0.014480
0.000000
0.000000
0.000000
0.014480
0.000000
0.000000
0.000000
0.007811
0.00000
0.00000
0.00000
Bellizzi III, J.J.
Clardy, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
69.060
69.060
128.030
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C16 H34 O3 S
306.504
1-HEXADECANOSULFONIC ACID
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
23847
23851
10.1074/jbc.M002758200
10801859
Structural basis for the insensitivity of a serine enzyme (palmitoyl-protein thioesterase) to phenylmethylsulfonyl fluoride.
2000
NAG B 1 HAS WRONG CHIRALITY AT ATOM C1
NAG A 400 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1999-02-14
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9100
1.0
A1
CHESS
0.9100
SYNCHROTRON
CHESS BEAMLINE A1
31447.111
PALMITOYL PROTEIN THIOESTERASE 1
3.1.2.22
1
man
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
non-polymer
306.504
1-HEXADECANOSULFONIC ACID
1
syn
non-polymer
18.015
water
40
nat
water
no
no
DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ
GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH
DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD
RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE
DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ
GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH
DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD
RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
9913
Bos taurus
SF21 CELLS
10469
unidentified baculovirus
1
2.43
49.30
VAPOR DIFFUSION, SITTING DROP
6.5
55% PPG 400, 0.1 M Bis Tris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 20K
293.0
software
citation_author
citation_author
exptl_crystal_grow
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Database references
Database references
Experimental preparation
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2000-08-02
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2018-01-24
1
5
2018-01-31
2
0
2020-07-29
_software.name
_citation_author.name
_citation_author.name
_exptl_crystal_grow.pdbx_details
_exptl_crystal_grow.temp
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_seq_id
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
A
NAG
420
n
B
NAG
1
A
NAG
421
n
B
NAG
2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Crystal Structure of Palmitoyl Protein Thioesterase 1
Crystal Structure of Palmitoyl Protein Thioesterase 1 Complexed with Palmitate
RCSB
Y
RCSB
2000-05-04
REL
REL
