0.008375 0.004835 0.000000 0.000000 0.009671 0.000000 0.000000 0.000000 0.013351 0.00000 0.00000 0.00000 Hart, P.J. Ogihara, N.L. Liu, H. Nersissian, A.M. Valentine, J.S. Eisenberg, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 119.4 119.4 74.9 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 2 63.546 COPPER (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 38 2167 2178 10.1021/bi982284u 10026301 A structure-based mechanism for copper-zinc superoxide dismutase. 1999 10.2210/pdb1f1d/pdb pdb_00001f1d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 15839.583 COPPER-ZINC SUPEROXIDE DISMUTASE 1.15.1.1 H46C 1 man polymer 63.546 COPPER (II) ION 1 syn non-polymer 65.409 ZINC ION 1 syn non-polymer CUZNSOD no no MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFCIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVR HVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFCIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVR HVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia Escherichia coli sample CYTOPLASM 4932 Saccharomyces cerevisiae 511693 Escherichia coli BL21 BL21 PET3D 1 3.24 62.06 VAPOR DIFFUSION, HANGING DROP 7.7 ammonium sulfate, Tris-HCl, NaCl, pH 7.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Refinement description Database references Derived calculations 1 0 2002-12-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2014-02-05 1 4 2017-10-04 1 5 2021-11-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id yeast wild type CuZnSOD (room temp) yeast wild type CuZnSOD (93K) yeast wild type CuZnSOD (15 atm oxygen) yeast wild type CuZnSOD (azide bound form) yeast H48C CuZnSOD mutant human G37R FALS mutant CuZnSOD yeast G85R CuZnSOD mutant yeast H48Q CuZnSOD FALS mutant analog yeast CuZnSOD exposed to Nitric Oxide RCSB Y RCSB 2000-05-18 REL REL CU COPPER (II) ION ZN ZINC ION CU 154 2 CU CU 154 A ZN 155 3 ZN ZN 155 A n 1 0 A VAL 1 n 2 VAL 1 A GLN 2 n 3 GLN 2 A ALA 3 n 4 ALA 3 A VAL 4 n 5 VAL 4 A ALA 5 n 6 ALA 5 A VAL 6 n 7 VAL 6 A LEU 7 n 8 LEU 7 A LYS 8 n 9 LYS 8 A GLY 9 n 10 GLY 9 A ASP 10 n 11 ASP 10 A ALA 11 n 12 ALA 11 A GLY 12 n 13 GLY 12 A VAL 13 n 14 VAL 13 A SER 14 n 15 SER 14 A GLY 15 n 16 GLY 15 A VAL 16 n 17 VAL 16 A VAL 17 n 18 VAL 17 A LYS 18 n 19 LYS 18 A PHE 19 n 20 PHE 19 A GLU 20 n 21 GLU 20 A GLN 21 n 22 GLN 21 A ALA 22 n 23 ALA 22 A SER 23 n 24 SER 23 A GLU 24 n 25 GLU 24 A SER 25 n 26 SER 25 A GLU 26 n 27 GLU 26 A PRO 27 n 28 PRO 27 A THR 28 n 29 THR 28 A THR 29 n 30 THR 29 A VAL 30 n 31 VAL 30 A SER 31 n 32 SER 31 A TYR 32 n 33 TYR 32 A GLU 33 n 34 GLU 33 A ILE 34 n 35 ILE 34 A ALA 35 n 36 ALA 35 A GLY 36 n 37 GLY 36 A ASN 37 n 38 ASN 37 A SER 38 n 39 SER 38 A PRO 39 n 40 PRO 39 A ASN 40 