0.023728
0.000000
0.000000
0.000000
0.017441
0.000000
0.000000
0.000000
0.007967
0.00000
0.00000
0.00000
Lau, A.Y.
Wyatt, M.D.
Glassner, B.J.
Samson, L.D.
Ellenberger, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90
90
90
42.145
57.336
125.517
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C12 H14 N5 O6 P
355.243
n
3-[2-DEOXY-RIBOFURANOSYL]-3H-1,3,4,5A,8-PENTAAZA-AS-INDACENE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
P
N
232
N
O
N
233
N
O
N
234
N
O
N
235
N
O
Y
236
N
N
Y
237
N
C
Y
238
N
N
Y
239
N
C
Y
240
N
N
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
N
Y
245
N
C
Y
246
N
N
Y
247
N
C
N
248
N
C
N
249
N
C
N
250
R
C
N
251
N
O
N
252
R
C
N
253
S
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
N
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
N
Y
325
N
C
Y
326
N
C
Y
327
N
N
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
S
C
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
N
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
S
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
NA
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
N
N
473
S
C
N
474
N
C
N
475
N
O
N
476
N
C
N
477
N
O
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
R
C
N
491
N
O
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
N
N
504
S
C
N
505
N
C
N
506
N
O
N
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
N
Y
512
N
C
Y
513
N
C
Y
514
N
C
Y
515
N
C
Y
516
N
C
N
517
N
O
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
N
N
531
S
C
N
532
N
C
N
533
N
O
N
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
Y
540
N
C
N
541
N
O
N
542
N
O
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
N
N
555
S
C
N
556
N
C
N
557
N
O
N
558
N
C
N
559
N
C
N
560
N
C
N
561
N
O
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
sing
Y
243
N
doub
Y
244
N
doub
Y
245
N
sing
N
246
N
sing
Y
247
N
sing
Y
248
N
sing
Y
249
N
doub
Y
250
N
sing
Y
251
N
doub
N
252
N
sing
Y
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
sing
Y
331
N
doub
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
Y
438
N
doub
Y
439
N
sing
Y
440
N
sing
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
doub
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
doub
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
Y
507
N
doub
Y
508
N
sing
Y
509
N
sing
N
510
N
sing
Y
511
N
doub
Y
512
N
sing
Y
513
N
sing
N
514
N
sing
Y
515
N
sing
Y
516
N
doub
N
517
N
sing
Y
518
N
doub
N
519
N
sing
Y
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
doub
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
Y
535
N
doub
Y
536
N
sing
Y
537
