimental model
MG
901
2
MG
MG
901
A
MG
902
2
MG
MG
902
A
MG
903
2
MG
MG
903
A
MG
904
2
MG
MG
904
A
MG
905
2
MG
MG
905
A
MG
906
2
MG
MG
906
A
MG
907
2
MG
MG
907
A
MG
908
2
MG
MG
908
A
MG
909
2
MG
MG
909
A
MG
910
2
MG
MG
910
A
SPM
501
3
SPM
SPM
501
A
HOH
1
4
HOH
HOH
911
A
HOH
2
4
HOH
HOH
912
A
HOH
3
4
HOH
HOH
913
A
HOH
4
4
HOH
HOH
914
A
HOH
5
4
HOH
HOH
915
A
HOH
6
4
HOH
HOH
916
A
HOH
7
4
HOH
HOH
917
A
HOH
8
4
HOH
HOH
918
A
HOH
9
4
HOH
HOH
919
A
HOH
10
4
HOH
HOH
920
A
HOH
11
4
HOH
HOH
921
A
HOH
12
4
HOH
HOH
922
A
HOH
13
4
HOH
HOH
923
A
HOH
14
4
HOH
HOH
924
A
HOH
15
4
HOH
HOH
925
A
HOH
16
4
HOH
HOH
926
A
HOH
17
4
HOH
HOH
927
A
HOH
18
4
HOH
HOH
928
A
HOH
19
4
HOH
HOH
929
A
HOH
20
4
HOH
HOH
930
A
HOH
21
4
HOH
HOH
931
A
HOH
22
4
HOH
HOH
932
A
HOH
23
4
HOH
HOH
933
A
HOH
24
4
HOH
HOH
934
A
HOH
25
4
HOH
HOH
935
A
HOH
26
4
HOH
HOH
936
A
HOH
27
4
HOH
HOH
937
A
HOH
28
4
HOH
HOH
938
A
HOH
29
4
HOH
HOH
939
A
HOH
30
4
HOH
HOH
940
A
HOH
31
4
HOH
HOH
941
A
HOH
32
4
HOH
HOH
942
A
HOH
33
4
HOH
HOH
943
A
HOH
34
4
HOH
HOH
944
A
HOH
35
4
HOH
HOH
945
A
HOH
36
4
HOH
HOH
946
A
HOH
37
4
HOH
HOH
947
A
HOH
38
4
HOH
HOH
948
A
HOH
39
4
HOH
HOH
949
A
HOH
40
4
HOH
HOH
950
A
HOH
41
4
HOH
HOH
951
A
HOH
42
4
HOH
HOH
952
A
HOH
43
4
HOH
HOH
953
A
HOH
44
4
HOH
HOH
954
A
HOH
45
4
HOH
HOH
955
A
HOH
46
4
HOH
HOH
956
A
HOH
47
4
HOH
HOH
957
A
HOH
48
4
HOH
HOH
958
A
HOH
49
4
HOH
HOH
959
A
HOH
50
4
HOH
HOH
960
A
HOH
51
4
HOH
HOH
961
A
HOH
52
4
HOH
HOH
962
A
HOH
53
4
HOH
HOH
963
A
HOH
54
4
HOH
HOH
964
A
HOH
55
4
HOH
HOH
965
A
HOH
56
4
HOH
HOH
966
A
HOH
57
4
HOH
HOH
967
A
HOH
58
4
HOH
HOH
968
A
HOH
59
4
HOH
HOH
969
A
HOH
60
4
HOH
HOH
970
A
HOH
61
4
HOH
HOH
971
A
HOH
62
4
HOH
HOH
972
A
HOH
63
4
HOH
HOH
973
A
HOH
64
4
HOH
HOH
974
A
HOH
65
4
HOH
HOH
975
A
HOH
66
4
HOH
HOH
976
A
HOH
67
4
HOH
HOH
977
A
HOH
68
4
HOH
HOH
978
A
HOH
69
4
HOH
HOH
979
A
HOH
70
4
HOH
HOH
980
A
HOH
71
4
HOH
HOH
981
A
HOH
72
4
HOH
HOH
982
A
HOH
73
4
HOH
HOH
983
A
HOH
74
4
HOH
HOH
984
A
HOH
75
4
HOH
HOH
985
A
HOH
76
4
HOH
HOH
986
A
HOH
77
4
HOH
HOH
987
A
HOH
78
4
HOH
HOH
988
A
HOH
79
4
HOH
HOH
989
A
HOH
80
4
HOH
HOH
990
A
HOH
81
4
HOH
HOH
991
A
HOH
82
4
HOH
HOH
992
A
HOH
83
4
HOH
HOH
993
A
HOH
84
4
HOH
HOH
994
A
HOH
85
4
HOH
HOH
995
A
HOH
86
4
HOH
HOH
996
A
HOH
87
4
HOH
HOH
997
A
HOH
88
4
HOH
HOH
998
A
HOH
89
4
HOH
HOH
999
A
HOH
90
4
HOH
HOH
1000
A
HOH
91
4
HOH
HOH
1001
A
HOH
92
4
HOH
HOH
1002
A
HOH
93
4
HOH
HOH
1003
A
HOH
94
4
HOH
HOH
1004
A
HOH
95
4
HOH
HOH
1005
A
HOH
96
4
HOH
HOH
1006
A
HOH
97
4
HOH
HOH
1007
A
HOH
98
4
HOH
HOH
1008
A
HOH
99
4
HOH
HOH
1009
A
HOH
100
4
HOH
HOH
1010
A
HOH
101
4
HOH
HOH
1011
A
HOH
102
4
HOH
HOH
1012
A
HOH
103
4
HOH
HOH
1013
A
HOH
104
4
HOH
HOH
1014
A
HOH
105
4
HOH
HOH
1015
A
HOH
106
4
HOH
HOH
1016
A
HOH
107
4
HOH
HOH
1017
A
HOH
108
4
HOH
HOH
1018
A
HOH
109
4
HOH
HOH
1019
A
HOH
110
4
HOH
HOH
1020
A
HOH
111
4
HOH
HOH
1021
A
HOH
112
4
HOH
HOH
1022
A
HOH
113
4
HOH
HOH
1023
A
HOH
114
4
HOH
HOH
1024
A
HOH
115
4
HOH
HOH
1025
A
HOH
116
4
HOH
HOH
1026
A
HOH
117
4
HOH
HOH
1027
A
HOH
118
4
HOH
HOH
1028
A
HOH
119
4
HOH
HOH
1029
A
HOH
120
4
HOH
HOH
1030
A
HOH
121
4
HOH
HOH
1031
A
HOH
122
4
HOH
HOH
1032
A
HOH
123
