0.010633
0.000000
0.000000
0.000000
0.011806
0.000000
0.000000
0.000000
0.021742
0.00000
0.00000
0.00000
Horton, J.R.
Cheng, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.
90.
90.
94.043
84.702
45.993
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
O
N
76
N
P
N
77
N
O
N
78
N
O
N
79
N
O
N
80
N
C
N
81
R
C
N
82
N
O
N
83
S
C
N
84
N
O
N
85
N
C
N
86
R
C
Y
87
N
N
Y
88
N
C
Y
89
N
N
Y
90
N
C
Y
91
N
C
N
92
N
N
Y
93
N
N
Y
94
N
C
Y
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
N
C
N
122
R
C
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
N
C
N
156
R
C
Y
157
N
N
Y
158
N
C
Y
159
N
N
Y
160
N
C
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
C
N
165
N
N
N
166
N
N
Y
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
P
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
O
N
190
S
C
N
191
N
O
N
192
N
C
N
193
R
C
N
194
N
N
N
195
N
C
N
196
N
O
N
197
N
N
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
N
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
O
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
Y
272
N
C
Y
273
N
N
Y
274
N
C
Y
275
N
C
Y
276
N
N
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
S
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
N
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
S
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
R
C
N
439
N
O
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
N
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
N
N
479
S
C
N
480
N
C
N
481
N
O
N
482
N
C
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
Y
488
N
C
N
489
N
O
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
N
N
503
S
C
N
504
N
C
N
505
N
O
N
506
N
C
N
507
N
C
N
508
N
C
N
509
N
O
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
Y
453
N
doub
Y
454
N
sing
Y
455
N
sing
N
456
N
sing
Y
457
N
doub
Y
458
N
sing
Y
459
N
sing
N
460
N
sing
Y
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
Y
481
N
doub
Y
482
N
sing
Y
483
N
sing
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
doub
N
488
N
sing
Y
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
doub
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
300
1049
1056
10.1006/jmbi.2000.3938
10903853
PvuII endonuclease contains two calcium ions in active sites.
2000
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
284
1491
10.1006/jmbi.1998.2269
Asp34 of PvuII Endonuclease is directly involved in DNA minor groove recognition and indirectly involved in catalysis
1998
GE
Biol.Chem.
1431-6730
379
451
How is modification of the DNA substrate recognized by the PvuII restriction endonuclease?
1998
10.2210/pdb1f0o/pdb
pdb_00001f0o
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95
1
IMAGE PLATE
1999-02-14
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
SELF-ANNEALING OLIGONUCLEOTIDE CONTAINING COGNATE SIX BASE PAIR SEQUENCE
3967.585
(5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3')
2
syn
polymer
18370.992
TYPE II RESTRICTION ENZYME PVUII
3.1.21.4
2
man
polymer
40.078
CALCIUM ION
4
syn
non-polymer
18.015
water
190
nat
water
PVUII ENDONUCLEASE, R.PVUII
E.C.3.1.21.4
no
no
(DT)(DG)(DA)(DC)(DC)(DA)(DG)(DC)(DT)(DG)(DG)(DT)(DC)
TGACCAGCTGGTC
C,D
polydeoxyribonucleotide
no
no
MSHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGREGNDAVDNAGQEYELKSINIDLTKGF
STHHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY
MSHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGREGNDAVDNAGQEYELKSINIDLTKGF
STHHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Proteus
Escherichia
sample
585
Proteus vulgaris
562
Escherichia coli
PLASMID
PPR594
1
2.03
39.55
VAPOR DIFFUSION, HANGING DROP
4.5
PEG 4000, SODIUM ACETATE, CaCL2, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
sodium acetate
1
CaCl2
1
PEG 4000
1
PEG 4000
2
12.954
1
20
C
4
D
13
15.959
C_DA4:DT13_D
1
-2.987
-0.392
0.366
-0.201
11.025
1
19
C
5
D
12
10.562
C_DC5:DG12_D
2
-21.602
0.640
-0.235
0.035
-6.251
1
19
C
6
D
11
-0.264
C_DC6:DG11_D
3
-3.354
0.299
-0.220
-0.280
-6.627
1
20
C
7
D
10
-0.390
C_DA7:DT10_D
4
15.114
0.129
-0.505
-0.269
3.855
1
19
C
8
D
9
2.666
C_DG8:DC9_D
5
-4.758
-0.379
0.208
-0.165
1.803
1
19
C
9
