0.019753
0.000000
0.000000
0.000000
0.019753
0.000000
0.000000
0.000000
0.006438
0.000000
0.000000
0.000000
Blaszczyk, J.
0000-0001-6942-1514
Ji, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.625
50.625
155.327
C10 H14 N5 O8 P
363.221
GUANOSINE-5'-MONOPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
N
18
N
C
N
19
N
O
N
20
N
N
N
21
N
C
N
22
N
N
N
23
N
N
Y
24
N
C
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
N
N
53
S
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
N
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
R
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
S
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
N
C
Y
180
N
C
Y
181
N
N
Y
182
N
C
Y
183
N
C
Y
184
N
N
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
S
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
N
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
N
273
N
C
N
274
N
S
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
S
N
343
N
O
N
344
N
O
N
345
N
O
N
346
N
O
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
N
30
N
sing
Y
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
Y
180
N
sing
Y
181
N
doub
Y
182
N
doub
N
183
N
sing
Y
184
N
sing
N
185
N
sing
Y
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
Y
288
N
doub
Y
289
N
sing
Y
290
N
sing
N
291
N
sing
Y
292
N
doub
N
293
N
sing
Y
294
N
doub
N
295
N
sing
Y
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
307
247
257
10.1006/jmbi.2000.4427
11243817
Crystal structure of unligated guanylate kinase from yeast reveals GMP-induced conformational changes.
2001
0000-0001-6942-1514
10.2210/pdb1ex7/pdb
pdb_00001ex7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
293
1
MIRROR
IMAGE PLATE
1996-12-05
MAC Science DIP-2000
SINGLE WAVELENGTH
M
x-ray
1
1.54178
1.0
1.54178
ROTATING ANODE
ENRAF-NONIUS FR591
20533.152
GUANYLATE KINASE
2.7.4.8
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
363.221
GUANOSINE-5'-MONOPHOSPHATE
1
syn
non-polymer
18.015
water
208
nat
water
no
no
SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS
TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETG
AHDKVIVNDDLDKAYKELKDFIFAEK
SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS
TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETG
AHDKVIVNDDLDKAYKELKDFIFAEK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
4932
Saccharomyces cerevisiae
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET17B
1
2.30
44.0
VAPOR DIFFUSION, HANGING DROP
5.5
ammonium sulfate, sodium phosphate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
292
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
audit_author
citation_author
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
Database references
Structure summary
1
0