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HDS
1-HEXADECANOSULFONIC ACID
HOH
water
NAG
400
3
NAG
NAG
400
A
NAG
410
3
NAG
NAG
410
A
HDS
430
4
HDS
HDS
430
A
WAT
500
5
HOH
HOH
500
A
WAT
501
5
HOH
HOH
501
A
WAT
502
5
HOH
HOH
502
A
WAT
503
5
HOH
HOH
503
A
WAT
504
5
HOH
HOH
504
A
WAT
505
5
HOH
HOH
505
A
WAT
506
5
HOH
HOH
506
A
WAT
507
5
HOH
HOH
507
A
WAT
508
5
HOH
HOH
508
A
WAT
509
5
HOH
HOH
509
A
WAT
510
5
HOH
HOH
510
A
WAT
511
5
HOH
HOH
511
A
WAT
512
5
HOH
HOH
512
A
WAT
513
5
HOH
HOH
513
A
WAT
514
5
HOH
HOH
514
A
WAT
515
5
HOH
HOH
515
A
WAT
516
5
HOH
HOH
516
A
WAT
517
5
HOH
HOH
517
A
WAT
518
5
HOH
HOH
518
A
WAT
519
5
HOH
HOH
519
A
WAT
520
5
HOH
HOH
520
A
WAT
521
5
HOH
HOH
521
A
WAT
522
5
HOH
HOH
522
A
WAT
523
5
HOH
HOH
523
A
WAT
524
5
HOH
HOH
524
A
WAT
525
5
HOH
HOH
525
A
WAT
526
5
HOH
HOH
526
A
WAT
527
5
HOH
HOH
527
A
WAT
528
5
HOH
HOH
528
A
WAT
529
5
HOH
HOH
529
A
WAT
530
5
HOH
HOH
530
A
WAT
531
5
HOH
HOH
531
A
WAT
532
5
HOH
HOH
532
A
WAT
533
5
HOH
HOH
533
A
WAT
534
5
HOH
HOH
534
A
WAT
535
5
HOH
HOH
535
A
WAT
536
5
HOH
HOH
536
A
WAT
537
5
HOH
HOH
537
A
WAT
538
5
HOH
HOH
538
A
WAT
539
5
HOH
HOH
539
A
ASP
28
n
1
ASP
28
A
PRO
29
n
2
PRO
29
A
PRO
30
n
3
PRO
30
A
ALA
31
n
4
ALA
31
A
PRO
32
n
5
PRO
32
A
LEU
33
n
6
LEU
33
A
PRO
34
n
7
PRO
34
A
LEU
35
n
8
LEU
35
A
VAL
36
n
9
VAL
36
A
ILE
37
n
10
ILE
37
A
TRP
38
n
11
TRP
38
A
HIS
39
n
12
HIS
39
A
GLY
40
n
13
GLY
40
A
MET
41
n
14
MET
41
A
GLY
42
n
15
GLY
42
A
ASP
43
n
16
ASP
43
A
SER
44
n
17
SER
44
A
CYS
45
n
18
CYS
45
A
CYS
46
n
19
CYS
46
A
ASN
47
n
20
ASN
47
A
PRO
48
n
21
PRO
48
A
LEU
49
n
22
LEU
49
A
SER
50
n
23
SER
50
A
MET
51
n
24
MET
51
A
GLY
52
n
25
GLY
52
A
ALA
53
n
26
ALA
53
A
ILE
54
n
27
ILE
54
A
LYS
55
n
28
LYS
55
A
LYS
56
n
29
LYS
56
A
MET
57
n
30
MET
57
A
VAL
58
n
31
VAL
58
A
GLU
59
n
32
GLU
59
A
LYS
60
n
33
LYS
60
A
LYS
61
n
34
LYS
61
A
ILE
62
n
35
ILE
62
A
PRO
63
n
36
PRO
63
A
GLY
64
n
37
GLY
64
A
ILE
65
n
38
ILE
65
A
HIS
66
n
39
HIS
66
A
VAL
67
n
40
VAL
67
A
LEU
68
n
41
LEU
68
A
SER
69
n
42
SER
69
A
LEU
70
n
43
LEU
70
A
GLU
71
n
44
GLU
71
A
ILE
72
n
45
ILE
72
A
GLY
73
n
46
GLY
73
A
LYS
74
n
47
LYS
74
A
THR
75
n
48
THR
75
A
LEU
76
n
49
LEU
76
A
ARG
77
n
50
ARG
77
A
GLU
78
n
51
GLU
78
A
ASP
79
n
52
ASP
79
A
VAL
80
n
53
VAL
80
A
GLU
81
n
54
GLU
81
A
ASN
82
n
55
ASN
82
A
SER
83
n
56
SER
83
A
PHE
84
n
57
PHE
84
A
PHE
85
n
58
PHE
85
A
LEU
86
n
59
LEU
86
A
ASN
87
n
60
ASN
87
A
VAL
88
n
61
VAL
88
A
ASN
89
n
62
ASN
89
A
SER
90
n
63
SER
90
A
GLN
91
n
64