N
sing
N
538
N
sing
Y
539
N
doub
N
540
N
sing
Y
541
N
doub
N
542
N
sing
Y
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
doub
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
13573
13578
10.1073/pnas.97.25.13573
11106395
Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG.
2000
10.2210/pdb1ewn/pdb
pdb_00001ewn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-07-15
BRANDEIS
SINGLE WAVELENGTH
M
x-ray
1
1.0100
1.0
X25
NSLS
1.0100
SYNCHROTRON
NSLS BEAMLINE X25
1,N6-ETHENOADENINE-DNA
3686.425
DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*C)-3')
1
syn
polymer
3646.405
DNA (5'-D(P*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')
1
syn
polymer
24327.932
3-METHYL-ADENINE DNA GLYCOSYLASE
3.2.2.21
E125Q
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
80
nat
water
2
ALKYLADENINE DNA GLYCOSYLASE, AAG
E.C.3.2.2.21
no
yes
(DG)(DA)(DC)(DA)(DT)(DG)(EDA)(DT)(DT)(DG)(DC)(DC)
GACATGATTGCC
D
polydeoxyribonucleotide
no
no
(DG)(DC)(DA)(DA)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DA)
GCAATCATGTCA
E
polydeoxyribonucleotide
no
no
KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY
IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD
EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETQAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY
IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD
EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PLM1
1
2.37
48.18
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 4000, MgCl2, Tris-HCl, glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
Tris-HCl
1
MgCl2
1
glycerol
1
PEG 4000
1
MgCl2
2
glycerol
2
PEG 4000
2
-14.779
1
19
D
1
E
25
-1.566
D_DG1:DC25_E
1
1.537
-0.344
-1.014
-0.325
-9.036
1
20
D
2
E
24
4.227
D_DA2:DT24_E
2
-3.817
0.105
-0.259
-0.290
1.070
1
19
D
3
E
23
4.485
D_DC3:DG23_E
3
-8.119
0.176
-0.193
0.076
-1.061
1
20
D
4
E
22
0.739
D_DA4:DT22_E
4
-15.446
-0.122
-0.002
0.055
2.097
1
20
D
5
E
21
-1.845
D_DT5:DA21_E
5
-11.649
0.305
-0.017
-0.068
12.408
1
19
D
6
E
20
3.252
D_DG6:DC20_E
6
5.046
-0.173
0.104
-0.177
-2.465
1
20
D
8
E
18
3.051
D_DT8:DA18_E
7
-20.358
-0.212
0.269
0.060
-1.734
1
20
D
9
E
17
-1.200
D_DT9:DA17_E
8
-17.943
0.223
0.243
0.125
9.965
1
19
D
10
E
16
2.439
D_DG10:DC16_E
9
8.464
-0.413
-0.171
-0.197
21.212
1
19
D
11
E
15
-9.384
D_DC11:DG15_E
10
-1.913
0.493
-0.941
-0.221
3.272
37.976
D
D
1
2
0.685
E
E
25
24
3.246
0.444
-0.409
0.143
DD_DG1DA2:DT24DC25_EE
1
-5.758
8.880
37.550
0.163
-0.107
2.937
32.382
D
D
2
3
12.396
E
E
24
23
3.039
6.863
-0.454
-0.191
DD_DA2DC3:DG23DT24_EE
2
-0.253
0.457
31.665
-1.461
0.773