4
HOH
HOH
1033
A
HOH
124
4
HOH
HOH
1034
A
HOH
125
4
HOH
HOH
1035
A
HOH
126
4
HOH
HOH
1036
A
HOH
127
4
HOH
HOH
1037
A
HOH
128
4
HOH
HOH
1038
A
HOH
129
4
HOH
HOH
1039
A
HOH
130
4
HOH
HOH
1040
A
HOH
131
4
HOH
HOH
1041
A
HOH
132
4
HOH
HOH
1042
A
HOH
133
4
HOH
HOH
1043
A
HOH
134
4
HOH
HOH
1044
A
HOH
135
4
HOH
HOH
1045
A
HOH
136
4
HOH
HOH
1046
A
HOH
137
4
HOH
HOH
1047
A
HOH
138
4
HOH
HOH
1048
A
HOH
139
4
HOH
HOH
1049
A
HOH
140
4
HOH
HOH
1050
A
HOH
141
4
HOH
HOH
1051
A
HOH
142
4
HOH
HOH
1052
A
HOH
143
4
HOH
HOH
1053
A
HOH
144
4
HOH
HOH
1054
A
HOH
145
4
HOH
HOH
1055
A
HOH
146
4
HOH
HOH
1056
A
HOH
147
4
HOH
HOH
1057
A
HOH
148
4
HOH
HOH
1058
A
HOH
149
4
HOH
HOH
1059
A
HOH
150
4
HOH
HOH
1060
A
HOH
151
4
HOH
HOH
1061
A
HOH
152
4
HOH
HOH
1062
A
HOH
153
4
HOH
HOH
1063
A
HOH
154
4
HOH
HOH
1064
A
HOH
155
4
HOH
HOH
1065
A
HOH
156
4
HOH
HOH
1066
A
HOH
157
4
HOH
HOH
1067
A
HOH
158
4
HOH
HOH
1068
A
HOH
159
4
HOH
HOH
1069
A
HOH
160
4
HOH
HOH
1070
A
HOH
161
4
HOH
HOH
1071
A
HOH
162
4
HOH
HOH
1072
A
HOH
163
4
HOH
HOH
1073
A
HOH
164
4
HOH
HOH
1074
A
HOH
165
4
HOH
HOH
1075
A
HOH
166
4
HOH
HOH
1076
A
HOH
167
4
HOH
HOH
1077
A
HOH
168
4
HOH
HOH
1078
A
HOH
169
4
HOH
HOH
1079
A
HOH
170
4
HOH
HOH
1080
A
HOH
171
4
HOH
HOH
1081
A
HOH
172
4
HOH
HOH
1082
A
HOH
173
4
HOH
HOH
1083
A
HOH
174
4
HOH
HOH
1084
A
HOH
175
4
HOH
HOH
1085
A
HOH
176
4
HOH
HOH
1086
A
HOH
177
4
HOH
HOH
1087
A
HOH
178
4
HOH
HOH
1088
A
HOH
179
4
HOH
HOH
1089
A
HOH
180
4
HOH
HOH
1090
A
HOH
181
4
HOH
HOH
1091
A
HOH
182
4
HOH
HOH
1092
A
HOH
183
4
HOH
HOH
1093
A
HOH
184
4
HOH
HOH
1094
A
HOH
185
4
HOH
HOH
1095
A
HOH
186
4
HOH
HOH
1096
A
HOH
187
4
HOH
HOH
1097
A
HOH
188
4
HOH
HOH
1098
A
HOH
189
4
HOH
HOH
1099
A
HOH
190
4
HOH
HOH
1100
A
HOH
191
4
HOH
HOH
1101
A
HOH
192
4
HOH
HOH
1102
A
HOH
193
4
HOH
HOH
1103
A
HOH
194
4
HOH
HOH
1104
A
HOH
195
4
HOH
HOH
1105
A
HOH
196
4
HOH
HOH
1106
A
HOH
197
4
HOH
HOH
1107
A
HOH
198
4
HOH
HOH
1108
A
HOH
199
4
HOH
HOH
1109
A
HOH
200
4
HOH
HOH
1110
A
HOH
201
4
HOH
HOH
1111
A
HOH
202
4
HOH
HOH
1112
A
HOH
203
4
HOH
HOH
1113
A
HOH
204
4
HOH
HOH
1114
A
HOH
205
4
HOH
HOH
1115
A
HOH
206
4
HOH
HOH
1116
A
HOH
207
4
HOH
HOH
1117
A
HOH
208
4
HOH
HOH
1118
A
HOH
209
4
HOH
HOH
1119
A
HOH
210
4
HOH
HOH
1120
A
HOH
211
4
HOH
HOH
1121
A
HOH
212
4
HOH
HOH
1122
A
HOH
213
4
HOH
HOH
1123
A
HOH
214
4
HOH
HOH
1124
A
HOH
215
4
HOH
HOH
1125
A
HOH
216
4
HOH
HOH
1126
A
HOH
217
4
HOH
HOH
1127
A
HOH
218
4
HOH
HOH
1128
A
HOH
219
4
HOH
HOH
1129
A
HOH
220
4
HOH
HOH
1130
A
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
G
4
n
4
G
4
A
A
5
n
5
A
5
A
U
6
n
6
U
6
A
U
7
n
7
U
7
A
U
8
n
8
U
8
A
A
9
n
9
A
9
A
2MG
10
n
10
2MG
10
A
C
11
n
11
C
11
A
U
12
n
12
U
12
A
C
13
n
13
C
13
A
A
14
n
14
A
14
A
G
15
n
15
G
15
A
H2U
16
n
16
H2U
16
A
H2U
17
n
17
H2U
17
A
G
18
n
18
G
18
A
G
19
n
19
G
19
A
G
20
n
20
G
20
A
A
21
n
21
A
21
A
G
22
n
22
G
22
A
A
23
n
23
A
23
A
G
24
n
24
G
24
A
C
25
n
25
C
25
A
M2G
26
n
26
M2G
26
A
C
27
n
27
C
27
A
C
28
n
28
C
28
A
A
29
n
29
A
29
A
G
30
n
30
G
30
A
A
31
n
31
A
31
A
OMC
32
n
32
OMC
32
A
U
33
n
33
U
33
A
OMG
34
n
34
OMG
34
A
A
35
n
35
A
35
A
A
36
n
36
A
36
A
YG
37
n
37
YG
37
A
A
38
n
38
A
38
A
PSU
39
n
39