GLN
91
A
VAL
92
n
65
VAL
92
A
THR
93
n
66
THR
93
A
THR
94
n
67
THR
94
A
VAL
95
n
68
VAL
95
A
CYS
96
n
69
CYS
96
A
GLN
97
n
70
GLN
97
A
ILE
98
n
71
ILE
98
A
LEU
99
n
72
LEU
99
A
ALA
100
n
73
ALA
100
A
LYS
101
n
74
LYS
101
A
ASP
102
n
75
ASP
102
A
PRO
103
n
76
PRO
103
A
LYS
104
n
77
LYS
104
A
LEU
105
n
78
LEU
105
A
GLN
106
n
79
GLN
106
A
GLN
107
n
80
GLN
107
A
GLY
108
n
81
GLY
108
A
TYR
109
n
82
TYR
109
A
ASN
110
n
83
ASN
110
A
ALA
111
n
84
ALA
111
A
MET
112
n
85
MET
112
A
GLY
113
n
86
GLY
113
A
PHE
114
n
87
PHE
114
A
SER
115
n
88
SER
115
A
GLN
116
n
89
GLN
116
A
GLY
117
n
90
GLY
117
A
GLY
118
n
91
GLY
118
A
GLN
119
n
92
GLN
119
A
PHE
120
n
93
PHE
120
A
LEU
121
n
94
LEU
121
A
ARG
122
n
95
ARG
122
A
ALA
123
n
96
ALA
123
A
VAL
124
n
97
VAL
124
A
ALA
125
n
98
ALA
125
A
GLN
126
n
99
GLN
126
A
ARG
127
n
100
ARG
127
A
CYS
128
n
101
CYS
128
A
PRO
129
n
102
PRO
129
A
SER
130
n
103
SER
130
A
CPR
131
n
104
PRO
131
A
PRO
132
n
105
PRO
132
A
MET
133
n
106
MET
133
A
VAL
134
n
107
VAL
134
A
ASN
135
n
108
ASN
135
A
LEU
136
n
109
LEU
136
A
ILE
137
n
110
ILE
137
A
SER
138
n
111
SER
138
A
VAL
139
n
112
VAL
139
A
GLY
140
n
113
GLY
140
A
GLY
141
n
114
GLY
141
A
GLN
142
n
115
GLN
142
A
HIS
143
n
116
HIS
143
A
GLN
144
n
117
GLN
144
A
GLY
145
n
118
GLY
145
A
VAL
146
n
119
VAL
146
A
PHE
147
n
120
PHE
147
A
GLY
148
n
121
GLY
148
A
LEU
149
n
122
LEU
149
A
PRO
150
n
123
PRO
150
A
ARG
151
n
124
ARG
151
A
CYS
152
n
125
CYS
152
A
PRO
153
n
126
PRO
153
A
GLY
154
n
127
GLY
154
A
GLU
155
n
128
GLU
155
A
SER
156
n
129
SER
156
A
SER
157
n
130
SER
157
A
HIS
158
n
131
HIS
158
A
ILE
159
n
132
ILE
159
A
CYS
160
n
133
CYS
160
A
ASP
161
n
134
ASP
161
A
PHE
162
n
135
PHE
162
A
ILE
163
n
136
ILE
163
A
ARG
164
n
137
ARG
164
A
LYS
165
n
138
LYS
165
A
THR
166
n
139
THR
166
A
LEU
167
n
140
LEU
167
A
ASN
168
n
141
ASN
168
A
ALA
169
n
142
ALA
169
A
GLY
170
n
143
GLY
170
A
ALA
171
n
144
ALA
171
A
TYR
172
n
145
TYR
172
A
ASN
173
n
146
ASN
173
A
LYS
174
n
147
LYS
174
A
ALA
175
n
148
ALA
175
A
ILE
176
n
149
ILE
176
A
GLN
177
n
150
GLN
177
A
GLU
178
n
151
GLU
178
A
ARG
179
n
152
ARG
179
A
LEU
180
n
153
LEU
180
A
VAL
181
n
154
VAL
181
A
GLN
182
n
155
GLN
182
A
ALA
183
n
156
ALA
183
A
GLU
184
n
157
GLU
184
A
TYR
185
n
158
TYR
185
A
TRP
186
n
159
TRP
186
A
HIS
187
n
160
HIS
187
A
ASP
188
n
161
ASP
188
A
PRO
189
n
162
PRO
189
A
ILE
190
n
163
ILE
190
A
ARG
191
n
164
ARG
191
A
GLU
192
n
165
GLU
192
A
ASP
193
n
166
ASP
193
A
ILE
194
n
167
ILE
194
A
TYR
195
n