3.509
38.350
D
D
3
4
1.616
E
E
23
22
3.473
1.061
-0.434
0.761
DD_DC3DA4:DT22DG23_EE
3
-2.013
3.066
38.284
1.016
0.391
3.253
33.295
D
D
4
5
4.432
E
E
22
21
3.278
2.536
0.113
-0.227
DD_DA4DT5:DA21DT22_EE
4
2.179
-3.809
33.132
-0.819
0.167
3.107
42.178
D
D
5
6
-6.591
E
E
21
20
3.313
-4.733
0.761
1.963
DD_DT5DG6:DC20DA21_EE
5
1.471
-2.049
41.899
3.207
-0.909
3.354
35.578
D
D
8
9
4.352
E
E
18
17
3.346
2.657
0.258
0.254
DD_DT8DT9:DA17DA18_EE
6
-0.193
0.315
35.482
0.018
-0.451
3.146
32.306
D
D
9
10
-12.288
E
E
17
16
3.268
-6.786
1.510
0.582
DD_DT9DG10:DC16DA17_EE
7
1.559
-2.824
31.567
2.240
-2.440
3.097
38.733
D
D
10
11
-3.471
E
E
16
15
3.217
-2.296
-0.793
-0.015
DD_DG10DC11:DG15DC16_EE
8
4.728
-7.150
38.388
0.251
1.757
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2000-12-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-03
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
contains the same protein complexed with pyrrolidine-DNA
RCSB
Y
RCSB
2000-04-26
REL
NA
SODIUM ION
HOH
water
NA
501
4
NA
NA
501
A
WAT
3
5
HOH
HOH
13
D
WAT
4
5
HOH
HOH
14
D
WAT
24
5
HOH
HOH
15
D
WAT
36
5
HOH
HOH
16
D
WAT
40
5
HOH
HOH
17
D
WAT
42
5
HOH
HOH
18
D
WAT
50
5
HOH
HOH
19
D
WAT
58
5
HOH
HOH
20
D
WAT
63
5
HOH
HOH
21
D
WAT
68
5
HOH
HOH
22
D
WAT
70
5
HOH
HOH
23
D
WAT
73
5
HOH
HOH
24
D
WAT
13
5
HOH
HOH
13
E
WAT
27
5
HOH
HOH
27
E
WAT
33
5
HOH
HOH
33
E
WAT
49
5
HOH
HOH
49
E
WAT
59
5
HOH
HOH
59
E
WAT
77
5
HOH
HOH
77
E
WAT
79
5
HOH
HOH
79
E
WAT
1
5
HOH
HOH
502
A
WAT
2
5
HOH
HOH
503
A
WAT
5
5
HOH
HOH
504
A
WAT
6
5
HOH
HOH
505
A
WAT
7
5
HOH
HOH
506
A
WAT
8
5
HOH
HOH
507
A
WAT
9
5
HOH
HOH
508
A
WAT
10
5
HOH
HOH
509
A
WAT
11
5
HOH
HOH
510
A
WAT
12
5
HOH
HOH
511
A
WAT
14
5
HOH
HOH
512
A
WAT
15
5
HOH
HOH
513
A
WAT
16
5
HOH
HOH
514
A
WAT
17
5
HOH
HOH
515
A
WAT
18
5
HOH
HOH
516
A
WAT
19
5
HOH
HOH
517
A
WAT
20
5
HOH
HOH
518
A
WAT
21
5
HOH
HOH
519
A
WAT
22
5
HOH
HOH
520
A
WAT
23
5
HOH
HOH
521
A
WAT
25
5
HOH
HOH
522
A
WAT
26
5
HOH
HOH
523
A
WAT
28
5
HOH
HOH
524
A
WAT
29
5
HOH
HOH
525
A
WAT
30
5
HOH
HOH
526
A
WAT
31
5
HOH
HOH
527
A
WAT
32
5
HOH
HOH
528
A
WAT
34
5
HOH
HOH
529
A
WAT
35
5
HOH
HOH
530
A
WAT
37
5
HOH
HOH
531
A
WAT
38
5
HOH
HOH
532
A
WAT
39
5
HOH
HOH
533
A
WAT
41
5
HOH
HOH
534
A
WAT
43
5
HOH
HOH
535
A
WAT
44
5
HOH
HOH
536
A
WAT
45
5
HOH
HOH
537
A
WAT
46
5
HOH
HOH
538
A
WAT
47
5
HOH
HOH
539
A
WAT
48
5
HOH
HOH
540
A
WAT
51
5
HOH
HOH
541
A
WAT
52
5
HOH
HOH
542
A
WAT
53
5
HOH
HOH
543
A
WAT
54
5
HOH
HOH
544
A
WAT
55
5
HOH
HOH
545
A
WAT
56
5
HOH
HOH
546
A
WAT
57
5
HOH
HOH
547
A
WAT
60
5
HOH
HOH
548
A
WAT
61
5
HOH
HOH
549
A
WAT
62
5
HOH
HOH
550
A
WAT
64
5