PSU
39
A
5MC
40
n
40
5MC
40
A
U
41
n
41
U
41
A
G
42
n
42
G
42
A
G
43
n
43
G
43
A
A
44
n
44
A
44
A
G
45
n
45
G
45
A
7MG
46
n
46
7MG
46
A
U
47
n
47
U
47
A
C
48
n
48
C
48
A
5MC
49
n
49
5MC
49
A
U
50
n
50
U
50
A
G
51
n
51
G
51
A
U
52
n
52
U
52
A
G
53
n
53
G
53
A
5MU
54
n
54
5MU
54
A
PSU
55
n
55
PSU
55
A
C
56
n
56
C
56
A
G
57
n
57
G
57
A
1MA
58
n
58
1MA
58
A
U
59
n
59
U
59
A
C
60
n
60
C
60
A
C
61
n
61
C
61
A
A
62
n
62
A
62
A
C
63
n
63
C
63
A
A
64
n
64
A
64
A
G
65
n
65
G
65
A
A
66
n
66
A
66
A
A
67
n
67
A
67
A
U
68
n
68
U
68
A
U
69
n
69
U
69
A
C
70
n
70
C
70
A
G
71
n
71
G
71
A
C
72
n
72
C
72
A
A
73
n
73
A
73
A
C
74
n
74
C
74
A
C
75
n
75
C
75
A
A
76
n
76
A
76
A
author_defined_assembly
1
monomeric
A
C
11
A
OP1
C
11
1_555
A
MG
905
F
MG
MG
1_555
A
C
11
A
OP2
C
11
1_555
73.6
A
G
19
A
OP1
G
19
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
918
M
O
HOH
1_555
106.6
A
G
19
A
OP1
G
19
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
919
M
O
HOH
1_555
99.8
A
HOH
918
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
919
M
O
HOH
1_555
87.4
A
G
19
A
OP1
G
19
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
920
M
O
HOH
1_555
170.7
A
HOH
918
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
920
M
O
HOH
1_555
82.5
A
HOH
919
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
920
M
O
HOH
1_555
81.7
A
G
19
A
OP1
G
19
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
921
M
O
HOH
1_555
94.7
A
HOH
918
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
921
M
O
HOH
1_555
89.9
A
HOH
919
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
921
M
O
HOH
1_555
165.5
A
HOH
920
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
921
M
O
HOH
1_555
83.8
A
G
19
A
OP1
G
19
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
922
M
O
HOH
1_555
88.9
A
HOH
918
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
922
M
O
HOH
1_555
163.1
A
HOH
919
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
922
M
O
HOH
1_555
83.5
A
HOH
920
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
922
M
O
HOH
1_555
82.1
A
HOH
921
M
O
HOH
1_555
A
MG
903
D
MG
MG
1_555
A
HOH
922
M
O
HOH
1_555
95.3
A
G
20
A
OP1
G
20
1_555
A
MG
902
C
MG
MG
1_555
A
A
21
A
OP2
A
21
1_555
101.1
A
G
20
A
OP1
G
20
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
1105
M
O
HOH
1_555
108.3
A
A
21
A
OP2
A
21
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
1105
M
O
HOH
1_555
104.2
A
G
20
A
OP1
G
20
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
1114
M
O
HOH
1_555
84.1
A
A
21
A
OP2
A
21
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
1114
M
O
HOH
1_555
162.8
A
HOH
1105
M
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
1114
M
O
HOH
1_555
89.5
A
G
43
A
OP2
G
43
1_555
A
MG
907
H
MG
MG
1_555
A
HOH
971
M
O
HOH
1_555
127.2
A
U
52
A
OP1
U
52
1_555
A
MG
909
J
MG
MG
1_555
A
HOH
1043
M
O
HOH
1_555
125.6
A
U
52
A
OP1
U
52
1_555
A
MG
909
J
MG
MG
1_555
A
HOH
1062
M
O
HOH
1_555
102.3
A
HOH
1043
M
O
HOH
1_555
A
MG
909
J
MG
MG
1_555
A
HOH
1062
M
O
HOH
1_555
109.7
A
G
71
A
O3'
G
71
1_555
A
MG
908
I
MG
MG
1_555
A
C
72
A
OP1
C
72
1_555
67.4
A
G
71
A
O3'
G
71
1_555
A
MG
908
I
MG
MG
1_555
A
C
72