168
TYR
195
A
ARG
196
n
169
ARG
196
A
ASN
197
n
170
ASN
197
A
HIS
198
n
171
HIS
198
A
SER
199
n
172
SER
199
A
ILE
200
n
173
ILE
200
A
PHE
201
n
174
PHE
201
A
LEU
202
n
175
LEU
202
A
ALA
203
n
176
ALA
203
A
ASP
204
n
177
ASP
204
A
ILE
205
n
178
ILE
205
A
ASN
206
n
179
ASN
206
A
GLN
207
n
180
GLN
207
A
GLU
208
n
181
GLU
208
A
ARG
209
n
182
ARG
209
A
GLY
210
n
183
GLY
210
A
VAL
211
n
184
VAL
211
A
ASN
212
n
185
ASN
212
A
GLU
213
n
186
GLU
213
A
SER
214
n
187
SER
214
A
TYR
215
n
188
TYR
215
A
LYS
216
n
189
LYS
216
A
LYS
217
n
190
LYS
217
A
ASN
218
n
191
ASN
218
A
LEU
219
n
192
LEU
219
A
MET
220
n
193
MET
220
A
ALA
221
n
194
ALA
221
A
LEU
222
n
195
LEU
222
A
LYS
223
n
196
LYS
223
A
LYS
224
n
197
LYS
224
A
PHE
225
n
198
PHE
225
A
VAL
226
n
199
VAL
226
A
MET
227
n
200
MET
227
A
VAL
228
n
201
VAL
228
A
LYS
229
n
202
LYS
229
A
PHE
230
n
203
PHE
230
A
LEU
231
n
204
LEU
231
A
ASN
232
n
205
ASN
232
A
ASP
233
n
206
ASP
233
A
THR
234
n
207
THR
234
A
ILE
235
n
208
ILE
235
A
VAL
236
n
209
VAL
236
A
ASP
237
n
210
ASP
237
A
CPR
238
n
211
PRO
238
A
VAL
239
n
212
VAL
239
A
ASP
240
n
213
ASP
240
A
SER
241
n
214
SER
241
A
GLU
242
n
215
GLU
242
A
TRP
243
n
216
TRP
243
A
PHE
244
n
217
PHE
244
A
GLY
245
n
218
GLY
245
A
PHE
246
n
219
PHE
246
A
TYR
247
n
220
TYR
247
A
ARG
248
n
221
ARG
248
A
SER
249
n
222
SER
249
A
GLY
250
n
223
GLY
250
A
GLN
251
n
224
GLN
251
A
ALA
252
n
225
ALA
252
A
LYS
253
n
226
LYS
253
A
GLU
254
n
227
GLU
254
A
THR
255
n
228
THR
255
A
ILE
256
n
229
ILE
256
A
PRO
257
n
230
PRO
257
A
LEU
258
n
231
LEU
258
A
GLN
259
n
232
GLN
259
A
GLU
260
n
233
GLU
260
A
SER
261
n
234
SER
261
A
THR
262
n
235
THR
262
A
LEU
263
n
236
LEU
263
A
TYR
264
n
237
TYR
264
A
THR
265
n
238
THR
265
A
GLN
266
n
239
GLN
266
A
ASP
267
n
240
ASP
267
A
ARG
268
n
241
ARG
268
A
LEU
269
n
242
LEU
269
A
GLY
270
n
243
GLY
270
A
LEU
271
n
244
LEU
271
A
LYS
272
n
245
LYS
272
A
ALA
273
n
246
ALA
273
A
MET
274
n
247
MET
274
A
ASP
275
n
248
ASP
275
A
LYS
276
n
249
LYS
276
A
ALA
277
n
250
ALA
277
A
GLY
278
n
251
GLY
278
A
GLN
279
n
252
GLN
279
A
LEU
280
n
253
LEU
280
A
VAL
281
n
254
VAL
281
A
PHE
282
n
255
PHE
282
A
LEU
283
n
256
LEU
283
A
ALA
284
n
257
ALA
284
A
LEU
285
n
258
LEU
285
A
GLU
286
n
259
GLU
286
A
GLY
287
n
260
GLY
287
A
ASP
288
n
261
ASP
288
A
HIS
289
n
262
HIS
289
A
LEU
290
n
263
LEU
290
A
GLN
291
n
264
GLN
291
A
LEU
292
n
265
LEU
292
A
SER
293
n
266
SER
293
A
GLU
294
n
267
GLU
294
A
GLU
295
n
268
GLU
295
A
TRP
296
n
269
TRP
296
A