HOH
HOH
551
A
WAT
65
5
HOH
HOH
552
A
WAT
66
5
HOH
HOH
553
A
WAT
67
5
HOH
HOH
554
A
WAT
69
5
HOH
HOH
555
A
WAT
71
5
HOH
HOH
556
A
WAT
72
5
HOH
HOH
557
A
WAT
74
5
HOH
HOH
558
A
WAT
75
5
HOH
HOH
559
A
WAT
76
5
HOH
HOH
560
A
WAT
78
5
HOH
HOH
561
A
WAT
80
5
HOH
HOH
562
A
G
1
n
1
DG
1
D
A
2
n
2
DA
2
D
C
3
n
3
DC
3
D
A
4
n
4
DA
4
D
T
5
n
5
DT
5
D
G
6
n
6
DG
6
D
EDA
7
n
7
EDA
7
D
T
8
n
8
DT
8
D
T
9
n
9
DT
9
D
G
10
n
10
DG
10
D
C
11
n
11
DC
11
D
C
12
n
12
DC
12
D
G
15
n
1
DG
15
E
C
16
n
2
DC
16
E
A
17
n
3
DA
17
E
A
18
n
4
DA
18
E
T
19
n
5
DT
19
E
C
20
n
6
DC
20
E
A
21
n
7
DA
21
E
T
22
n
8
DT
22
E
G
23
n
9
DG
23
E
T
24
n
10
DT
24
E
C
25
n
11
DC
25
E
A
26
n
12
DA
26
E
n
1
80
A
n
2
81
A
HIS
82
n
3
HIS
82
A
LEU
83
n
4
LEU
83
A
THR
84
n
5
THR
84
A
ARG
85
n
6
ARG
85
A
LEU
86
n
7
LEU
86
A
GLY
87
n
8
GLY
87
A
LEU
88
n
9
LEU
88
A
GLU
89
n
10
GLU
89
A
PHE
90
n
11
PHE
90
A
PHE
91
n
12
PHE
91
A
ASP
92
n
13
ASP
92
A
GLN
93
n
14
GLN
93
A
PRO
94
n
15
PRO
94
A
ALA
95
n
16
ALA
95
A
VAL
96
n
17
VAL
96
A
PRO
97
n
18
PRO
97
A
LEU
98
n
19
LEU
98
A
ALA
99
n
20
ALA
99
A
ARG
100
n
21
ARG
100
A
ALA
101
n
22
ALA
101
A
PHE
102
n
23
PHE
102
A
LEU
103
n
24
LEU
103
A
GLY
104
n
25
GLY
104
A
GLN
105
n
26
GLN
105
A
VAL
106
n
27
VAL
106
A
LEU
107
n
28
LEU
107
A
VAL
108
n
29
VAL
108
A
ARG
109
n
30
ARG
109
A
ARG
110
n
31
ARG
110
A
LEU
111
n
32
LEU
111
A
PRO
112
n
33
PRO
112
A
ASN
113
n
34
ASN
113
A
GLY
114
n
35
GLY
114
A
THR
115
n
36
THR
115
A
GLU
116
n
37
GLU
116
A
LEU
117
n
38
LEU
117
A
ARG
118
n
39
ARG
118
A
GLY
119
n
40
GLY
119
A
ARG
120
n
41
ARG
120
A
ILE
121
n
42
ILE
121
A
VAL
122
n
43
VAL
122
A
GLU
123
n
44
GLU
123
A
THR
124
n
45
THR
124
A
GLN
125
n
46
GLN
125
A
ALA
126
n
47
ALA
126
A
TYR
127
n
48
TYR
127
A
LEU
128
n
49
LEU
128
A
GLY
129
n
50
GLY
129
A
PRO
130
n
51
PRO
130
A
GLU
131
n
52
GLU
131
A
ASP
132
n
53
ASP
132
A
GLU
133
n
54
GLU
133
A
ALA
134
n
55
ALA
134
A
ALA
135
n
56
ALA
135
A
HIS
136
n
57
HIS
136
A
SER
137
n
58
SER
137
A
ARG
138
n
59
ARG
138
A
GLY
139
n
60
GLY
139
A
GLY
140
n
61
GLY
140
A
ARG
141
n
62
ARG
141
A
GLN
142
n
63
GLN
142
A
THR
143
n
64
THR
143
A
PRO
144
n
65
PRO
144
A
ARG
145
n
66
ARG
145
A
ASN
146
n
67
ASN
146
A
ARG
147
n
68
ARG
147
A
GLY
148
n
69
GLY
148
A
MET
149
n
70
MET
149
A
PHE
150
n
71
PHE
150
A
MET
151
n
72
MET
151
A
LYS
152
n
73
LYS
152
A
PRO
153
n
74
PRO
153
A
GLY
154
n
75
GLY
154
A
THR
155
n
76
THR
155
A
LEU
156
n
77
LEU
156
A
TYR
157
n
78
TYR
157
A
VAL
158
n
79
VAL
158
A
TYR
159
n
80
TYR
159
A
ILE
160
n
81
ILE
160
A
ILE
161
n
82
ILE
161
A
TYR
162
n
83
TYR
162
A
GLY
163
n
84
GLY
163
A
MET
164
n
85
MET
164
A
TYR
165
n
86
TYR
165