n 41 ASN 40 A ALA 41 n 42 ALA 41 A GLU 42 n 43 GLU 42 A ARG 43 n 44 ARG 43 A GLY 44 n 45 GLY 44 A PHE 45 n 46 PHE 45 A CYS 46 n 47 CYS 46 A ILE 47 n 48 ILE 47 A HIS 48 n 49 HIS 48 A GLU 49 n 50 GLU 49 A PHE 50 n 51 PHE 50 A GLY 51 n 52 GLY 51 A ASP 52 n 53 ASP 52 A ALA 53 n 54 ALA 53 A THR 54 n 55 THR 54 A ASN 55 n 56 ASN 55 A GLY 56 n 57 GLY 56 A CYS 57 n 58 CYS 57 A VAL 58 n 59 VAL 58 A SER 59 n 60 SER 59 A ALA 60 n 61 ALA 60 A GLY 61 n 62 GLY 61 A PRO 62 n 63 PRO 62 A HIS 63 n 64 HIS 63 A PHE 64 n 65 PHE 64 A ASN 65 n 66 ASN 65 A PRO 66 n 67 PRO 66 A PHE 67 n 68 PHE 67 A LYS 68 n 69 LYS 68 A LYS 69 n 70 LYS 69 A THR 70 n 71 THR 70 A HIS 71 n 72 HIS 71 A GLY 72 n 73 GLY 72 A ALA 73 n 74 ALA 73 A PRO 74 n 75 PRO 74 A THR 75 n 76 THR 75 A ASP 76 n 77 ASP 76 A GLU 77 n 78 GLU 77 A VAL 78 n 79 VAL 78 A ARG 79 n 80 ARG 79 A HIS 80 n 81 HIS 80 A VAL 81 n 82 VAL 81 A GLY 82 n 83 GLY 82 A ASP 83 n 84 ASP 83 A MET 84 n 85 MET 84 A GLY 85 n 86 GLY 85 A ASN 86 n 87 ASN 86 A VAL 87 n 88 VAL 87 A LYS 88 n 89 LYS 88 A THR 89 n 90 THR 89 A ASP 90 n 91 ASP 90 A GLU 91 n 92 GLU 91 A ASN 92 n 93 ASN 92 A GLY 93 n 94 GLY 93 A VAL 94 n 95 VAL 94 A ALA 95 n 96 ALA 95 A LYS 96 n 97 LYS 96 A GLY 97 n 98 GLY 97 A SER 98 n 99 SER 98 A PHE 99 n 100 PHE 99 A LYS 100 n 101 LYS 100 A ASP 101 n 102 ASP 101 A SER 102 n 103 SER 102 A LEU 103 n 104 LEU 103 A ILE 104 n 105 ILE 104 A LYS 105 n 106 LYS 105 A LEU 106 n 107 LEU 106 A ILE 107 n 108 ILE 107 A GLY 108 n 109 GLY 108 A PRO 109 n 110 PRO 109 A THR 110 n 111 THR 110 A SER 111 n 112 SER 111 A VAL 112 n 113 VAL 112 A VAL 113 n 114 VAL 113 A GLY 114 n 115 GLY 114 A ARG 115 n 116 ARG 115 A SER 116 n 117 SER 116 A VAL 117 n 118 VAL 117 A VAL 118 n 119 VAL 118 A ILE 119 n 120 ILE 119 A HIS 120 n 121 HIS 120 A ALA 121 n 122 ALA 121 A GLY 122 n 123 GLY 122 A GLN 123 n 124 GLN 123 A ASP 124 n 125 ASP 124 A ASP 125 n 126 ASP 125 A LEU 126 n 127 LEU 126 A GLY 127 n 128 GLY 127 A LYS 128 n 129 LYS 128 A GLY 129 n 130 GLY 129 A ASP 130 n 131 ASP 130 A THR 131 n 132 THR 131 A GLU 132 n 133 GLU 132 A GLU 133 n 134 GLU 133 A SER 134 n 135 SER 134 A LEU 135 n 136 LEU 135 A LYS 136 n 137 LYS 136 A THR 137 n 138 THR 137 A GLY 138 n 139 GLY 138 A ASN 139 n 140 ASN 139 A ALA 140 n 141 ALA 140 A GLY 141 n 142 GLY 141 A PRO 142 n 143 PRO 142 A ARG 143 n 144 ARG 143 A PRO 144 n 145 PRO 144 A ALA 145 n 146 ALA 145 A CYS 146 n 147 CYS 146 A GLY 147 n 148 GLY 147 A VAL 148 n 149 VAL 148 A ILE 149 n 150 ILE 149 A GLY 150 n 151 GLY 150 A LEU 151 n 152 LEU 151 A THR 152 n 153 THR 152 A ASN 153 n 154 ASN 153 A author_defined_assembly 2 dimeric A HIS 48 A NE2 HIS 49 1_555 A CU 154 B CU CU 1_555 A HIS 120 A NE2 HIS 121 1_555 134.5 A HIS 63 A ND1 HIS 64 1_555 A ZN 155 