D
8
-0.272
C_DC9:DG8_D
6
-9.843
0.034
-0.345
-0.159
6.356
1
20
C
10
D
7
-2.326
C_DT10:DA7_D
7
10.394
-0.096
-0.425
-0.203
9.384
1
19
C
11
D
6
-2.290
C_DG11:DC6_D
8
-4.915
-0.422
0.003
-0.186
-5.660
1
19
C
12
D
5
3.785
C_DG12:DC5_D
9
-17.335
-0.759
-0.025
-0.120
-3.467
1
20
C
13
D
4
3.000
C_DT13:DA4_D
10
-5.195
-0.327
-0.349
-0.418
3.220
1
19
C
14
D
3
2.610
C_DC14:DG3_D
11
-13.223
0.044
-0.018
0.088
3.354
36.414
C
C
4
5
-1.284
D
D
13
12
3.424
-0.798
-0.053
0.059
CC_DA4DC5:DG12DT13_DD
1
6.907
-11.116
35.766
0.211
1.088
3.283
34.248
C
C
5
6
14.410
D
D
12
11
3.717
8.403
-0.178
-1.385
CC_DC5DC6:DG11DG12_DD
2
-0.955
1.638
33.217
-3.789
0.138
3.520
28.443
C
C
6
7
4.096
D
D
11
10
3.692
2.009
0.575
-1.550
CC_DC6DA7:DT10DG11_DD
3
-2.257
4.602
28.285
-3.664
-1.743
4.367
21.069
C
C
7
8
-21.866
D
D
10
9
3.438
-7.722
-1.155
-2.735
CC_DA7DG8:DC9DT10_DD
4
-5.289
14.978
18.897
-3.396
0.360
3.628
40.161
C
C
8
9
-0.867
D
D
9
8
3.643
-0.593
0.004
-1.078
CC_DG8DC9:DG8DC9_DD
5
5.360
-7.828
39.812
-1.494
0.676
3.891
21.338
C
C
9
10
-9.194
D
D
8
7
3.574
-3.390
1.303
-2.386
CC_DC9DT10:DA7DG8_DD
6
-0.213
0.577
21.069
-4.851
-3.618
3.417
28.238
C
C
10
11
4.993
D
D
7
6
3.616
2.432
-0.744
-1.758
CC_DT10DG11:DC6DA7_DD
7
1.331
-2.732
28.104
-4.213
1.858
3.439
35.970
C
C
11
12
6.890
D
D
6
5
3.630
4.245
0.337
-1.551
CC_DG11DG12:DC5DC6_DD
8
1.359
-2.206
35.702
-3.168
-0.336
3.135
30.051
C
C
12
13
3.489
D
D
5
4
3.202
1.806
-0.378
-0.416
CC_DG12DT13:DA4DC5_DD
9
2.307
-4.455
29.911
-1.161
1.188
3.236
33.672
C
C
13
14
-4.460
D
D
4
3
3.260
-2.574
-0.457
0.615
CC_DT13DC14:DG3DA4_DD
10
-4.409
7.640
33.294
1.480
0.071
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2000-11-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-05-16
REL
REL
CA
CALCIUM ION
HOH
water
CA
701
3
CA
CA
701
A
CA
784
3
CA
CA
784
A
CA
725
3
CA
CA
725
B
CA
761
3
CA
CA
761
B
TIP
346
4
HOH
HOH
346
C
TIP
636
4
HOH
HOH
636
C
TIP
676
4
HOH
HOH
676
C
TIP
687
4
HOH
HOH
687
C
TIP
721
4
HOH
HOH
721
C
TIP
756
4
HOH
HOH
756
C
TIP
783
4
HOH
HOH
783
C
TIP
887
4
HOH
HOH
887
C
TIP
893
4
HOH
HOH
893
C
TIP
898
4
HOH
HOH
898
C
TIP
904
4
HOH
HOH
904
C
TIP
906
4
HOH
HOH
906
C
TIP
935
4
HOH
HOH
935
C
TIP
947
4
HOH
HOH
947
C
TIP
962
4
HOH
HOH
962
C
TIP
968
4
HOH
HOH
968
C
TIP
973
4
HOH
HOH
973
C
TIP
974
4
HOH
HOH
974
C
TIP
982
4
HOH
HOH
982
C
TIP
1000
4
HOH
HOH
1000
C
TIP
1022
4
HOH
HOH
1022
C
TIP
1027
4
HOH
HOH
1027
C
TIP
1028
4
HOH
HOH
1028
C
TIP
104
4
HOH
HOH
104
D
TIP
140
4
HOH
HOH
140
D
TIP
435
4
HOH
HOH
435
D
TIP
667
4
HOH
HOH
667
D
TIP
775
4
HOH
HOH
775
D
TIP
779
4
HOH
HOH
779
D
TIP
820
4
HOH
HOH
820
D
TIP
853
4
HOH
HOH
853
D
TIP
873
4
HOH
HOH
873
D
TIP
894
4
HOH
HOH
894
D
TIP
924
4
HOH
HOH
924
D
TIP
955
4
HOH
HOH
955
D
TIP
958
4
HOH
HOH
958
D
TIP
959
4
HOH
HOH
959
D
TIP
960
4
HOH
HOH
960
D
TIP
965
4
HOH
HOH
965
D
TIP
978
4
HOH
HOH
978
D
TIP
981
4
HOH
HOH
981
D
TIP
1008
4
HOH
HOH
1008
D
TIP
1010
4
HOH
HOH
1010
D
TIP
98
4
HOH
HOH
785
A
TIP
109
4
HOH
HOH
786
A
TIP
218
4
HOH
HOH
787
A
TIP
290
4
HOH
HOH
788
A
TIP
292
4
HOH
HOH
789
A
TIP
322
4
HOH
HOH
790
A
TIP
457
4
HOH
HOH
791
A
TIP
458
4
HOH
HOH
792
A
TIP
537
4
HOH
HOH
793
A
TIP
555
4
HOH
HOH
794
A
TIP
558
4
HOH
HOH
795
A
TIP
624
4
HOH
HOH
796
A
TIP
693
4
HOH
HOH
797
A
TIP
694
4
HOH
HOH
798
A
TIP
699
4
HOH
HOH
799
A
TIP
715
4
HOH
HOH
800
A
TIP
718
4
HOH
HOH
801
A
TIP
719
4
HOH
HOH
802
A
TIP
735
4
HOH
HOH
803
A
TIP
736
4
HOH
HOH
804
A
TIP
738
4
HOH
HOH
805
A
TIP
741
4
HOH
HOH
806
A
TIP
743
4
HOH
HOH
807
A
TIP
744
4
HOH
HOH
808
A
TIP
751
4
HOH
HOH
809
A
TIP
752
4
HOH
HOH
810
A
TIP
754
4
HOH
HOH
811
A
TIP
757
4
HOH
HOH
812
A
TIP
766
4
HOH
HOH
813
A
TIP
767
4
HOH
HOH
814
A
TIP
768
4
HOH
HOH
815
A
TIP
777
4
HOH
HOH
816
A
TIP
787
4
HOH
HOH
817
A
TIP
788
4
HOH
HOH
818
A
TIP
804
4
HOH
HOH
819
A
TIP
824
4
HOH
HOH
820
A
TIP
830
4
HOH
HOH
821
A
TIP
836
4
HOH
HOH
822
A
TIP
849
4
HOH
HOH
823
A
TIP
860
4
HOH
HOH
824
A
TIP
862
4
HOH
HOH
825
A
TIP
875
4
HOH
HOH
826
A
TIP
881
4
HOH
HOH
827
A
TIP
882
4
HOH
HOH
828
A
TIP
886
4
HOH
HOH
829
A
TIP
888
4
HOH
HOH
830
A
TIP
889
4
HOH
HOH
831
A
TIP
890
4
HOH
HOH
832
A
TIP
896
4
HOH
HOH
833
A
TIP
899
4
HOH
HOH
834
A
TIP