A
PHE
166
n
87
PHE
166
A
CYS
167
n
88
CYS
167
A
MET
168
n
89
MET
168
A
ASN
169
n
90
ASN
169
A
ILE
170
n
91
ILE
170
A
SER
171
n
92
SER
171
A
SER
172
n
93
SER
172
A
GLN
173
n
94
GLN
173
A
GLY
174
n
95
GLY
174
A
ASP
175
n
96
ASP
175
A
GLY
176
n
97
GLY
176
A
ALA
177
n
98
ALA
177
A
CYS
178
n
99
CYS
178
A
VAL
179
n
100
VAL
179
A
LEU
180
n
101
LEU
180
A
LEU
181
n
102
LEU
181
A
ARG
182
n
103
ARG
182
A
ALA
183
n
104
ALA
183
A
LEU
184
n
105
LEU
184
A
GLU
185
n
106
GLU
185
A
PRO
186
n
107
PRO
186
A
LEU
187
n
108
LEU
187
A
GLU
188
n
109
GLU
188
A
GLY
189
n
110
GLY
189
A
LEU
190
n
111
LEU
190
A
GLU
191
n
112
GLU
191
A
THR
192
n
113
THR
192
A
MET
193
n
114
MET
193
A
ARG
194
n
115
ARG
194
A
GLN
195
n
116
GLN
195
A
LEU
196
n
117
LEU
196
A
ARG
197
n
118
ARG
197
A
SER
198
n
119
SER
198
A
THR
199
n
120
THR
199
A
n
121
200
A
n
122
201
A
n
123
202
A
n
124
203
A
n
125
204
A
n
126
205
A
n
127
206
A
n
128
207
A
VAL
208
n
129
VAL
208
A
LEU
209
n
130
LEU
209
A
LYS
210
n
131
LYS
210
A
ASP
211
n
132
ASP
211
A
ARG
212
n
133
ARG
212
A
GLU
213
n
134
GLU
213
A
LEU
214
n
135
LEU
214
A
CYS
215
n
136
CYS
215
A
SER
216
n
137
SER
216
A
GLY
217
n
138
GLY
217
A
PRO
218
n
139
PRO
218
A
SER
219
n
140
SER
219
A
LYS
220
n
141
LYS
220
A
LEU
221
n
142
LEU
221
A
CYS
222
n
143
CYS
222
A
GLN
223
n
144
GLN
223
A
ALA
224
n
145
ALA
224
A
LEU
225
n
146
LEU
225
A
ALA
226
n
147
ALA
226
A
ILE
227
n
148
ILE
227
A
ASN
228
n
149
ASN
228
A
LYS
229
n
150
LYS
229
A
SER
230
n
151
SER
230
A
PHE
231
n
152
PHE
231
A
ASP
232
n
153
ASP
232
A
GLN
233
n
154
GLN
233
A
ARG
234
n
155
ARG
234
A
ASP
235
n
156
ASP
235
A
LEU
236
n
157
LEU
236
A
ALA
237
n
158
ALA
237
A
GLN
238
n
159
GLN
238
A
ASP
239
n
160
ASP
239
A
GLU
240
n
161
GLU
240
A
ALA
241
n
162
ALA
241
A
VAL
242
n
163
VAL
242
A
TRP
243
n
164
TRP
243
A
LEU
244
n
165
LEU
244
A
GLU
245
n
166
GLU
245
A
ARG
246
n
167
ARG
246
A
GLY
247
n
168
GLY
247
A
PRO
248
n
169
PRO
248
A
n
170
249
A
n
171
250
A
n
172
251
A
n
173
252
A
n
174
253
A
n
175
254
A
ALA
255
n
176
ALA
255
A
VAL
256
n
177
VAL
256
A
VAL
257
n
178
VAL
257
A
ALA
258
n
179
ALA
258
A
ALA
259
n
180
ALA
259
A
ALA
260
n
181
ALA
260
A
ARG
261
n
182
ARG
261
A
VAL
262
n
183
VAL
262
A
GLY
263
n
184
GLY
263
A
VAL
264
n
185
VAL
264
A
GLY
265
n
186
GLY
265
A
HIS
266
n
187
HIS
266
A
ALA
267
n
188
ALA
267
A
GLY
268
n
189
GLY
268
A
GLU
269
n
190
GLU
269
A
TRP
270
n
191
TRP
270
A
ALA
271
n
192
ALA
271
A
ARG
272
n
193
ARG
272
A
LYS
273
n
194
LYS
273
A
PRO
274
n
195
PRO
274
A
LEU
275
n
196
LEU
275
A
ARG
276
n
197
ARG
276
A
PHE
277
n
198
PHE
277
A
TYR
278
n
199
TYR
278
A
VAL
279
n
200
VAL
279
A
ARG
280
n