A
OP2
C
72
1_555
72.1
A
C
72
A
OP1
C
72
1_555
A
MG
908
I
MG
MG
1_555
A
C
72
A
OP2
C
72
1_555
65.7
A
HOH
936
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
937
M
O
HOH
1_555
85.9
A
HOH
936
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
938
M
O
HOH
1_555
92.9
A
HOH
937
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
938
M
O
HOH
1_555
173.6
A
HOH
936
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
939
M
O
HOH
1_555
170.5
A
HOH
937
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
939
M
O
HOH
1_555
86.1
A
HOH
938
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
939
M
O
HOH
1_555
94.5
A
HOH
936
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
940
M
O
HOH
1_555
98.7
A
HOH
937
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
940
M
O
HOH
1_555
87.7
A
HOH
938
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
940
M
O
HOH
1_555
98.7
A
HOH
939
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
940
M
O
HOH
1_555
86.1
A
HOH
936
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
941
M
O
HOH
1_555
74.9
A
HOH
937
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
941
M
O
HOH
1_555
91.4
A
HOH
938
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
941
M
O
HOH
1_555
82.3
A
HOH
939
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
941
M
O
HOH
1_555
100.1
A
HOH
940
M
O
HOH
1_555
A
MG
904
E
MG
MG
1_555
A
HOH
941
M
O
HOH
1_555
173.7
A
2MG
10
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
2MG
10
G
A
H2U
16
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
16
U
A
H2U
17
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
17
U
A
M2G
26
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
A
M2G
26
G
A
OMC
32
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
A
OMC
32
C
A
OMG
34
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
OMG
34
G
A
YG
37
WYBUTOSINE
A
YG
37
G
A
PSU
39
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
39
U
A
5MC
40
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
A
5MC
40
C
A
7MG
46
A
7MG
46
G
A
5MC
49
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
A
5MC
49
C
A
5MU
54
5-METHYLURIDINE 5'-MONOPHOSPHATE
A
5MU
54
U
A
PSU
55
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
55
U
A
1MA
58
A
1MA
58
A
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
G
18
0.051
SIDE CHAIN
1
A
G
19
0.057
SIDE CHAIN
1
A
A
62
0.053
SIDE CHAIN
1
-10.09
1.20
109.10
99.01
A
A
A
C5'
C4'
O4'
G
G
G
18
18
18
N
1
A
A
P
OP3
G
G
1
1
-0.087
0.012
1.607
1.520
N
TRNA_RNA.PARAM
TRNA_RNA.TOP
TRNA_ION.PARAM
TRNA_ION.TOP
TRNA_LIGAND.PARAM
TRNA_LIGAND.TOP
WATER_REP.PARA
WATER.TOP
53.6
1.86
0.00
3.76
-0.56
0.00
-1.30
A LOW RESOLUTION LIMIT OF 6.O A WAS USED FOR INITIAL B FACTOR AND BULK SOLVENT CORRECTIONS. THE OCCUPANCY OF NUCLEOTIDE D16, AS WELL AS THOSE OF ATOMS P, O1P, O2P, O5* AND C5* OF NUCLEOTIDE D17, WERE REFINED TO ACCOUNT FOR MG2+-CATALYSED PARTIAL CLEAVAGE OF THE TRNA BACKBONE AT EITHER SIDE OF D16. DENSITY FOR THIS PART OF THE MOLECULE WAS POOR AND ITS PLACEMENT SHOULD THEREFORE BE CONSIDERED TENTATIVE. OCCUPANCIES OF ALL MG2+ IONS, THE SPERMINE AND ALL WATER MOLECULES WERE ALSO REFINED.