901
4
HOH
HOH
835
A
TIP
907
4
HOH
HOH
836
A
TIP
913
4
HOH
HOH
837
A
TIP
923
4
HOH
HOH
838
A
TIP
930
4
HOH
HOH
839
A
TIP
938
4
HOH
HOH
840
A
TIP
944
4
HOH
HOH
841
A
TIP
951
4
HOH
HOH
842
A
TIP
954
4
HOH
HOH
843
A
TIP
957
4
HOH
HOH
844
A
TIP
963
4
HOH
HOH
845
A
TIP
966
4
HOH
HOH
846
A
TIP
967
4
HOH
HOH
847
A
TIP
969
4
HOH
HOH
848
A
TIP
970
4
HOH
HOH
849
A
TIP
976
4
HOH
HOH
850
A
TIP
986
4
HOH
HOH
851
A
TIP
987
4
HOH
HOH
852
A
TIP
989
4
HOH
HOH
853
A
TIP
991
4
HOH
HOH
854
A
TIP
993
4
HOH
HOH
855
A
TIP
995
4
HOH
HOH
856
A
TIP
997
4
HOH
HOH
857
A
TIP
998
4
HOH
HOH
858
A
TIP
999
4
HOH
HOH
859
A
TIP
1002
4
HOH
HOH
860
A
TIP
1011
4
HOH
HOH
861
A
TIP
1012
4
HOH
HOH
862
A
TIP
1013
4
HOH
HOH
863
A
TIP
1014
4
HOH
HOH
864
A
TIP
1015
4
HOH
HOH
865
A
TIP
1019
4
HOH
HOH
866
A
TIP
1021
4
HOH
HOH
867
A
TIP
1023
4
HOH
HOH
868
A
TIP
1024
4
HOH
HOH
869
A
TIP
1025
4
HOH
HOH
870
A
TIP
1026
4
HOH
HOH
871
A
TIP
1029
4
HOH
HOH
872
A
TIP
1033
4
HOH
HOH
873
A
TIP
249
4
HOH
HOH
249
B
TIP
250
4
HOH
HOH
250
B
TIP
421
4
HOH
HOH
421
B
TIP
654
4
HOH
HOH
654
B
TIP
707
4
HOH
HOH
707
B
TIP
716
4
HOH
HOH
716
B
TIP
722
4
HOH
HOH
722
B
TIP
724
4
HOH
HOH
724
B
TIP
746
4
HOH
HOH
746
B
TIP
750
4
HOH
HOH
750
B
TIP
762
4
HOH
HOH
762
B
TIP
809
4
HOH
HOH
809
B
TIP
819
4
HOH
HOH
819
B
TIP
878
4
HOH
HOH
878
B
TIP
885
4
HOH
HOH
885
B
TIP
911
4
HOH
HOH
911
B
TIP
915
4
HOH
HOH
915
B
TIP
917
4
HOH
HOH
917
B
TIP
918
4
HOH
HOH
918
B
TIP
919
4
HOH
HOH
919
B
TIP
928
4
HOH
HOH
928
B
TIP
931
4
HOH
HOH
931
B
TIP
934
4
HOH
HOH
934
B
TIP
937
4
HOH
HOH
937
B
TIP
940
4
HOH
HOH
940
B
TIP
942
4
HOH
HOH
942
B
TIP
943
4
HOH
HOH
943
B
TIP
946
4
HOH
HOH
946
B
TIP
948
4
HOH
HOH
948
B
TIP
949
4
HOH
HOH
949
B
TIP
961
4
HOH
HOH
961
B
TIP
964
4
HOH
HOH
964
B
TIP
971
4
HOH
HOH
971
B
TIP
972
4
HOH
HOH
972
B
TIP
975
4
HOH
HOH
975
B
TIP
977
4
HOH
HOH
977
B
TIP
979
4
HOH
HOH
979
B
TIP
980
4
HOH
HOH
980
B
TIP
983
4
HOH
HOH
983
B
TIP
984
4
HOH
HOH
984
B
TIP
985
4
HOH
HOH
985
B
TIP
988
4
HOH
HOH
988
B
TIP
992
4
HOH
HOH
992
B
TIP
994
4
HOH
HOH
994
B
TIP
1001
4
HOH
HOH
1001
B
TIP
1003
4
HOH
HOH
1003
B
TIP
1004
4
HOH
HOH
1004
B
TIP
1005
4
HOH
HOH
1005
B
TIP
1006
4
HOH
HOH
1006
B
TIP
1007
4
HOH
HOH
1007
B
TIP
1009
4
HOH
HOH
1009
B
TIP
1016
4
HOH
HOH
1016
B
TIP
1018
4
HOH
HOH
1018
B
TIP
1020
4
HOH
HOH
1020
B
TIP
1030
4
HOH
HOH
1030
B
TIP
1031
4
HOH
HOH
1031
B
TIP
1032
4
HOH
HOH
1032
B
TIP
1034
4
HOH
HOH
1034
B
T
2
n
1
DT
2
C
G
3
n
2
DG
3
C
A
4
n
3
DA
4
C
C
5
n
4
DC
5
C
C
6
n
5
DC
6
C
A
7
n
6
DA
7
C
G
8
n
7
DG
8
C
C
9
n
8
DC
9
C
T
10
n
9
DT
10
C
G
11
n
10
DG
11
C
G
12
n
11
DG
12
C
T
13
n
12
DT
13
C
C
14
n
13
DC
14
C
T
2
n
1
DT
2
D
G
3
n
2
DG
3
D
A
4
n
3
DA
4
D
C
5
n
4
DC
5
D
C
6
n
5
DC
6
D
A
7
n
6
DA
7
D
G
8
n
7
DG
8
D
C
9
n
8
DC
9
D
T
10
n
9
DT
10
D
G
11
n
10
DG
11
D
G
12
n
11
DG
12
D
T
13
n
12
DT
13
D
C
14
n
13
DC
14
D
n
1
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
PRO
4
n
4
PRO
4
A
ASP
5
n
5
ASP
5
A
LEU
6
n
6
LEU
6
A
ASN
7
n
7
ASN
7
A
LYS
8
n
8
LYS
8
A
LEU
9
n
9
LEU
9
A
LEU
10
n
10
LEU
10
A
GLU
11
n
11
GLU
11
A
LEU
12
n
12
LEU
12
A
TRP
13
n
13
TRP
13
A
PRO
14
n
14
PRO
14
A
HIS
15
n
15
HIS
15
A
ILE
16
n
16
ILE
16
A
GLN
17
n
17
GLN
17
A
GLU
18
n
18
GLU
18
A
TYR
19
n
19
TYR
19
A
GLN
20
n
20
GLN
20
A
ASP
21
n
21
ASP
21
A
LEU
22
n
22
LEU
22
A
ALA
23
n
23
ALA
23
A
LEU
24
n
24
LEU
24
A
LYS
25
n
25
LYS
25
A
HIS
26
n
26
HIS
26
A
GLY
27
n
27
GLY
27
A
ILE
28
n
28
ILE
28
A
ASN
29
n
29
ASN
29
A
ASP
30
n
30
ASP
30
A
ILE
31
n
31
ILE
31
A
PHE
32
n
32
PHE
32
A
GLN
33
n
33
GLN
33
A
ASP
34
n
34
ASP
34
A
ASN
35
n
35
ASN
35
A
GLY
36
n
36
GLY
36
A
GLY
37
n
37
GLY
37
A
LYS
38
n
38
LYS
38
A
LEU
39
n
39
LEU
39
A
LEU
40
n
40
LEU
40
A
GLN
41
n
41
GLN
41
A
VAL
42
n
42
VAL
42
A
LEU
43
n
43
LEU
43
A
LEU
44
n
44
LEU
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
GLY
47
n
47
GLY
47
A
LEU
48
n
48
LEU
48
A
THR
49
n
49
THR
49
A
VAL
50
n
50
VAL
50
A
LEU
51
n
51
LEU
51
A
PRO
52
n
52
PRO
52
A
n
53
53
A
n
54
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
ASN
57
n
57
ASN
57
A
ASP
58
n
58
ASP
58
A
ALA
59
n
59
ALA
59
A
VAL
60
n
60
VAL
60
A
ASP
61
n
61
ASP
61
A
ASN
62
n
62
ASN
62
A
ALA
63
n
63
ALA
63
A
GLY
64
n
64