PHE
297
n
270
PHE
297
A
TYR
298
n
271
TYR
298
A
ALA
299
n
272
ALA
299
A
HIS
300
n
273
HIS
300
A
ILE
301
n
274
ILE
301
A
ILE
302
n
275
ILE
302
A
PRO
303
n
276
PRO
303
A
PHE
304
n
277
PHE
304
A
LEU
305
n
278
LEU
305
A
GLU
306
n
279
GLU
306
A
author_defined_assembly
1
monomeric
A
ASN
197
GLYCOSYLATION SITE
A
ASN
170
ASN
A
ASN
212
GLYCOSYLATION SITE
A
ASN
185
ASN
A
ASN
232
GLYCOSYLATION SITE
A
ASN
205
ASN
A
SER
115
modified by HSF
A
SER
88
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
68
A
N
LEU
41
A
O
LEU
35
A
O
LEU
8
A
N
VAL
36
A
N
VAL
9
A
O
ASN
110
A
O
ASN
83
A
O
TYR
109
A
O
TYR
82
A
N
VAL
134
A
N
VAL
107
A
N
LEU
136
A
N
LEU
109
A
O
LYS
224
A
O
LYS
197
A
N
MET
227
A
N
MET
200
A
O
VAL
281
A
O
VAL
254
A
O
PHE
246
A
O
PHE
219
A
N
ILE
256
A
N
ILE
229
1
B
C1
NAG
1
WRONG HAND
1
A
C1
NAG
400
WRONG HAND
1
A
A
OE2
OH
GLU
TYR
294
298
2.13
1
-12.22
2.00
110.40
98.18
A
A
A
CB
CA
C
HIS
HIS
HIS
66
66
66
N
1
9.56
1.50
119.30
128.86
A
A
A
C
N
CA
CYS
PRO
PRO
128
129
129
Y
1
-9.18
1.20
123.30
114.12
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
286
286
286
N
1
A
A
CB
CG
GLU
GLU
286
286
-0.116
0.019
1.517
1.401
N
1
A
A
CG
CD
GLU
GLU
286
286
0.100
0.015
1.515
1.615
N
1
A
A
OD2
NH1
ASP
ARG
28
191
2.15
1_555
7_655
1
A
PRO
29
-36.51
-31.67
1
A
SER
50
-133.33
-77.12
1
A
ILE
62
-112.47
59.51
1
A
PRO
63
-35.39
130.00
1
A
ASN
87
-35.70
116.70
1
A
SER
115
62.07
-130.53
1
A
VAL
134
-97.87
-76.87
1
A
ILE
163
-45.60
-71.67
1
A
ARG
191
-105.10
63.62
1
A
PHE
201
-117.53
-82.74
1
A
PHE
304
-56.79
-6.30
PARAM
PROTEIN.TOP
PARAM
WATER.TOP
PARAM
CARBOHYDRATE.TOP
HDS.PAR
HDS.TOP
53.8
7.13
0.00
0.00
7.13
0.00
-14.27
Used simulated annealing, energy minimization, individual B-factor refinement. Used isotropic B-factor correction and Bulk Solvent Correction
0.288
0.011
0.243
0.243
2.40
19.71
630
12638
5.0
99.4
RANDOM
2044459.65
0.00
1
RESTRAINED
THROUGHOUT
0.0
GENERATED PARAMETER/TOPOLOGY FILES FOR HDSF WITH XPLO2D
FLAT MODEL
51.33
0.331
0.48
0.36
5.00
0.49
0.34
2.40
19.71
40
2325
75
0
2210
0.012
1.50
1.7
2.00
25.0
2.00
1.41
2.50
0.379
0.038
0.325
2.55
100
1961
6
4.9
100.0
54.9
2.40
36.27
1EXW
79642
79642
0.00
0.059
1
7.8
6.1
99.4
0.216
2.40
2.58
15447
1
6.0
99.7
data reduction
MOSFLM
data scaling
SCALA
data reduction
TRUNCATE
refinement
CNS
data scaling
CCP4
(SCALA
data scaling
TRUNCATE
phasing
CNS
PALMITOYL PROTEIN THIOESTERASE 1 (E.C.3.1.2.22)
CRYSTAL STRUCTURE OF PALMITOYL PROTEIN THIOESTERASE 1 COMPLEXED WITH HEXADECYLSULFONYL FLUORIDE