201
ARG
280
A
GLY
281
n
202
GLY
281
A
SER
282
n
203
SER
282
A
PRO
283
n
204
PRO
283
A
TRP
284
n
205
TRP
284
A
VAL
285
n
206
VAL
285
A
SER
286
n
207
SER
286
A
VAL
287
n
208
VAL
287
A
VAL
288
n
209
VAL
288
A
ASP
289
n
210
ASP
289
A
ARG
290
n
211
ARG
290
A
VAL
291
n
212
VAL
291
A
ALA
292
n
213
ALA
292
A
GLU
293
n
214
GLU
293
A
GLN
294
n
215
GLN
294
A
ASP
295
n
216
ASP
295
A
n
217
296
A
n
218
297
A
n
219
298
A
author_defined_assembly
3
trimeric
A
MET
149
C
O
MET
70
1_555
A
NA
501
D
NA
NA
1_555
A
SER
171
C
OG
SER
92
1_555
82.1
A
MET
149
C
O
MET
70
1_555
A
NA
501
D
NA
NA
1_555
A
SER
172
C
O
SER
93
1_555
168.8
A
SER
171
C
OG
SER
92
1_555
A
NA
501
D
NA
NA
1_555
A
SER
172
C
O
SER
93
1_555
89.1
A
MET
149
C
O
MET
70
1_555
A
NA
501
D
NA
NA
1_555
A
GLY
174
C
O
GLY
95
1_555
99.9
A
SER
171
C
OG
SER
92
1_555
A
NA
501
D
NA
NA
1_555
A
GLY
174
C
O
GLY
95
1_555
162.8
A
SER
172
C
O
SER
93
1_555
A
NA
501
D
NA
NA
1_555
A
GLY
174
C
O
GLY
95
1_555
86.5
A
MET
149
C
O
MET
70
1_555
A
NA
501
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
94.5
A
SER
171
C
OG
SER
92
1_555
A
NA
501
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
99.8
A
SER
172
C
O
SER
93
1_555
A
NA
501
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
93.9
A
GLY
174
C
O
GLY
95
1_555
A
NA
501
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
97.1
A
MET
149
C
O
MET
70
1_555
A
NA
501
D
NA
NA
1_555
A
HOH
541
G
O
HOH
1_555
85.7
A
SER
171
C
OG
SER
92
1_555
A
NA
501
D
NA
NA
1_555
A
HOH
541
G
O
HOH
1_555
80.7
A
SER
172
C
O
SER
93
1_555
A
NA
501
D
NA
NA
1_555
A
HOH
541
G
O
HOH
1_555
86.0
A
GLY
174
C
O
GLY
95
1_555
A
NA
501
D
NA
NA
1_555
A
HOH
541
G
O
HOH
1_555
82.4
A
ALA
177
C
O
ALA
98
1_555
A
NA
501
D
NA
NA
1_555
A
HOH
541
G
O
HOH
1_555
179.5
D
EDA
7
A
EDA
7
DA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
161
C
N
ILE
82
A
O
TYR
165
C
O
TYR
86
A
N
ILE
170
C
N
ILE
91
A
O
VAL
179
C
O
VAL
100
A
N
LEU
187
C
N
LEU
108
A
O
ARG
118
C
O
ARG
39
A
O
GLY
119
C
O
GLY
40
A
N
LEU
107
C
N
LEU
28
A
N
VAL
108
C
N
VAL
29
A
O
TRP
243
C
O
TRP
164
1
A
CG
HIS
82
C
CG
HIS
3
1
Y
1
A
ND1
HIS
82
C
ND1
HIS
3
1
Y
1
A
CD2
HIS
82
C
CD2
HIS
3
1
Y
1
A
CE1
HIS
82
C
CE1
HIS
3
1
Y
1
A
NE2
HIS
82
C
NE2
HIS
3
1
Y
1
A
CG
GLU
131
C
CG
GLU
52
1
Y
1
A
CD
GLU
131
C
CD
GLU
52
1
Y
1
A
OE1
GLU
131
C
OE1
GLU
52
1
Y
1
A
OE2
GLU
131
C
OE2
GLU
52
1
Y
1
A
OG1
THR
199
C
OG1
THR
120
1
Y
1
A
CG2
THR
199
C
CG2
THR
120
1
Y
1
A
CG1
VAL
208
C
CG1
VAL
129
1
Y
1
A
CG2
VAL
208
C
CG2
VAL
129
1
Y
1
A
CG
LYS
210
C
CG
LYS
131
1
Y
1
A
CD
LYS
210
C
CD
LYS
131
1
Y
1
A
CE
LYS
210
C
CE
LYS
131
1
Y
1
A
NZ
LYS
210
C
NZ
LYS
131
1
Y
1
A
CG