GLY
64
A
GLN
65
n
65
GLN
65
A
GLU
66
n
66
GLU
66
A
TYR
67
n
67
TYR
67
A
GLU
68
n
68
GLU
68
A
LEU
69
n
69
LEU
69
A
LYS
70
n
70
LYS
70
A
SER
71
n
71
SER
71
A
ILE
72
n
72
ILE
72
A
ASN
73
n
73
ASN
73
A
ILE
74
n
74
ILE
74
A
ASP
75
n
75
ASP
75
A
LEU
76
n
76
LEU
76
A
THR
77
n
77
THR
77
A
LYS
78
n
78
LYS
78
A
GLY
79
n
79
GLY
79
A
PHE
80
n
80
PHE
80
A
SER
81
n
81
SER
81
A
THR
82
n
82
THR
82
A
HIS
83
n
83
HIS
83
A
HIS
84
n
84
HIS
84
A
HIS
85
n
85
HIS
85
A
MET
86
n
86
MET
86
A
ASN
87
n
87
ASN
87
A
PRO
88
n
88
PRO
88
A
VAL
89
n
89
VAL
89
A
ILE
90
n
90
ILE
90
A
ILE
91
n
91
ILE
91
A
ALA
92
n
92
ALA
92
A
LYS
93
n
93
LYS
93
A
TYR
94
n
94
TYR
94
A
ARG
95
n
95
ARG
95
A
GLN
96
n
96
GLN
96
A
VAL
97
n
97
VAL
97
A
PRO
98
n
98
PRO
98
A
TRP
99
n
99
TRP
99
A
ILE
100
n
100
ILE
100
A
PHE
101
n
101
PHE
101
A
ALA
102
n
102
ALA
102
A
ILE
103
n
103
ILE
103
A
TYR
104
n
104
TYR
104
A
ARG
105
n
105
ARG
105
A
GLY
106
n
106
GLY
106
A
ILE
107
n
107
ILE
107
A
ALA
108
n
108
ALA
108
A
ILE
109
n
109
ILE
109
A
GLU
110
n
110
GLU
110
A
ALA
111
n
111
ALA
111
A
ILE
112
n
112
ILE
112
A
TYR
113
n
113
TYR
113
A
ARG
114
n
114
ARG
114
A
LEU
115
n
115
LEU
115
A
GLU
116
n
116
GLU
116
A
PRO
117
n
117
PRO
117
A
LYS
118
n
118
LYS
118
A
ASP
119
n
119
ASP
119
A
LEU
120
n
120
LEU
120
A
GLU
121
n
121
GLU
121
A
PHE
122
n
122
PHE
122
A
TYR
123
n
123
TYR
123
A
TYR
124
n
124
TYR
124
A
ASP
125
n
125
ASP
125
A
LYS
126
n
126
LYS
126
A
TRP
127
n
127
TRP
127
A
GLU
128
n
128
GLU
128
A
ARG
129
n
129
ARG
129
A
LYS
130
n
130
LYS
130
A
TRP
131
n
131
TRP
131
A
TYR
132
n
132
TYR
132
A
SER
133
n
133
SER
133
A
ASP
134
n
134
ASP
134
A
GLY
135
n
135
GLY
135
A
HIS
136
n
136
HIS
136
A
LYS
137
n
137
LYS
137
A
ASP
138
n
138
ASP
138
A
ILE
139
n
139
ILE
139
A
ASN
140
n
140
ASN
140
A
ASN
141
n
141
ASN
141
A
PRO
142
n
142
PRO
142
A
LYS
143
n
143
LYS
143
A
ILE
144
n
144
ILE
144
A
PRO
145
n
145
PRO
145
A
VAL
146
n
146
VAL
146
A
LYS
147
n
147
LYS
147
A
TYR
148
n
148
TYR
148
A
VAL
149
n
149
VAL
149
A
MET
150
n
150
MET
150
A
GLU
151
n
151
GLU
151
A
HIS
152
n
152
HIS
152
A
GLY
153
n
153
GLY
153
A
THR
154
n
154
THR
154
A
LYS
155
n
155
LYS
155
A
ILE
156
n
156
ILE
156
A
TYR
157
n
157
TYR
157
A
n
1
1
B
n
2
2
B
n
3
3
B
PRO
4
n
4
PRO
4
B
ASP
5
n
5
ASP
5
B
LEU
6
n
6
LEU
6
B
ASN
7
n
7
ASN
7
B
LYS
8
n
8
LYS
8
B
LEU
9
n
9
LEU
9
B
LEU
10
n
10
LEU
10
B
GLU
11
n
11
GLU
11
B
LEU
12
n
12
LEU
12
B
TRP
13
n
13
TRP
13
B
PRO
14
n
14
PRO
14
B
HIS
15
n
15
HIS
15
B
ILE
16
n
16
ILE
16
B
GLN
17
n
17
GLN
17
B
GLU
18
n
18
GLU
18
B
TYR
19
n
19
TYR
19
B
GLN
20
n
20
GLN
20
B
ASP
21
n
21
ASP
21
B
LEU
22
n
22
LEU
22
B
ALA
23
n
23
ALA
23
B
LEU
24
n
24
LEU
24
B
LYS
25
n
25
LYS
25
B
HIS
26
n
26
HIS
26
B
GLY
27
n
27
GLY
27
B
ILE
28
n
28
ILE
28
B
ASN
29
n
29
ASN
29
B
ASP
30
n
30
ASP
30
B
ILE
31
n
31
ILE
31
B
PHE
32
n
32
PHE
32
B
GLN
33
n
33
GLN
33
B
ASP
34
n
34
ASP
34
B
ASN
35
n
35
ASN
35
B
GLY
36
n
36
GLY
36
B
GLY
37
n
37
GLY
37
B
LYS
38
n
38
LYS
38
B
LEU
39
n
39
LEU
39
B
LEU
40
n
40
LEU
40
B
GLN
41
n
41
GLN
41
B
VAL
42
n
42
VAL
42
B
LEU
43
n
43
LEU
43
B
LEU
44
n
44
LEU
44
B
ILE
45
n
45
ILE
45
B
THR
46
n
46
THR
46
B
GLY
47
n
47
GLY
47
B
LEU
48
n
48
LEU
48
B
THR
49
n
49
THR
49
B
VAL
50
n
50
VAL
50
B
LEU
51
n
51
LEU
51
B
PRO
52
n
52
PRO
52
B
n
53
53
B
n
54
54
B
GLU
55
n
55
GLU
55
B
GLY
56
n
56
GLY
56
B
ASN
57
n
57
ASN
57
B
ASP
58
n
58
ASP
58
B
ALA
59
n
59
ALA
59
B
VAL
60
n
60
VAL
60
B
ASP
61
n
61
ASP
61
B
ASN
62
n
62
ASN
62
B
ALA
63
n
63
ALA
63
B
GLY
64
n
64
GLY
64
B
GLN
65
n
65
GLN
65
B
GLU
66
n
66
GLU
66
B
TYR
67
n
67
TYR
67
B
GLU
68
n
68
GLU
68
B
LEU
69
n
69
LEU
69
B
LYS
70
n
70
LYS
70
B
SER
71
n
71
SER
71
B
ILE
72
n
72
ILE
72
B
ASN
73
n
73
ASN
73
B
ILE
74
n
74
ILE
74
B
ASP
75
n
75
ASP
75
B
LEU
76
n
76
LEU
76
B
THR
77
n
77
THR
77
B
LYS
78
n
78
LYS
78
B
GLY
79
n
79
GLY
79
B
PHE
80
n
80
PHE
80
B
SER
81
n
81
SER
81
B
THR
82
n
82
THR
82
B
HIS
83
n
83
HIS
83
B
HIS
84
n
84
HIS
84
B
HIS
85
n
85
HIS
85
B
MET
86
n
86
MET
86
B
ASN
87
n
87
ASN
87
B
PRO
88
n
88
PRO
88
B
VAL
89
n
89
VAL
89
B
ILE
90
n
90
ILE
90
B
ILE
91
n
91
ILE
91
B
ALA
92
n
92
ALA
92
B
LYS
93
n
93
LYS
93
B
TYR
94
n
94
TYR
94
B
ARG
95
n
95
ARG
95
B
GLN
96
n
96
GLN
96
B
VAL
97
n
97
VAL