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
SER
50
A
SER
23
HELX_P
A
ILE
62
A
ILE
35
1
1
13
A
THR
75
A
THR
48
HELX_P
A
LEU
86
A
LEU
59
1
2
12
A
ASN
87
A
ASN
60
HELX_P
A
LYS
101
A
LYS
74
1
3
15
A
ASP
102
A
ASP
75
HELX_P
A
GLN
106
A
GLN
79
5
4
5
A
GLN
116
A
GLN
89
HELX_P
A
CYS
128
A
CYS
101
1
5
13
A
SER
157
A
SER
130
HELX_P
A
TYR
172
A
TYR
145
1
6
16
A
ALA
175
A
ALA
148
HELX_P
A
LEU
180
A
LEU
153
1
7
6
A
VAL
181
A
VAL
154
HELX_P
A
TYR
185
A
TYR
158
5
8
5
A
ARG
191
A
ARG
164
HELX_P
A
SER
199
A
SER
172
1
9
9
A
PHE
201
A
PHE
174
HELX_P
A
ASN
206
A
ASN
179
1
10
6
A
ASN
212
A
ASN
185
HELX_P
A
ALA
221
A
ALA
194
1
11
10
A
PRO
238
A
PRO
211
HELX_P
A
PHE
244
A
PHE
217
5
12
7
A
PRO
257
A
PRO
230
HELX_P
A
GLU
260
A
GLU
233
5
13
4
A
SER
261
A
SER
234
HELX_P
A
GLN
266
A
GLN
239
1
14
6
A
GLY
270
A
GLY
243
HELX_P
A
ALA
277
A
ALA
250
1
15
8
A
SER
293
A
SER
266
HELX_P
A
ILE
301
A
ILE
274
1
16
9
A
ILE
302
A
ILE
275
HELX_P
A
GLU
306
A
GLU
279
5
17
5
disulf
1.657
A
CYS
45
A
SG
CYS
18
1_555
A
CYS
46
A
SG
CYS
19
1_555
disulf
2.036
A
CYS
96
A
SG
CYS
69
1_555
A
CYS
128
A
SG
CYS
101
1_555
disulf
2.036
A
CYS
152
A
SG
CYS
125
1_555
A
CYS
160
A
SG
CYS
133
1_555
covale
modified by HSF
1.775
one
A
SER
115
A
OG
SER
88
1_555
A
HDS
430
E
S1
HDS
1_555
covale
1.453
one
N-Glycosylation
A
ASN
197
A
ND2
ASN
170
1_555
A
NAG
400
C
C1
NAG
1_555
covale
1.450
one
N-Glycosylation
A
ASN
212
A
ND2
ASN
185
1_555
A
NAG
410
D
C1
NAG
1_555
covale
1.445
one
N-Glycosylation
A
ASN
232
A
ND2
ASN
205
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.385
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
HYDROLASE
alpha/beta hydrolase, palmitoyl protein thioesterase, PMSF, HYDROLASE
A
SER
130
A
SER
103
1
A
PRO
131
A
PRO
104
0.09
A
ASP
237
A
ASP
210
1
A
PRO
238
A
PRO
211
1.70
PPT_BOVIN
UNP
1
28
P45478
DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ
GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH
DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD
RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE
28
306
1EXW
28
306
P45478
A
1
1
279
6
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
VAL
67
A
VAL
40
A
SER
69
A
SER
42
A
LEU
35
A
LEU
8
A
TRP
38
A
TRP
11
A
TYR
109
A
TYR
82
A
PHE
114
A
PHE
87
A
MET
133
A
MET
106
A
VAL
139
A
VAL
112
A
LYS
224
A
LYS
197
A
PHE
230
A
PHE
203
A
LEU
280
A
LEU
253
A
LEU
285
A
LEU
258
A
PHE
246
A
PHE
219
A
TYR
247
A
TYR
220
A
THR
255
A
THR
228
A
ILE
256
A
ILE
229
91
P 41 2 2