2001-03-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-09
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
1GKY is the crystal structure of a complex of N-acetylated
guanylate kinase from yeast with GMP
1EX6 is the crystal structure of unliganded guanylate kinase from yeast
RCSB
Y
RCSB
2000-05-01
REL
REL
SO4
SULFATE ION
5GP
GUANOSINE-5'-MONOPHOSPHATE
HOH
water
1GKY
PDB
experimental model
SO4
188
2
SO4
SO4
188
A
SO4
189
2
SO4
SO4
189
A
5GP
187
3
5GP
5GP
187
A
HOH
201
4
HOH
HOH
201
A
HOH
202
4
HOH
HOH
202
A
HOH
203
4
HOH
HOH
203
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
209
4
HOH
HOH
209
A
HOH
210
4
HOH
HOH
210
A
HOH
211
4
HOH
HOH
211
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
215
4
HOH
HOH
215
A
HOH
216
4
HOH
HOH
216
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
220
4
HOH
HOH
220
A
HOH
221
4
HOH
HOH
221
A
HOH
222
4
HOH
HOH
222
A
HOH
223
4
HOH
HOH
223
A
HOH
224
4
HOH
HOH
224
A
HOH
225
4
HOH
HOH
225
A
HOH
226
4
HOH
HOH
226
A
HOH
227
4
HOH
HOH
227
A
HOH
228
4
HOH
HOH
228
A
HOH
229
4
HOH
HOH
229
A
HOH
230
4
HOH
HOH
230
A
HOH
231
4
HOH
HOH
231
A
HOH
232
4
HOH
HOH
232
A
HOH
233
4
HOH
HOH
233
A
HOH
234
4
HOH
HOH
234
A
HOH
235
4
HOH
HOH
235
A
HOH
236
4
HOH
HOH
236
A
HOH
237
4
HOH
HOH
237
A
HOH
238
4
HOH
HOH
238
A
HOH
239
4
HOH
HOH
239
A
HOH
240
4
HOH
HOH
240
A
HOH
241
4
HOH
HOH
241
A
HOH
242
4
HOH
HOH
242
A
HOH
243
4
HOH
HOH
243
A
HOH
244
4
HOH
HOH
244
A
HOH
245
4
HOH
HOH
245
A
HOH
246
4
HOH
HOH
246
A
HOH
247
4
HOH
HOH
247
A
HOH
248
4
HOH
HOH
248
A
HOH
249
4
HOH
HOH
249
A
HOH
250
4
HOH
HOH
250
A
HOH
251
4
HOH
HOH
251
A
HOH
252
4
HOH
HOH
252
A
HOH
253
4
HOH
HOH
253
A
HOH
254
4
HOH
HOH
254
A
HOH
255
4
HOH
HOH
255
A
HOH
256
4
HOH
HOH
256
A
HOH
257
4
HOH
HOH
257
A
HOH
258
4
HOH
HOH
258
A
HOH
259
4
HOH
HOH
259
A
HOH
260
4
HOH
HOH
260
A
HOH
261
4
HOH
HOH
261
A
HOH
262
4
HOH
HOH
262
A
HOH
263
4
HOH
HOH
263
A
HOH
264
4
HOH
HOH
264
A
HOH
265
4
HOH
HOH
265
A
HOH
266
4
HOH
HOH
266
A
HOH
267
4
HOH
HOH
267
A
HOH
268
4
HOH
HOH
268
A
HOH
269
4
HOH
HOH
269
A
HOH
270
4
HOH
HOH
270
A
HOH
271
4
HOH
HOH
271
A
HOH
272
4
HOH
HOH
272
A
HOH
273
4
HOH
HOH
273
A
HOH
274
4
HOH
HOH
274
A
HOH
275
4
HOH
HOH
275
A
HOH
276
4
HOH
HOH
276
A
HOH
277
4
HOH
HOH
277
A
HOH
278
4
HOH
HOH
278
A
HOH
279
4
HOH
HOH
279
A
HOH
280
4
HOH
HOH
280
A
HOH
281
4
HOH
HOH
281
A
HOH
282
4
HOH
HOH
282
A
HOH
283
4
HOH
HOH
283
A
HOH
284
4
HOH
HOH
284
A
HOH
285
4
HOH
HOH
285
A
HOH
286
4
HOH
HOH
286
A
HOH
287
4
HOH
HOH
287
A
HOH
288
4
HOH
HOH
288
A
HOH
289
4
HOH
HOH
289
A
HOH
290
4
HOH
HOH
290
A
HOH
291
4
HOH
HOH
291
A
HOH
292
4
HOH
HOH
292
A
HOH
293
4
HOH
HOH
293
A
HOH
294
4
HOH
HOH
294
A
HOH
295
4
HOH
HOH
295
A
HOH
296
4
HOH
HOH
296
A
HOH
297
4
HOH
HOH
297
A
HOH
298
4
HOH
HOH
298
A
HOH
299
4
HOH
HOH
299
A
HOH
300
4
HOH
HOH
300