97
B
PRO
98
n
98
PRO
98
B
TRP
99
n
99
TRP
99
B
ILE
100
n
100
ILE
100
B
PHE
101
n
101
PHE
101
B
ALA
102
n
102
ALA
102
B
ILE
103
n
103
ILE
103
B
TYR
104
n
104
TYR
104
B
ARG
105
n
105
ARG
105
B
GLY
106
n
106
GLY
106
B
ILE
107
n
107
ILE
107
B
ALA
108
n
108
ALA
108
B
ILE
109
n
109
ILE
109
B
GLU
110
n
110
GLU
110
B
ALA
111
n
111
ALA
111
B
ILE
112
n
112
ILE
112
B
TYR
113
n
113
TYR
113
B
ARG
114
n
114
ARG
114
B
LEU
115
n
115
LEU
115
B
GLU
116
n
116
GLU
116
B
PRO
117
n
117
PRO
117
B
LYS
118
n
118
LYS
118
B
ASP
119
n
119
ASP
119
B
LEU
120
n
120
LEU
120
B
GLU
121
n
121
GLU
121
B
PHE
122
n
122
PHE
122
B
TYR
123
n
123
TYR
123
B
TYR
124
n
124
TYR
124
B
ASP
125
n
125
ASP
125
B
LYS
126
n
126
LYS
126
B
TRP
127
n
127
TRP
127
B
GLU
128
n
128
GLU
128
B
ARG
129
n
129
ARG
129
B
LYS
130
n
130
LYS
130
B
TRP
131
n
131
TRP
131
B
TYR
132
n
132
TYR
132
B
SER
133
n
133
SER
133
B
ASP
134
n
134
ASP
134
B
GLY
135
n
135
GLY
135
B
HIS
136
n
136
HIS
136
B
LYS
137
n
137
LYS
137
B
ASP
138
n
138
ASP
138
B
ILE
139
n
139
ILE
139
B
ASN
140
n
140
ASN
140
B
ASN
141
n
141
ASN
141
B
PRO
142
n
142
PRO
142
B
LYS
143
n
143
LYS
143
B
ILE
144
n
144
ILE
144
B
PRO
145
n
145
PRO
145
B
VAL
146
n
146
VAL
146
B
LYS
147
n
147
LYS
147
B
TYR
148
n
148
TYR
148
B
VAL
149
n
149
VAL
149
B
MET
150
n
150
MET
150
B
GLU
151
n
151
GLU
151
B
HIS
152
n
152
HIS
152
B
GLY
153
n
153
GLY
153
B
THR
154
n
154
THR
154
B
LYS
155
n
155
LYS
155
B
ILE
156
n
156
ILE
156
B
TYR
157
n
157
TYR
157
B
author_defined_assembly
4
tetrameric
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
C
HOH
1028
I
O
HOH
1_555
96.5
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
55
D
O
GLU
55
1_555
99.2
C
HOH
1028
I
O
HOH
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
55
D
O
GLU
55
1_555
82.0
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
B
GLY
56
D
O
GLY
56
1_555
147.1
C
HOH
1028
I
O
HOH
1_555
B
CA
725
G
CA
CA
1_555
B
GLY
56
D
O
GLY
56
1_555
98.3
B
GLU
55
D
O
GLU
55
1_555
B
CA
725
G
CA
CA
1_555
B
GLY
56
D
O
GLY
56
1_555
54.3
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD2
ASP
58
1_555
81.6
C
HOH
1028
I
O
HOH
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD2
ASP
58
1_555
156.5
B
GLU
55
D
O
GLU
55
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD2
ASP
58
1_555
121.5
B
GLY
56
D
O
GLY
56
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD2
ASP
58
1_555
95.7
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD1
ASP
58
1_555
82.6
C
HOH
1028
I
O
HOH
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD1
ASP
58
1_555
161.6
B
GLU
55
D
O
GLU
55
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD1
ASP
58
1_555
80.0
B
GLY
56
D
O
GLY
56
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD1
ASP
58
1_555
74.3
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
725
G
CA
CA
1_555
B
ASP
58
D
OD1
ASP
58
1_555
41.8
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
80.3
C
HOH
1028
I
O
HOH
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
93.3
B
GLU
55
D
O
GLU
55
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
175.2
B
GLY
56
D
O
GLY
56
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
127.8
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
63.3
B
ASP
58
D
OD1
ASP
58
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
104.6
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE1
GLU
68
1_555
124.4
C
HOH
1028
I
O
HOH
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE1
GLU
68
1_555
100.6
B
GLU
55
D
O
GLU
55
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE1
GLU
68
1_555
135.3
B
GLY
56
D
O
GLY
56
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE1
GLU
68
1_555
81.4
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE1
GLU
68
1_555
62.9
B
ASP
58
D
OD1
ASP
58
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE1
GLU
68
1_555
95.0
B
GLU
68
D
OE2
GLU
68
1_555
B
CA
725
G
CA
CA
1_555
B
GLU
68
D
OE1
GLU
68
1_555
46.4
C
DC
9
A
OP1
DC
8
1_555
B
CA
761
H
CA
CA
1_555
C
HOH
898
I
O
HOH
1_555
77.1
C
DC
9
A
OP1
DC
8
1_555
B
CA
761
H
CA
CA
1_555
B
ASP
58
D
OD2
ASP
58
1_555
93.2
C
HOH
898
I
O
HOH
1_555
B
CA
761
H
CA
CA
1_555
B
ASP
58
D
OD2
ASP
58
1_555
164.6