GLN
238
C
CG
GLN
159
1
Y
1
A
CD
GLN
238
C
CD
GLN
159
1
Y
1
A
OE1
GLN
238
C
OE1
GLN
159
1
Y
1
A
NE2
GLN
238
C
NE2
GLN
159
1
Y
1
A
CG
GLU
240
C
CG
GLU
161
1
Y
1
A
CD
GLU
240
C
CD
GLU
161
1
Y
1
A
OE1
GLU
240
C
OE1
GLU
161
1
Y
1
A
OE2
GLU
240
C
OE2
GLU
161
1
Y
1
A
CG
GLU
269
C
CG
GLU
190
1
Y
1
A
CD
GLU
269
C
CD
GLU
190
1
Y
1
A
OE1
GLU
269
C
OE1
GLU
190
1
Y
1
A
OE2
GLU
269
C
OE2
GLU
190
1
Y
1
A
LYS
80
C
LYS
1
1
Y
1
A
GLY
81
C
GLY
2
1
Y
1
A
LEU
200
C
LEU
121
1
Y
1
A
ARG
201
C
ARG
122
1
Y
1
A
LYS
202
C
LYS
123
1
Y
1
A
GLY
203
C
GLY
124
1
Y
1
A
THR
204
C
THR
125
1
Y
1
A
ALA
205
C
ALA
126
1
Y
1
A
SER
206
C
SER
127
1
Y
1
A
ARG
207
C
ARG
128
1
Y
1
A
LEU
249
C
LEU
170
1
Y
1
A
GLU
250
C
GLU
171
1
Y
1
A
PRO
251
C
PRO
172
1
Y
1
A
SER
252
C
SER
173
1
Y
1
A
GLU
253
C
GLU
174
1
Y
1
A
PRO
254
C
PRO
175
1
Y
1
A
THR
296
C
THR
217
1
Y
1
A
GLN
297
C
GLN
218
1
Y
1
A
ALA
298
C
ALA
219
1
Y
1
A
LEU
83
-19.98
-39.09
1
A
MET
164
-166.46
-26.75
1
A
GLN
238
-142.96
54.20
1
A
GLN
294
-84.95
34.57
Powell conjugate gradient minimization and torsion angle-restrained
molecular dynamics
0.2590000
0.2300000
2.1
500
1793
18433
18163
9.9
98.5
RANDOM
1
THROUGHOUT
2.0
1.0
Engh & Huber
2.1
500
80
2109
1
490
1538
1.22
0.006
39
2.1
500
1EWN
18433
18163
2.0
1.0
0.0420000
1
6.4
8
99.3
0.2010000
2.1
2.2
2183
8
97.8
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
GLY
87
C
GLY
8
HELX_P
A
ASP
92
C
ASP
13
1
1
6
A
PRO
94
C
PRO
15
HELX_P
A
LEU
103
C
LEU
24
1
2
10
A
SER
137
C
SER
58
HELX_P
A
ARG
141
C
ARG
62
5
3
5
A
ASN
146
C
ASN
67
HELX_P
A
MET
151
C
MET
72
5
4
6
A
GLY
189
C
GLY
110
HELX_P
A
ARG
197
C
ARG
118
1
5
9
A
LYS
210
C
LYS
131
HELX_P
A
LEU
214
C
LEU
135
5
6
5
A
GLY
217
C
GLY
138
HELX_P
A
LEU
225
C
LEU
146
1
7
9
A
ASN
228
C
ASN
149
HELX_P
A
ASP
232
C
ASP
153
5
8
5
covale
1.601
both
D
DG
6
A
O3'
DG
6
1_555
D
EDA
7
A
P
EDA
7
1_555
covale
1.610
both
D
EDA
7
A
O3'
EDA
7
1_555
D
DT
8
A
P
DT
8
1_555
metalc
2.481
A
MET
149
C
O
MET
70
1_555
A
NA
501
D
NA
NA
1_555
metalc
2.471
A
SER
171
C
OG
SER
92
1_555
A
NA
501
D
NA
NA
1_555
metalc
2.404
A
SER
172
C
O
SER
93
1_555
A
NA
501
D
NA
NA
1_555
metalc
2.441
A
GLY
174
C
O
GLY
95
1_555
A
NA
501
D
NA
NA
1_555
metalc
2.433
A
ALA
177
C
O
ALA
98
1_555
A
NA
501
D
NA
NA
1_555
metalc
2.602
A
NA
501
D
NA
NA
1_555
A
HOH
541
G
O
HOH
1_555
hydrog
WATSON-CRICK
D
DG
1
A
N1
DG
1
1_555
E
DC
25
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
1
A
N2
DG
1
1_555
E
DC
25
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
D
DG
1
A
O6
DG
1
1_555
E
DC
25
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
D
DA
2
A
N1
DA
2
1_555
E
DT
24