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
376
4
HOH
HOH
376
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
400
4
HOH
HOH
400
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
SER
1
n
1
SER
1
A
ARG
2
n
2
ARG
2
A
PRO
3
n
3
PRO
3
A
ILE
4
n
4
ILE
4
A
VAL
5
n
5
VAL
5
A
ILE
6
n
6
ILE
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
PRO
9
n
9
PRO
9
A
SER
10
n
10
SER
10
A
GLY
11
n
11
GLY
11
A
THR
12
n
12
THR
12
A
GLY
13
n
13
GLY
13
A
LYS
14
n
14
LYS
14
A
SER
15
n
15
SER
15
A
THR
16
n
16
THR
16
A
LEU
17
n
17
LEU
17
A
LEU
18
n
18
LEU
18
A
LYS
19
n
19
LYS
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
PHE
22
n
22
PHE
22
A
ALA
23
n
23
ALA
23
A
GLU
24
n
24
GLU
24
A
TYR
25
n
25
TYR
25
A
PRO
26
n
26
PRO
26
A
ASP
27
n
27
ASP
27
A
SER
28
n
28
SER
28
A
PHE
29
n
29
PHE
29
A
GLY
30
n
30
GLY
30
A
PHE
31
n
31
PHE
31
A
SER
32
n
32
SER
32
A
VAL
33
n
33
VAL
33
A
SER
34
n
34
SER
34
A
SER
35
n
35
SER
35
A
THR
36
n
36
THR
36
A
THR
37
n
37
THR
37
A
ARG
38
n
38
ARG
38
A
THR
39
n
39
THR
39
A
PRO
40
n
40
PRO
40
A
ARG
41
n
41
ARG
41
A
ALA
42
n
42
ALA
42
A
GLY
43
n
43
GLY
43
A
GLU
44
n
44
GLU
44
A
VAL
45
n
45
VAL
45
A
ASN
46
n
46
ASN
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
ASP
49
n
49
ASP
49
A
TYR
50
n
50
TYR
50
A
ASN
51
n
51
ASN
51
A
PHE
52
n
52
PHE
52
A
VAL
53
n
53
VAL
53
A
SER
54
n
54
SER
54
A
VAL
55
n
55
VAL
55
A
ASP
56
n
56
ASP
56
A
GLU
57
n
57
GLU
57
A
PHE
58
n
58
PHE
58
A
LYS
59
n
59
LYS
59
A
SER
60
n
60
SER
60
A
MET
61
n
61
MET
61
A
ILE
62
n
62
ILE
62
A
LYS
63
n
63
LYS
63
A
ASN
64
n
64
ASN
64
A
ASN
65
n
65
ASN
65
A
GLU
66
n
66
GLU
66
A
PHE
67
n
67
PHE
67
A
ILE
68
n
68
ILE
68
A
GLU
69
n
69
GLU
69
A
TRP
70
n
70
TRP
70
A
ALA
71
n
71
ALA
71
A
GLN
72
n
72
GLN
72
A
PHE
73
n
73
PHE
73
A
SER
74
n
74
SER
74
A
GLY
75
n
75
GLY
75
A
ASN
76
n
76
ASN
76
A
TYR
77
n
77
TYR
77
A
TYR
78
n
78
TYR
78
A
GLY
79
n
79
GLY
79
A
SER
80
n
80
SER
80
A
THR
81
n
81
THR
81
A
VAL
82
n
82
VAL
82
A
ALA
83
n
83
ALA
83
A
SER
84
n
84
SER
84
A
VAL
85
n
85
VAL
85
A
LYS
86
n
86
LYS
86
A
GLN
87
n
87
GLN
87
A
VAL
88
n
88
VAL
88
A
SER
89
n
89
SER
89
A
LYS
90
n
90
LYS
90
A
SER
91
n
91
SER
91
A
GLY
92
n
92
GLY
92
A
LYS
93
n
93
LYS
93
A
THR
94
n
94
THR
94
A
CYS
95
n
95
CYS
95
A
ILE
96
n
96
ILE
96
A
LEU
97
n
97
LEU
97
A
ASP
98
n
98
ASP
98
A
ILE
99
n
99
ILE
99
A
ASP
100
n
100
ASP
100
A
MET
101
n
101
MET
101
A
GLN
102
n
102
GLN
102
A
GLY
103
n
103
GLY
103
A
VAL
104
n
104
VAL
104
A
LYS
105
n
105
LYS
105
A
SER
106
n
106
SER
106
A
VAL
107
n
107
VAL
107
A
LYS
108
n
108
LYS
108
A
ALA
109
n
109
ALA
109
A
ILE
110
n
110
ILE
110
A
PRO
111
n
111
PRO
111
A
GLU
112
n
112
GLU
112
A
LEU
113
n
113
LEU
113
A
ASN
114
n
114
ASN
114
A
ALA
115
n
115
ALA
115
A
ARG
116
n
116
ARG
116
A
PHE
117
n
117
PHE
117
A
LEU
118
n
118
LEU
118
A
PHE
119
n
119
PHE