C
DC
9
A
OP1
DC
8
1_555
B
CA
761
H
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
85.1
C
HOH
898
I
O
HOH
1_555
B
CA
761
H
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
108.6
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
761
H
CA
CA
1_555
B
GLU
68
D
OE2
GLU
68
1_555
82.1
C
DC
9
A
OP1
DC
8
1_555
B
CA
761
H
CA
CA
1_555
B
LEU
69
D
O
LEU
69
1_555
163.4
C
HOH
898
I
O
HOH
1_555
B
CA
761
H
CA
CA
1_555
B
LEU
69
D
O
LEU
69
1_555
92.8
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
761
H
CA
CA
1_555
B
LEU
69
D
O
LEU
69
1_555
93.7
B
GLU
68
D
OE2
GLU
68
1_555
B
CA
761
H
CA
CA
1_555
B
LEU
69
D
O
LEU
69
1_555
110.8
C
DC
9
A
OP1
DC
8
1_555
B
CA
761
H
CA
CA
1_555
B
HOH
762
L
O
HOH
1_555
91.2
C
HOH
898
I
O
HOH
1_555
B
CA
761
H
CA
CA
1_555
B
HOH
762
L
O
HOH
1_555
83.5
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
761
H
CA
CA
1_555
B
HOH
762
L
O
HOH
1_555
84.8
B
GLU
68
D
OE2
GLU
68
1_555
B
CA
761
H
CA
CA
1_555
B
HOH
762
L
O
HOH
1_555
166.1
B
LEU
69
D
O
LEU
69
1_555
B
CA
761
H
CA
CA
1_555
B
HOH
762
L
O
HOH
1_555
74.5
D
DC
9
B
OP1
DC
8
1_555
A
CA
701
E
CA
CA
1_555
A
ASP
58
C
OD2
ASP
58
1_555
76.6
D
DC
9
B
OP1
DC
8
1_555
A
CA
701
E
CA
CA
1_555
A
GLU
68
C
OE2
GLU
68
1_555
82.3
A
ASP
58
C
OD2
ASP
58
1_555
A
CA
701
E
CA
CA
1_555
A
GLU
68
C
OE2
GLU
68
1_555
65.3
D
DC
9
B
OP1
DC
8
1_555
A
CA
701
E
CA
CA
1_555
A
LEU
69
C
O
LEU
69
1_555
148.7
A
ASP
58
C
OD2
ASP
58
1_555
A
CA
701
E
CA
CA
1_555
A
LEU
69
C
O
LEU
69
1_555
76.6
A
GLU
68
C
OE2
GLU
68
1_555
A
CA
701
E
CA
CA
1_555
A
LEU
69
C
O
LEU
69
1_555
101.0
D
DC
9
B
OP1
DC
8
1_555
A
CA
701
E
CA
CA
1_555
A
HOH
847
K
O
HOH
1_555
85.7
A
ASP
58
C
OD2
ASP
58
1_555
A
CA
701
E
CA
CA
1_555
A
HOH
847
K
O
HOH
1_555
77.9
A
GLU
68
C
OE2
GLU
68
1_555
A
CA
701
E
CA
CA
1_555
A
HOH
847
K
O
HOH
1_555
143.0
A
LEU
69
C
O
LEU
69
1_555
A
CA
701
E
CA
CA
1_555
A
HOH
847
K
O
HOH
1_555
72.9
D
DC
9
B
OP1
DC
8
1_555
A
CA
784
F
CA
CA
1_555
D
HOH
981
J
O
HOH
1_555
85.3
D
DC
9
B
OP1
DC
8
1_555
A
CA
784
F
CA
CA
1_555
A
GLY
56
C
O
GLY
56
1_555
142.0
D
HOH
981
J
O
HOH
1_555
A
CA
784
F
CA
CA
1_555
A
GLY
56
C
O
GLY
56
1_555
125.3
D
DC
9
B
OP1
DC
8
1_555
A
CA
784
F
CA
CA
1_555
A
ASP
58
C
OD1
ASP
58
1_555
71.1
D
HOH
981
J
O
HOH
1_555
A
CA
784
F
CA
CA
1_555
A
ASP
58
C
OD1
ASP
58
1_555
155.9
A
GLY
56
C
O
GLY
56
1_555
A
CA
784
F
CA
CA
1_555
A
ASP
58
C
OD1
ASP
58
1_555
75.2
D
DC
9
B
OP1
DC
8
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE1
GLU
68
1_555
111.3
D
HOH
981
J
O
HOH
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE1
GLU
68
1_555
99.9
A
GLY
56
C
O
GLY
56
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE1
GLU
68
1_555
87.1
A
ASP
58
C
OD1
ASP
58
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE1
GLU
68
1_555
93.1
D
DC
9
B
OP1
DC
8
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE2
GLU
68
1_555
72.6
D
HOH
981
J
O
HOH
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE2
GLU
68
1_555
82.3
A
GLY
56
C
O
GLY
56
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE2
GLU
68
1_555
127.7
A
ASP
58
C
OD1
ASP
58
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE2
GLU
68
1_555
94.5
A
GLU
68
C
OE1
GLU
68
1_555
A
CA
784
F
CA
CA
1_555
A
GLU
68
C
OE2
GLU
68
1_555
41.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
49
C
N
THR
49
A
O
VAL
60
C
O
VAL
60
A
O
ALA
59
C
O
ALA
59
A
N
TYR
67
C
N
TYR
67
A
N
LYS
70
C
N
LYS
70
A
O
ILE
100
C
O
ILE
100
A
N
ARG
105
C
N
ARG
105
A
O
ALA
108
C
O
ALA
108
A
O
ARG
114
C
O
ARG
114
A
N
THR
154
C
N
THR
154
A
N
PHE
80
C
N
PHE
80
A
O
ILE
144
C
O
ILE
144
B
N
THR
49
D
N
THR
49
B
O
VAL
60
D
O
VAL
60
B
O
ALA
59
D
O
ALA
59
B
N
TYR
67
D
N
TYR
67
B
N
LYS
70
D
N
LYS
70
B
O
ILE
100
D
O
ILE
100
B
O
ARG
105
D
O
ARG
105
B
N
ALA
108
D
N
ALA
108
B
N
PHE
80
D
N
PHE
80
B
O
ILE
144
D
O
ILE
144
1
D
C5'
DC
14
B
C5'
DC
13
1
Y
1
D
C4'
DC
14
B
C4'
DC
13
1
Y
1
D
O4'
DC
14
B
O4'
DC
13
1
Y
1
D
C3'
DC
14
B
C3'
DC
13
1
Y
1
D
O3'
DC
14
B
O3'
DC
13
1
Y
1
D
C2'
DC
14
B
C2'
DC
13
1
Y
1
D
C1'
DC
14
B
C1'
DC
13
1
Y
1
D
N1
DC
14
B
N1
DC
13
1
Y
1
D
C2
DC
14
B
C2
DC
13
1
Y
1
D
O2
DC
14
B
O2
DC
13
1
Y
1
D
N3
DC
14
B
N3
DC
13
1
Y
1
D
C4
DC
14
B
C4
DC
13
1
Y
1
D
N4
DC
14
B
N4
DC
13
1