0.2630000
0.009
0.2270000
0.2270000
0.2270000
2.00
25.79
926
13678
13678
6.8
88.5
RANDOM
810557.42
0.00000
1
RESTRAINED
THROUGHOUT
0.0
0.0
PDB ENTRY 1TRA
PARKINSON ET AL.
FLAT MODEL
113.1
0.468
0.42
0.32
5.00
0.39
0.29
2.00
25.79
220
1896
24
1652
0
0.009
1.4
12.7
1.3
0.3800000
0.038
0.3240000
2.11
101
1432
7
6.6
70.9
29.3
2.00
25.80
1EVV
13678
13678
0.0
0.0
0.036
1
14.8
3.1
88.6
2.00
2.10
2.2
0.171
1
2.6
70.7
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
phasing
CNS
CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
covale
1.633
both
A
A
9
A
O3'
A
9
1_555
A
2MG
10
A
P
2MG
10
1_555
covale
1.594
both
A
2MG
10
A
O3'
2MG
10
1_555
A
C
11
A
P
C
11
1_555
covale
1.612
both
A
G
15
A
O3'
G
15
1_555
A
H2U
16
A
P
H2U
16
1_555
covale
1.622
both
A
H2U
16
A
O3'
H2U
16
1_555
A
H2U
17
A
P
H2U
17
1_555
covale
1.595
both
A
H2U
17
A
O3'
H2U
17
1_555
A
G
18
A
P
G
18
1_555
covale
1.614
both
A
C
25
A
O3'
C
25
1_555
A
M2G
26
A
P
M2G
26
1_555
covale
1.603
both
A
M2G
26
A
O3'
M2G
26
1_555
A
C
27
A
P
C
27
1_555
covale
1.611
both
A
A
31
A
O3'
A
31
1_555
A
OMC
32
A
P
OMC
32
1_555
covale
1.608
both
A
OMC
32
A
O3'
OMC
32
1_555
A
U
33
A
P
U
33
1_555
covale
1.609
both
A
U
33
A
O3'
U
33
1_555
A
OMG
34
A
P
OMG
34
1_555
covale
1.614
both
A
OMG
34
A
O3'
OMG
34
1_555
A
A
35
A
P
A
35
1_555
covale
1.609
both
A
A
36
A
O3'
A
36
1_555
A
YG
37
A
P
YG
37
1_555
covale
1.605
both
A
YG
37
A
O3'
YG
37
1_555
A
A
38
A
P
A
38
1_555
covale
1.611
both
A
A
38
A
O3'
A
38
1_555
A
PSU
39
A
P
PSU
39
1_555
covale
1.608
both
A
PSU
39
A
O3'
PSU
39
1_555
A
5MC
40
A
P
5MC
40
1_555
covale
1.600
both
A
5MC
40
A
O3'
5MC
40
1_555
A
U
41
A
P
U
41
1_555
covale
1.598
both
A
G
45
A
O3'
G
45
1_555
A
7MG
46
A
P
7MG
46
1_555
covale
1.629
both
A
7MG
46
A
O3'
7MG
46
1_555
A
U
47
A
P
U
47
1_555
covale
1.597
both
A
C
48
A
O3'
C
48
1_555
A
5MC
49
A
P
5MC
49
1_555
covale
1.614
both
A
5MC
49
A
O3'
5MC
49
1_555
A
U
50
A
P
U
50
1_555
covale
1.639
both
A
G
53
A
O3'
G
53
1_555
A
5MU
54
A
P
5MU
54
1_555
covale
1.621
both
A
5MU
54
A
O3'
5MU
54
1_555
A
PSU
55
A
P
PSU
55
1_555
covale
1.607
both
A
PSU
55
A
O3'
PSU
55
1_555
A
C
56
A
P
C
56
1_555
covale
1.586
both
A
G
57
A
O3'
G
57
1_555
A
1MA
58
A
P
1MA
58
1_555
covale
1.638
both
A
1MA
58
A
O3'
1MA
58
1_555
A
U
59
A
P
U
59
1_555
metalc
1.954
A
C
11
A
OP1
C
11
1_555
A
MG
905
F
MG
MG
1_555
metalc
2.301
A
C
11
A
OP2
C
11
1_555
A
MG
905
F
MG
MG
1_555
metalc
2.047
A
G
19
A
OP1
G
19
1_555
A
MG
903
D
MG
MG
1_555
metalc
1.875
A
G
20
A
OP1
G
20
1_555
A
MG
902
C
MG
MG
1_555
metalc
2.039
A
A
21
A
OP2
A
21
1_555
A
MG
902
C
MG
MG
1_555
metalc
1.837
A
G
30
A
OP1
G
30
1_555
A
MG
910
K
MG
MG
1_555
metalc
1.756
A
A
36
A
OP1
A
36
1_555
A
MG
906
G
MG
MG
1_555
metalc
2.158
A
G
43
A
OP2
G
43
1_555
A
MG