119
A
ILE
120
n
120
ILE
120
A
ALA
121
n
121
ALA
121
A
PRO
122
n
122
PRO
122
A
PRO
123
n
123
PRO
123
A
SER
124
n
124
SER
124
A
VAL
125
n
125
VAL
125
A
GLU
126
n
126
GLU
126
A
ASP
127
n
127
ASP
127
A
LEU
128
n
128
LEU
128
A
LYS
129
n
129
LYS
129
A
LYS
130
n
130
LYS
130
A
ARG
131
n
131
ARG
131
A
LEU
132
n
132
LEU
132
A
GLU
133
n
133
GLU
133
A
GLY
134
n
134
GLY
134
A
ARG
135
n
135
ARG
135
A
GLY
136
n
136
GLY
136
A
THR
137
n
137
THR
137
A
GLU
138
n
138
GLU
138
A
THR
139
n
139
THR
139
A
GLU
140
n
140
GLU
140
A
GLU
141
n
141
GLU
141
A
SER
142
n
142
SER
142
A
ILE
143
n
143
ILE
143
A
ASN
144
n
144
ASN
144
A
LYS
145
n
145
LYS
145
A
ARG
146
n
146
ARG
146
A
LEU
147
n
147
LEU
147
A
SER
148
n
148
SER
148
A
ALA
149
n
149
ALA
149
A
ALA
150
n
150
ALA
150
A
GLN
151
n
151
GLN
151
A
ALA
152
n
152
ALA
152
A
GLU
153
n
153
GLU
153
A
LEU
154
n
154
LEU
154
A
ALA
155
n
155
ALA
155
A
TYR
156
n
156
TYR
156
A
ALA
157
n
157
ALA
157
A
GLU
158
n
158
GLU
158
A
THR
159
n
159
THR
159
A
GLY
160
n
160
GLY
160
A
ALA
161
n
161
ALA
161
A
HIS
162
n
162
HIS
162
A
ASP
163
n
163
ASP
163
A
LYS
164
n
164
LYS
164
A
VAL
165
n
165
VAL
165
A
ILE
166
n
166
ILE
166
A
VAL
167
n
167
VAL
167
A
ASN
168
n
168
ASN
168
A
ASP
169
n
169
ASP
169
A
ASP
170
n
170
ASP
170
A
LEU
171
n
171
LEU
171
A
ASP
172
n
172
ASP
172
A
LYS
173
n
173
LYS
173
A
ALA
174
n
174
ALA
174
A
TYR
175
n
175
TYR
175
A
LYS
176
n
176
LYS
176
A
GLU
177
n
177
GLU
177
A
LEU
178
n
178
LEU
178
A
LYS
179
n
179
LYS
179
A
ASP
180
n
180
ASP
180
A
PHE
181
n
181
PHE
181
A
ILE
182
n
182
ILE
182
A
PHE
183
n
183
PHE
183
A
ALA
184
n
184
ALA
184
A
GLU
185
n
185
GLU
185
A
LYS
186
n
186
LYS
186
A
0.1560000
0.1700000
0.2450000
0.2570000
1304
11.231
11.111
11611
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
30
A
N
GLY
30
A
O
THR
94
A
O
THR
94
A
N
LEU
97
A
N
LEU
97
A
O
ILE
4
A
O
ILE
4
A
N
VAL
5
A
N
VAL
5
A
O
ARG
116
A
O
ARG
116
A
N
PHE
119
A
N
PHE
119
A
O
LYS
164
A
O
LYS
164
A
O
ASN
51
A
O
ASN
51
A
N
THR
36
A
N
THR
36
A
N
SER
35
A
N
SER
35
A
O
GLY
79
A
O
GLY
79
A
O
SER
80
A
O
SER
80
A
N
ILE
68
A
N
ILE
68
1
-3.38
0.50
120.30
116.92
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
38
38
38
N
1
-5.53
0.60
121.00
115.47
A
A
A
CB
CG
CD2
TYR
TYR
TYR
78
78
78
N
1
3.92
0.60
121.00
124.92
A
A
A
CB
CG
CD1
TYR
TYR
TYR
78
78
78
N
1
-4.72
0.50
120.30
115.58
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
116
116
116
N
1
A
LYS
48
-121.63
-51.99
1
A
ILE
110
-118.82
72.60
1
A
ASP
170
-177.84
120.86
1
A
GLU
185
102.54
-49.19
Least-squares refinement using the Konnert-Hendrickson conjugate-gradient algorithm
0.2570000
0.1701000
0.1701000
1.90
15.00
6733
1575
14174
11611
6051
11.111
84.7
RANDOM
1
FREE R
4.0
2.0
REFINEMENT OF THE MODEL
1GKY
ENGH AND HUBER
MOEWS & KRETSINGER, J.MOL.BIOL.91(1975)201-228
0.
1688.