Y
1
D
C5
DC
14
B
C5
DC
13
1
Y
1
D
C6
DC
14
B
C6
DC
13
1
Y
1
A
CG
HIS
3
C
CG
HIS
3
1
Y
1
A
ND1
HIS
3
C
ND1
HIS
3
1
Y
1
A
CD2
HIS
3
C
CD2
HIS
3
1
Y
1
A
CE1
HIS
3
C
CE1
HIS
3
1
Y
1
A
NE2
HIS
3
C
NE2
HIS
3
1
Y
1
A
CG
LYS
8
C
CG
LYS
8
1
Y
1
A
CD
LYS
8
C
CD
LYS
8
1
Y
1
A
CE
LYS
8
C
CE
LYS
8
1
Y
1
A
NZ
LYS
8
C
NZ
LYS
8
1
Y
1
A
O
PRO
52
C
O
PRO
52
1
Y
1
A
CG
GLU
55
C
CG
GLU
55
1
Y
1
A
CD
GLU
55
C
CD
GLU
55
1
Y
1
A
OE1
GLU
55
C
OE1
GLU
55
1
Y
1
A
OE2
GLU
55
C
OE2
GLU
55
1
Y
1
A
CG
LYS
78
C
CG
LYS
78
1
Y
1
A
CD
LYS
78
C
CD
LYS
78
1
Y
1
A
CE
LYS
78
C
CE
LYS
78
1
Y
1
A
NZ
LYS
78
C
NZ
LYS
78
1
Y
1
A
CG
GLN
96
C
CG
GLN
96
1
Y
1
A
CD
GLN
96
C
CD
GLN
96
1
Y
1
A
OE1
GLN
96
C
OE1
GLN
96
1
Y
1
A
NE2
GLN
96
C
NE2
GLN
96
1
Y
1
A
CG
ARG
105
C
CG
ARG
105
1
Y
1
A
CD
ARG
105
C
CD
ARG
105
1
Y
1
A
NE
ARG
105
C
NE
ARG
105
1
Y
1
A
CZ
ARG
105
C
CZ
ARG
105
1
Y
1
A
NH1
ARG
105
C
NH1
ARG
105
1
Y
1
A
NH2
ARG
105
C
NH2
ARG
105
1
Y
1
A
CG
LYS
118
C
CG
LYS
118
1
Y
1
A
CD
LYS
118
C
CD
LYS
118
1
Y
1
A
CE
LYS
118
C
CE
LYS
118
1
Y
1
A
NZ
LYS
118
C
NZ
LYS
118
1
Y
1
A
CG
LYS
126
C
CG
LYS
126
1
Y
1
A
CD
LYS
126
C
CD
LYS
126
1
Y
1
A
CE
LYS
126
C
CE
LYS
126
1
Y
1
A
NZ
LYS
126
C
NZ
LYS
126
1
Y
1
A
CG
LYS
130
C
CG
LYS
130
1
Y
1
A
CD
LYS
130
C
CD
LYS
130
1
Y
1
A
CE
LYS
130
C
CE
LYS
130
1
Y
1
A
NZ
LYS
130
C
NZ
LYS
130
1
Y
1
A
CG
TYR
132
C
CG
TYR
132
1
Y
1
A
CD1
TYR
132
C
CD1
TYR
132
1
Y
1
A
CD2
TYR
132
C
CD2
TYR
132
1
Y
1
A
CE1
TYR
132
C
CE1
TYR
132
1
Y
1
A
CE2
TYR
132
C
CE2
TYR
132
1
Y
1
A
CZ
TYR
132
C
CZ
TYR
132
1
Y
1
A
OH
TYR
132
C
OH
TYR
132
1
Y
1
A
CG
LYS
137
C
CG
LYS
137
1
Y
1
A
CD
LYS
137
C
CD
LYS
137
1
Y
1
A
CE
LYS
137
C
CE
LYS
137
1
Y
1
A
NZ
LYS
137
C
NZ
LYS
137
1
Y
1
B
CG
GLU
11
D
CG
GLU
11
1
Y
1
B
CD
GLU
11
D
CD
GLU
11
1
Y
1
B
OE1
GLU
11
D
OE1
GLU
11
1
Y
1
B
OE2
GLU
11
D
OE2
GLU
11
1
Y
1
B
O
PRO
52
D
O
PRO
52
1
Y
1
B
CG
GLU
55
D
CG
GLU
55
1
Y
1
B
CD
GLU
55
D
CD
GLU
55
1
Y
1
B
OE1
GLU
55
D
OE1
GLU
55
1
Y
1
B
OE2
GLU
55
D
OE2
GLU
55
1
Y
1
B
CG
ASN
62
D
CG
ASN
62
1
Y
1
B
OD1
ASN
62
D
OD1
ASN
62
1
Y
1
B
ND2
ASN
62
D
ND2
ASN
62
1
Y
1
B
CG
LYS
78
D
CG
LYS
78
1
Y
1
B
CD
LYS
78
D
CD
LYS
78
1
Y
1
B
CE
LYS
78
D
CE
LYS
78
1
Y
1
B
NZ
LYS
78
D
NZ
LYS
78
1
Y
1
B
CG
LYS
93
D
CG
LYS
93
1
Y
1
B
CD
LYS
93
D
CD
LYS
93
1
Y
1
B
CE
LYS
93
D
CE
LYS
93
1
Y
1
B
NZ
LYS
93
D
NZ
LYS
93
1
Y
1
B
CG
LYS
118
D
CG
LYS
118
1
Y
1
B
CD
LYS
118
D
CD
LYS
118
1
Y
1
B
CE
LYS
118
D
CE
LYS
118
1
Y
1
B
NZ
LYS
118
D
NZ
LYS
118
1
Y
1
B
CG
LYS
126
D
CG
LYS
126
1
Y
1
B
CD
LYS
126
D
CD
LYS
126
1
Y
1
B
CE
LYS
126
D
CE
LYS
126
1
Y
1
B
NZ
LYS
126
D
NZ
LYS
126
1
Y
1
B
CG
ARG
129
D
CG
ARG
129
1
Y
1
B
CD
ARG
129
D
CD
ARG
129
1
Y
1
B
NE
ARG
129
D
NE
ARG
129
1
Y
1
B
CZ
ARG
129
D
CZ
ARG
129
1
Y
1
B
NH1
ARG
129
D
NH1
ARG
129
1
Y
1
B
NH2
ARG
129
D
NH2
ARG
129
1
Y
1
B
CG
LYS
137
D
CG
LYS
137
1
Y
1
B
CD
LYS
137
D
CD
LYS
137
1
Y
1
B
CE
LYS
137
D
CE
LYS
137
1
Y
1
B
NZ
LYS
137
D
NZ
LYS
137
1
Y
1
A
MET
1
C
MET
1
1
Y
1
A
GLY
53
C
GLY
53
1
Y
1
A
ARG
54
C
ARG
54
1
Y
1
B
MET
1
D
MET
1
1
Y
1
B
SER
2
D
SER
2
1
Y
1
B
HIS
3
D
HIS
3
1
Y
1
B
GLY
53
D
GLY
53
1
Y
1
B
ARG
54
D
ARG
54
1
Y
1
B
B
O
O
HOH
HOH
984
985
2.05
1
A
B
O
O
HOH
HOH
803
975
2.18
1
C
DG
8
0.070
SIDE CHAIN
1
D
DT
2
0.073
SIDE CHAIN
1
2.37
0.30
108.30
110.67
D
D
D
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
A
THR
82
-124.93
-74.85
1
A
TRP
131
-55.09
-70.41
1
A
ASP
134
-59.82
5.87
1
A
ASN
141
49.90
70.97
1
B
ASP
34
48.83
29.57
1
B
ILE
74
-67.85
2.19
1
B
THR
82
-120.08
-66.71
0.2790000
0.2050000
0.2050000
0.2790000
2.5
30.0
1241
12739
12739
10
96.0
RANDOM
1
THROUGHOUT
0
0
Engh & Huber
2.5
30.0
190
3154
4
511
2449
0.006
1.3
22.2
1.37
23.7
2.5
30.0
1F0O
13150
13150
-3
0.0570000
1
20.1
4.7
98.9
0.3320000
2.50
2.54
3.1
96.5
model building
X-PLOR
refinement
X-PLOR
3.851
data scaling
SCALEPACK
phasing
X-PLOR
PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE-CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT EACH ACTIVE SITE
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
The biological assembly is a dimer consisting of
protein chain A and chain B and double strained DNA consisting
of chains C and D with two CA+2 at each monomeric active site.