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
D
DA
2
A
N6
DA
2
1_555
E
DT
24
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
D
DC
3
A
N3
DC
3
1_555
E
DG
23
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
D
DC
3
A
N4
DC
3
1_555
E
DG
23
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
D
DC
3
A
O2
DC
3
1_555
E
DG
23
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N1
DA
4
1_555
E
DT
22
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N6
DA
4
1_555
E
DT
22
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
D
DT
5
A
N3
DT
5
1_555
E
DA
21
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
5
A
O4
DT
5
1_555
E
DA
21
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
D
DG
6
A
N1
DG
6
1_555
E
DC
20
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
6
A
N2
DG
6
1_555
E
DC
20
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
D
DG
6
A
O6
DG
6
1_555
E
DC
20
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
D
DT
8
A
N3
DT
8
1_555
E
DA
18
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
D
DT
8
A
O4
DT
8
1_555
E
DA
18
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
D
DT
9
A
N3
DT
9
1_555
E
DA
17
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
D
DT
9
A
O4
DT
9
1_555
E
DA
17
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N1
DG
10
1_555
E
DC
16
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N2
DG
10
1_555
E
DC
16
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
D
DG
10
A
O6
DG
10
1_555
E
DC
16
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N3
DC
11
1_555
E
DG
15
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N4
DC
11
1_555
E
DG
15
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
11
A
O2
DC
11
1_555
E
DG
15
B
N2
DG
1
1_555
hydrolase/DNA
DNA repair, glycosylase, AAG, ANPG, MPG, 3-methyladenine DNA glycosylase, hydrolase-DNA COMPLEX
3MG_HUMAN
UNP
3
80
P29372
1EWN
PDB
1
1EWN
1EWN
PDB
2
1EWN
80
298
1EWN
80
298
P29372
A
1
1
219
1
12
1EWN
1
12
1EWN
D
2
1
12
15
26
1EWN
15
26
1EWN
E
3
1
12
1
GLU
engineered mutation
GLN
125
1EWN
A
P29372
UNP
125
46
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
156
C
LEU
77
A
ILE
161
C
ILE
82
A
TYR
165
C
TYR
86
A
SER
171
C
SER
92
A
CYS
178
C
CYS
99
A
GLU
188
C
GLU
109
A
GLU
116
C
GLU
37
A
TYR
127
C
TYR
48
A
VAL
106
C
VAL
27
A
ARG
110
C
ARG
31
A
VAL
242
C
VAL
163
A
GLU
245
C
GLU
166
BINDING SITE FOR RESIDUE NA A 501
A
NA
501
Software
6
A
MET
149
C
MET
70
6
1_555
A
SER
171
C
SER
92
6
1_555
A
SER
172
C
SER
93
6
1_555
A
GLY
174
C
GLY
95
6
1_555
A
ALA
177
C
ALA
98
6
1_555
A
HOH
541
G
HOH
6
1_555
19
orthorhombic
P 21 21 21