907
H
MG
MG
1_555
metalc
2.228
A
U
52
A
OP1
U
52
1_555
A
MG
909
J
MG
MG
1_555
metalc
1.999
A
G
71
A
O3'
G
71
1_555
A
MG
908
I
MG
MG
1_555
metalc
2.466
A
C
72
A
OP1
C
72
1_555
A
MG
908
I
MG
MG
1_555
metalc
2.252
A
C
72
A
OP2
C
72
1_555
A
MG
908
I
MG
MG
1_555
metalc
1.925
A
MG
902
C
MG
MG
1_555
A
HOH
1105
M
O
HOH
1_555
metalc
2.168
A
MG
902
C
MG
MG
1_555
A
HOH
1114
M
O
HOH
1_555
metalc
1.839
A
MG
903
D
MG
MG
1_555
A
HOH
918
M
O
HOH
1_555
metalc
2.196
A
MG
903
D
MG
MG
1_555
A
HOH
919
M
O
HOH
1_555
metalc
2.069
A
MG
903
D
MG
MG
1_555
A
HOH
920
M
O
HOH
1_555
metalc
2.098
A
MG
903
D
MG
MG
1_555
A
HOH
921
M
O
HOH
1_555
metalc
1.917
A
MG
903
D
MG
MG
1_555
A
HOH
922
M
O
HOH
1_555
metalc
2.137
A
MG
904
E
MG
MG
1_555
A
HOH
936
M
O
HOH
1_555
metalc
1.919
A
MG
904
E
MG
MG
1_555
A
HOH
937
M
O
HOH
1_555
metalc
1.761
A
MG
904
E
MG
MG
1_555
A
HOH
938
M
O
HOH
1_555
metalc
1.967
A
MG
904
E
MG
MG
1_555
A
HOH
939
M
O
HOH
1_555
metalc
2.055
A
MG
904
E
MG
MG
1_555
A
HOH
940
M
O
HOH
1_555
metalc
1.987
A
MG
904
E
MG
MG
1_555
A
HOH
941
M
O
HOH
1_555
metalc
2.133
A
MG
907
H
MG
MG
1_555
A
HOH
971
M
O
HOH
1_555
metalc
2.134
A
MG
909
J
MG
MG
1_555
A
HOH
1043
M
O
HOH
1_555
metalc
2.095
A
MG
909
J
MG
MG
1_555
A
HOH
1062
M
O
HOH
1_555
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
72
A
N3
C
72
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
72
A
O2
C
72
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
72
A
N4
C
72
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
71
A
N1
G
71
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
71
A
O6
G
71
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
71
A
N2
G
71
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
70
A
N3
C
70
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
70
A
O2
C
70
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
70
A
N4
C
70
1_555
hydrog
TYPE_28_PAIR
A
G
4
A
N1
G
4
1_555
A
U
69
A
O2
U
69
1_555
hydrog
TYPE_28_PAIR
A
G
4
A
O6
G
4
1_555
A
U
69
A
N3
U
69
1_555
hydrog
WATSON-CRICK
A
A
5
A
N1
A
5
1_555
A
U
68
A
N3
U
68
1_555
hydrog
WATSON-CRICK
A
A
5
A
N6
A
5
1_555
A
U
68
A
O4
U
68
1_555
hydrog
WATSON-CRICK
A
U
6
A
N3
U
6
1_555
A
A
67
A
N1
A
67
1_555
hydrog
WATSON-CRICK
A
U
6
A
O4
U
6
1_555
A
A
67
A
N6
A
67
1_555
hydrog
WATSON-CRICK
A
U
7
A
N3
U
7
1_555
A
A
66
A
N1
A
66
1_555
hydrog
WATSON-CRICK
A
U
7
A
O4
U
7
1_555
A
A
66
A
N6
A
66
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
N3
U
8
1_555
A
A
14
A
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
O2
U
8
1_555
A
A
14
A
N6
A
14
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N6
A
9
1_555
A
A
23
A
N7
A
23
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N7
A
9
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
N1
2MG
10