A
ASP
5
C
ASP
5
HELX_P
A
LYS
25
C
LYS
25
1
1
21
A
ASN
35
C
ASN
35
HELX_P
A
GLY
47
C
GLY
47
1
2
13
A
ASN
87
C
ASN
87
HELX_P
A
GLN
96
C
GLN
96
1
3
10
A
GLU
116
C
GLU
116
HELX_P
A
ASP
134
C
ASP
134
1
4
19
A
VAL
146
C
VAL
146
HELX_P
A
GLY
153
C
GLY
153
1
5
8
B
PRO
4
D
PRO
4
HELX_P
B
HIS
26
D
HIS
26
1
6
23
B
ASN
35
D
ASN
35
HELX_P
B
GLY
47
D
GLY
47
1
7
13
B
ASN
87
D
ASN
87
HELX_P
B
ARG
95
D
ARG
95
1
8
9
B
GLU
116
D
GLU
116
HELX_P
B
ASP
134
D
ASP
134
1
9
19
B
VAL
146
D
VAL
146
HELX_P
B
GLY
153
D
GLY
153
1
10
8
metalc
2.320
C
DC
9
A
OP1
DC
8
1_555
B
CA
725
G
CA
CA
1_555
metalc
2.592
C
DC
9
A
OP1
DC
8
1_555
B
CA
761
H
CA
CA
1_555
metalc
2.791
C
HOH
898
I
O
HOH
1_555
B
CA
761
H
CA
CA
1_555
metalc
2.489
C
HOH
1028
I
O
HOH
1_555
B
CA
725
G
CA
CA
1_555
metalc
2.562
D
DC
9
B
OP1
DC
8
1_555
A
CA
701
E
CA
CA
1_555
metalc
2.560
D
DC
9
B
OP1
DC
8
1_555
A
CA
784
F
CA
CA
1_555
metalc
2.657
D
HOH
981
J
O
HOH
1_555
A
CA
784
F
CA
CA
1_555
metalc
2.638
A
GLY
56
C
O
GLY
56
1_555
A
CA
784
F
CA
CA
1_555
metalc
3.090
A
ASP
58
C
OD2
ASP
58
1_555
A
CA
701
E
CA
CA
1_555
metalc
3.060
A
ASP
58
C
OD1
ASP
58
1_555
A
CA
784
F
CA
CA
1_555
metalc
2.699
A
GLU
68
C
OE2
GLU
68
1_555
A
CA
701
E
CA
CA
1_555
metalc
2.973
A
GLU
68
C
OE1
GLU
68
1_555
A
CA
784
F
CA
CA
1_555
metalc
3.221
A
GLU
68
C
OE2
GLU
68
1_555
A
CA
784
F
CA
CA
1_555
metalc
2.393
A
LEU
69
C
O
LEU
69
1_555
A
CA
701
E
CA
CA
1_555
metalc
2.801
A
CA
701
E
CA
CA
1_555
A
HOH
847
K
O
HOH
1_555
metalc
3.353
B
GLU
55
D
O
GLU
55
1_555
B
CA
725
G
CA
CA
1_555
metalc
2.345
B
GLY
56
D
O
GLY
56
1_555
B
CA
725
G
CA
CA
1_555
metalc
3.310
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
725
G
CA
CA
1_555
metalc
2.788
B
ASP
58
D
OD1
ASP
58
1_555
B
CA
725
G
CA
CA
1_555
metalc
2.576
B
ASP
58
D
OD2
ASP
58
1_555
B
CA
761
H
CA
CA
1_555
metalc
2.868
B
GLU
68
D
OE2
GLU
68
1_555
B
CA
725
G
CA
CA
1_555
metalc
2.721
B
GLU
68
D
OE1
GLU
68
1_555
B
CA
725
G
CA
CA
1_555
metalc
2.386
B
GLU
68
D
OE2
GLU
68
1_555
B
CA
761
H
CA
CA
1_555
metalc
2.280
B
LEU
69
D
O
LEU
69
1_555
B
CA
761
H
CA
CA
1_555
metalc
2.450
B
CA
761
H
CA
CA
1_555
B
HOH
762
L
O
HOH
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N1
DA
3
1_555
D
DT
13
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N6
DA
3
1_555
D
DT
13
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DC
5
A
N3
DC
4
1_555
D
DG
12
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
5
A
N4
DC
4
1_555
D
DG
12
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
5
A
O2
DC
4
1_555
D
DG
12
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
6
A
N3
DC
5
1_555
D
DG
11
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
6
A
N4
DC
5
1_555
D
DG
11
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
6
A
O2
DC
5
1_555
D
DG
11
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DA
7
A
N1
DA
6
1_555
D
DT
10
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
C
DA
7
A
N6
DA
6
1_555
D
DT
10
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
C
DG
8
A
N1
DG
7
1_555
D
DC
9
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
8
A
N2
DG
7
1_555
D
DC
9
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
8
A
O6
DG
7
1_555
D
DC
9
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
C
DC
9
A
N3
DC
8
1_555
D
DG
8
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
9
A
N4
DC
8
1_555
D
DG
8
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
9
A
O2
DC
8
1_555
D
DG
8
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
C
DT
10
A
N3
DT
9
1_555
D
DA
7
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
10
A
O4
DT
9
1_555
D
DA
7
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N1
DG
10
1_555
D
DC
6
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N2
DG
10
1_555
D
DC
6
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
11
A
O6
DG
10
1_555
D
DC
6
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
12
A
N1
DG
11
1_555
D
DC
5
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
12
A
N2
DG
11
1_555
D
DC
5
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
12
A
O6
DG
11
1_555
D
DC
5
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
C
DT
13
A
N3
DT
12
1_555
D
DA
4
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
13
A
O4
DT
12
1_555
D
DA
4
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N3
DC
13
1_555
D
DG
3
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N4
DC
13
1_555
D
DG
3
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
14
A
O2
DC
13
1_555
D
DG
3
B
N2
DG
2
1_555
hydrolase/DNA
PROTEIN-DNA COMPLEX, ENDONUCLEASE TYPE II, RESTRICTION ENZYME, Catalytic Metal visualization, hydrolase-DNA COMPLEX
T2P2_PROVU
UNP
2
1
P23657
1F0O
PDB
1
1F0O
1
157
1F0O
1
157
P23657
A
1
1
157
1
157
1F0O
1
157
P23657
B
1
1
157
2
14
1F0O
2
14
1F0O
C
2
1
13
2
14
1F0O
2
14
1F0O
D
2
1
13
6
2
5
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
49
C
THR
49
A
VAL
50
C
VAL
50
A
ALA
59
C
ALA
59
A
VAL
60
C
VAL
60
A
GLU
66
C
GLU
66
A
ASN
73
C
ASN
73
A
TRP
99
C
TRP
99
A
ARG
105
C
ARG
105
A
ALA
108
C
ALA
108
A
LEU
115
C
LEU
115
A
THR
154
C
THR
154
A
LYS
155
C
LYS
155
A
GLY
79
C
GLY
79
A
PHE
80
C
PHE
80
A
ILE
144
C
ILE
144
A
PRO
145
C
PRO
145
B
THR
49
D
THR
49
B
VAL
50
D
VAL
50
B
ALA
59
D
ALA
59
B
VAL
60
D
VAL
60
B
GLU
66
D
GLU
66
B
ASN
73
D
ASN
73
B
TRP
99
D
TRP
99
B
ARG
105
D
ARG
105
B
ALA
108
D
ALA
108
B
LEU
115
D
LEU
115
B
GLY
79
D
GLY
79
B
PHE
80
D
PHE
80
B
ILE
144
D
ILE
144
B
PRO
145
D
PRO
145
BINDING SITE FOR RESIDUE CA A 701
A
CA
701
Software
6
BINDING SITE FOR RESIDUE CA B 725
B
CA
725
Software
7
BINDING SITE FOR RESIDUE CA B 761
B
CA
761
Software
7
BINDING SITE FOR RESIDUE CA A 784
A
CA
784
Software
6
A
ASP
58
C
ASP
58
6
1_555
A
GLU
68
C
GLU
68
6
1_555
A
LEU
69
C
LEU
69
6
1_555
A
LYS
70
C
LYS
70
6
1_555
A
HOH
847
K
HOH
6
1_555
D
DC
9
B
DC
8
6
1_555
B
GLU
55
D
GLU
55
7
1_555
B
GLY
56
D
GLY
56
7
1_555
B
ASP
58
D
ASP
58
7
1_555
B
GLU
68
D
GLU
68
7
1_555
B
CA
761
H
CA
7
1_555
C
DC
9
A
DC
8
7
1_555
C
HOH
1028
I
HOH
7
1_555
B
ASP
58
D
ASP
58
7
1_555
B
GLU
68
D
GLU
68
7
1_555
B
LEU
69
D
LEU
69
7
1_555
B
CA
725
G
CA
7
1_555
B
HOH
762
L
HOH
7
1_555
C
DC
9
A
DC
8
7
1_555
C
HOH
898
I
HOH
7
1_555
A
GLY
56
C
GLY
56
6
1_555
A
ASP
58
C
ASP
58
6
1_555
A
GLU
68
C
GLU
68
6
1_555
D
DG
8
B
DG
7
6
1_555
D
DC
9
B
DC
8
6
1_555
D
HOH
981
J
HOH
6
1_555
19
orthorhombic
P 21 21 21