1.90
15.00
208
1688
34
0
1446
0.010
0.033
0.000
0.021
0.035
0.044
0.013
0.000
0.085
0.000
33.5
1.9
15.0
1EX7
15836
15836
0.0
0.0
0.0950000
1
14.6
4.60
94.4
0.3780000
1.90
1.93
1.8455
716
3.8
86.9
model building
X-PLOR
refinement
SHELXL-97
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
CRYSTAL STRUCTURE OF YEAST GUANYLATE KINASE IN COMPLEX WITH GUANOSINE-5'-MONOPHOSPHATE
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
GLY
13
A
GLY
13
HELX_P
A
TYR
25
A
TYR
25
1
1
13
A
SER
54
A
SER
54
HELX_P
A
ASN
64
A
ASN
64
1
2
11
A
VAL
82
A
VAL
82
HELX_P
A
GLY
92
A
GLY
92
1
3
11
A
ASP
100
A
ASP
100
HELX_P
A
ALA
109
A
ALA
109
1
4
10
A
ILE
110
A
ILE
110
HELX_P
A
ASN
114
A
ASN
114
5
5
5
A
SER
124
A
SER
124
HELX_P
A
GLY
136
A
GLY
136
1
6
13
A
THR
139
A
THR
139
HELX_P
A
GLU
158
A
GLU
158
1
7
20
A
ASP
170
A
ASP
170
HELX_P
A
PHE
183
A
PHE
183
1
8
14
TRANSFERASE
GUANYLATE KINASE, SUBSTRATE-INDUCED FIT, DOMAIN MOVEMENT, GMP, ATP, SUBSTRATE SPECIFICITY, TRANSFERASE
KGUA_YEAST
UNP
1
P15454
1
186
1EX7
1
186
P15454
A
1
1
186
5
4
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
PHE
29
A
PHE
29
A
PHE
31
A
PHE
31
A
THR
94
A
THR
94
A
ASP
98
A
ASP
98
A
ILE
4
A
ILE
4
A
SER
7
A
SER
7
A
ARG
116
A
ARG
116
A
ALA
121
A
ALA
121
A
LYS
164
A
LYS
164
A
VAL
167
A
VAL
167
A
ASN
51
A
ASN
51
A
PHE
52
A
PHE
52
A
SER
35
A
SER
35
A
THR
36
A
THR
36
A
ASN
76
A
ASN
76
A
THR
81
A
THR
81
A
PHE
67
A
PHE
67
A
PHE
73
A
PHE
73
BINDING SITE FOR RESIDUE SO4 A 188
A
SO4
188
Software
8
BINDING SITE FOR RESIDUE SO4 A 189
A
SO4
189
Software
9
BINDING SITE FOR RESIDUE 5GP A 187
A
5GP
187
Software
15
A
THR
12
A
THR
12
8
4_465
A
GLY
13
A
GLY
13
8
4_465
A
SER
60
A
SER
60
8
1_555
A
LYS
63
A
LYS
63
8
1_555
A
ASN
168
A
ASN
168
8
4_465
A
LEU
171
A
LEU
171
8
4_465
A
HOH
230
E
HOH
8
1_555
A
HOH
235
E
HOH
8
1_555
A
SER
10
A
SER
10
9
1_555
A
GLY
11
A
GLY
11
9
1_555
A
THR
12
A
THR
12
9
1_555
A
GLY
13
A
GLY
13
9
1_555
A
LYS
14
A
LYS
14
9
1_555
A
SER
15
A
SER
15
9
1_555
A
ARG
135
A
ARG
135
9
1_555
A
HOH
253
E
HOH
9
1_555
A
HOH
329
E
HOH
9
1_555
A
SER
34
A
SER
34
15
1_555
A
ARG
38
A
ARG
38
15
1_555
A
ARG
41
A
ARG
41
15
1_555
A
TYR
50
A
TYR
50
15
1_555
A
GLU
69
A
GLU
69
15
1_555
A
TYR
78
A
TYR
78
15
1_555
A
GLY
79
A
GLY
79
15
1_555
A
SER
80
A
SER
80
15
1_555
A
ILE
99
A
ILE
99
15
1_555
A
ASP
100
A
ASP
100
15
1_555
A
GLY
103
A
GLY
103
15
1_555
A
HOH
213
E
HOH
15
1_555
A
HOH
248
E
HOH
15
1_555
A
HOH
344
E
HOH
15
1_555
A
HOH
390
E
HOH
15
1_555
96
P 43 21 2