1_555
A
C
25
A
N3
C
25
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
N2
2MG
10
1_555
A
C
25
A
O2
C
25
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
O6
2MG
10
1_555
A
C
25
A
N4
C
25
1_555
hydrog
2MG-G MISPAIR
A
2MG
10
A
O6
2MG
10
1_555
A
G
45
A
N2
G
45
1_555
hydrog
WATSON-CRICK
A
C
11
A
N3
C
11
1_555
A
G
24
A
N1
G
24
1_555
hydrog
WATSON-CRICK
A
C
11
A
N4
C
11
1_555
A
G
24
A
O6
G
24
1_555
hydrog
WATSON-CRICK
A
C
11
A
O2
C
11
1_555
A
G
24
A
N2
G
24
1_555
hydrog
WATSON-CRICK
A
U
12
A
N3
U
12
1_555
A
A
23
A
N1
A
23
1_555
hydrog
WATSON-CRICK
A
U
12
A
O4
U
12
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
C
13
A
N3
C
13
1_555
A
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
13
A
N4
C
13
1_555
A
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
13
A
O2
C
13
1_555
A
G
22
A
N2
G
22
1_555
hydrog
REVERSED WATSON-CRICK
A
G
15
A
N1
G
15
1_555
A
C
48
A
O2
C
48
1_555
hydrog
REVERSED WATSON-CRICK
A
G
15
A
N2
G
15
1_555
A
C
48
A
N3
C
48
1_555
hydrog
G-PSU MISPAIR
A
G
18
A
N1
G
18
1_555
A
PSU
55
A
O4
PSU
55
1_555
hydrog
WATSON-CRICK
A
G
19
A
N1
G
19
1_555
A
C
56
A
N3
C
56
1_555
hydrog
WATSON-CRICK
A
G
19
A
N2
G
19
1_555
A
C
56
A
O2
C
56
1_555
hydrog
WATSON-CRICK
A
G
19
A
O6
G
19
1_555
A
C
56
A
N4
C
56
1_555
hydrog
TYPE_7_PAIR
A
G
22
A
N7
G
22
1_555
A
7MG
46
A
N1
7MG
46
1_555
hydrog
TYPE_7_PAIR
A
G
22
A
O6
G
22
1_555
A
7MG
46
A
N2
7MG
46
1_555
hydrog
TYPE_8_PAIR
A
M2G
26
A
N1
M2G
26
1_555
A
A
44
A
N1
A
44
1_555
hydrog
TYPE_8_PAIR
A
M2G
26
A
O6
M2G
26
1_555
A
A
44
A
N6
A
44
1_555
hydrog
WATSON-CRICK
A
C
27
A
N3
C
27
1_555
A
G
43
A
N1
G
43
1_555
hydrog
WATSON-CRICK
A
C
27
A
N4
C
27
1_555
A
G
43
A
O6
G
43
1_555
hydrog
WATSON-CRICK
A
C
27
A
O2
C
27
1_555
A
G
43
A
N2
G
43
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
28
1_555
A
G
42
A
N1
G
42
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
28
1_555
A
G
42
A
O6
G
42
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
28
1_555
A
G
42
A
N2
G
42
1_555
hydrog
WATSON-CRICK
A
A
29
A
N1
A
29
1_555
A
U
41
A
N3
U
41
1_555
hydrog
WATSON-CRICK
A
A
29
A
N6
A
29
1_555
A
U
41
A
O4
U
41
1_555
hydrog
WATSON-CRICK
A
G
30
A
N1
G
30
1_555
A
5MC
40
A
N3
5MC
40
1_555
hydrog
WATSON-CRICK
A
G
30
A
N2
G
30
1_555
A
5MC
40
A
O2
5MC
40
1_555
hydrog
WATSON-CRICK
A
G
30
A
O6
G
30
1_555
A
5MC
40
A
N4
5MC
40
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N1
A
31
1_555
A
PSU
39
A
N3
PSU
39
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N6
A
31
1_555
A
PSU
39
A
O2
PSU
39
1_555
hydrog
OMC-A MISPAIR
A
OMC
32
A
O2
OMC
32
1_555
A
A
38
A
N6
A
38
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
N3
5MC
49
1_555
A
G
65
A
N1
G
65
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
N4
5MC
49
1_555
A
G
65
A
O6
G
65
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
O2
5MC
49
1_555
A
G
65
A
N2
G
65
1_555
hydrog
WATSON-CRICK
A
U
50
A
N3
U
50
1_555
A
A
64
A
N1
A
64
1_555
hydrog
WATSON-CRICK
A
U
50
A
O4
U
50
1_555
A
A
64
A
N6
A
64
1_555
hydrog
WATSON-CRICK
A
G
51
A
N1
G
51
1_555
A
C
63
A
N3
C
63
1_555
hydrog
WATSON-CRICK
A
G
51
A
N2
G
51
1_555
A
C
63
A
O2
C
63
1_555
hydrog
WATSON-CRICK
A
G
51
A
O6
G
51
1_555
A
C
63
A
N4
C
63
1_555
hydrog
WATSON-CRICK
A
U
52
A
N3
U
52
1_555
A
A
62
A
N1
A
62
1_555
hydrog
WATSON-CRICK
A
U
52
A
O4
U
52
1_555
A
A
62
A
N6
A
62
1_555
hydrog
WATSON-CRICK
A
G
53
A
N1
G
53
1_555
A
C
61
A
N3
C
61
1_555
hydrog
WATSON-CRICK
A
G
53
A
N2
G
53
1_555
A
C
61
A
O2
C
61
1_555
hydrog
WATSON-CRICK
A
G
53
A
O6
G
53
1_555
A
C
61
A
N4
C
61
1_555
hydrog
REVERSED HOOGSTEEN
A
5MU
54
A
N3
5MU
54
1_555
A
1MA
58
A
N7
1MA
58
1_555
hydrog
REVERSED HOOGSTEEN
A
5MU
54
A
O2
5MU
54
1_555
A
1MA
58
A
N6
1MA
58
1_555
RNA
TRANSFER RNA, PHENYLALANINE, PHE-TRNA, YEAST, AMINO-ACID TRANSPORT, RNA
M10263
GB
1
176479
1
76
1EVV
1
76
176479
A
1
1
76
BINDING SITE FOR RESIDUE MG A 901
A
MG
901
Software
5
BINDING SITE FOR RESIDUE MG A 902
A
MG
902
Software
4
BINDING SITE FOR RESIDUE MG A 903
A
MG
903
Software
6
BINDING SITE FOR RESIDUE MG A 904
A
MG
904
Software
6
BINDING SITE FOR RESIDUE MG A 905
A
MG
905
Software
4
BINDING SITE FOR RESIDUE MG A 906
A
MG
906
Software
2
BINDING SITE FOR RESIDUE MG A 907
A
MG
907
Software
2
BINDING SITE FOR RESIDUE MG A 908
A
MG
908
Software
2
BINDING SITE FOR RESIDUE MG A 909
A
MG
909
Software
3
BINDING SITE FOR RESIDUE MG A 910
A
MG
910
Software
2
BINDING SITE FOR RESIDUE SPM A 501
A
SPM
501
Software
8
A
U
12
A
U
12
5
1_555
A
HOH
985
M
HOH
5
1_555
A
HOH
986
M
HOH
5
1_555
A
HOH
987
M
HOH
5
1_555
A
HOH
988
M
HOH
5
1_555
A
G
20
A
G
20
4
1_555
A
A
21
A
A
21
4
1_555
A
HOH
1105
M
HOH
4
1_555
A
HOH
1114
M
HOH
4
1_555
A
G
19
A
G
19
6
1_555
A
HOH
918
M
HOH
6
1_555
A
HOH
919
M
HOH
6
1_555
A
HOH
920
M
HOH
6
1_555
A
HOH
921
M
HOH
6
1_555
A
HOH
922
M
HOH
6
1_555
A
HOH
936
M
HOH
6
1_555
A
HOH
937
M
HOH
6
1_555
A
HOH
938
M
HOH
6
1_555
A
HOH
939
M
HOH
6
1_555
A
HOH
940
M
HOH
6
1_555
A
HOH
941
M
HOH
6
1_555
A
2MG
10
A
2MG
10
4
1_555
A
C
11
A
C
11
4
1_555
A
HOH
977
M
HOH
4
1_555
A
HOH
1034
M
HOH
4
1_555
A
A
35
A
A
35
2
1_555
A
A
36
A
A
36
2
1_555
A
G
43
A
G
43
2
1_555
A
HOH
971
M
HOH
2
1_555
A
G
71
A
G
71
2
1_555
A
C
72
A
C
72
2
1_555
A
U
52
A
U
52
3
1_555
A
HOH
1043
M
HOH
3
1_555
A
HOH
1062
M
HOH
3
1_555
A
A
29
A
A
29
2
1_555
A
G
30
A
G
30
2
1_555
A
A
14
A
A
14
8
1_565
A
U
52
A
U
52
8
1_555
A
G
53
A
G
53
8
1_555
A
5MU
54
A
5MU
54
8
1_555
A
PSU
55
A
PSU
55
8
1_555
A
G
57
A
G
57
8
1_555
A
1MA
58
A
1MA
58
8
1_555
A
HOH
1108
M
HOH
8
1_565
4
monoclinic
P 1 21 1