C ZN ZN 1_555 A HIS 71 A ND1 HIS 72 1_555 103.0 A HIS 63 A ND1 HIS 64 1_555 A ZN 155 C ZN ZN 1_555 A HIS 80 A ND1 HIS 81 1_555 101.1 A HIS 71 A ND1 HIS 72 1_555 A ZN 155 C ZN ZN 1_555 A HIS 80 A ND1 HIS 81 1_555 119.6 A HIS 63 A ND1 HIS 64 1_555 A ZN 155 C ZN ZN 1_555 A ASP 83 A OD2 ASP 84 1_555 117.3 A HIS 71 A ND1 HIS 72 1_555 A ZN 155 C ZN ZN 1_555 A ASP 83 A OD2 ASP 84 1_555 98.7 A HIS 80 A ND1 HIS 81 1_555 A ZN 155 C ZN ZN 1_555 A ASP 83 A OD2 ASP 84 1_555 117.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_646 y+1,x-1,-z+1 crystal symmetry operation 179.1000000000 -103.4034332119 74.9000000000 A O ASP 101 A O ASP 102 A N THR 28 A N THR 29 A N ALA 35 A N ALA 36 A O SER 14 A O SER 15 A N PHE 19 A N PHE 20 A O ALA 3 A O ALA 4 A O VAL 4 A O VAL 5 A N GLY 150 A N GLY 151 A O VAL 87 A O VAL 88 A N ARG 43 A N ARG 44 A N HIS 48 A N HIS 49 A O SER 116 A O SER 117 A N ILE 119 A N ILE 120 A O ALA 145 A O ALA 146 1 A MET 0 A MET 1 1 Y 1 7.50 1.10 114.20 121.70 A A A CA CB SG CYS CYS CYS 46 46 46 N 1 A ASN 40 39.26 55.58 1 A SER 59 -65.30 0.49 1 A ASP 130 -114.99 78.30 0.278 0.233 2.1 6.0 1150 11533 11533 random 1 0 Engh & Huber 2.1 6.0 0 1104 2 0 1102 0.012 1.7 23.4 2.0 40.0 1F1D 75390 13962 0.0 -3.0 0.11 1 14.1 5.4 99.7 0.303 2.0 2.07 1339 1 97.2 data scaling SCALEPACK model building X-PLOR refinement X-PLOR 3.1 phasing X-PLOR Crystal structure of yeast H46C cuznsod mutant 1 N N 2 N N 3 N N A CYS 57 A CYS 58 HELX_P A GLY 61 A GLY 62 5 1 5 A THR 131 A THR 132 HELX_P A THR 137 A THR 138 1 2 7 disulf 2.040 A CYS 57 A SG CYS 58 1_555 A CYS 146 A SG CYS 147 1_555 metalc 2.219 A HIS 48 A NE2 HIS 49 1_555 A CU 154 B CU CU 1_555 metalc 1.990 A HIS 63 A ND1 HIS 64 1_555 A ZN 155 C ZN ZN 1_555 metalc 2.090 A HIS 71 A ND1 HIS 72 1_555 A ZN 155 C ZN ZN 1_555 metalc 2.361 A HIS 80 A ND1 HIS 81 1_555 A ZN 155 C ZN ZN 1_555 metalc 1.824 A ASP 83 A OD2 ASP 84 1_555 A ZN 155 C ZN ZN 1_555 metalc 1.990 A HIS 120 A NE2 HIS 121 1_555 A CU 154 B CU CU 1_555 OXIDOREDUCTASE CuZnSOD, Copper Binging Site, Copper-Cysteine bond, OXIDOREDUCTASE SODC_YEAST UNP 1 P00445 0 153 1F1D 0 153 P00445 A 1 1 154 1 HIS engineered mutation CYS 46 1F1D A P00445 UNP 46 47 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 95 A ALA 96 A ASP 101 A ASP 102 A THR 28 A THR 29 A ALA 35 A ALA 36 A SER 14 A SER 15 A GLU 20 A GLU 21 A GLN 2 A GLN 3 A LEU 7 A LEU 8 A GLY 150 A GLY 151 A THR 152 A THR 153 A ASP 83 A ASP 84 A LYS 88 A LYS 89 A GLU 42 A GLU 43 A HIS 48 A HIS 49 A SER 116 A SER 117 A ILE 119 A ILE 120 A ALA 145 A ALA 146 A VAL 148 A VAL 149 BINDING SITE FOR RESIDUE CU A 154 A CU 154 Software 4 BINDING SITE FOR RESIDUE ZN A 155 A ZN 155 Software 4 A CYS 46 A CYS 47 4 1_555 A HIS 48 A HIS 49 4 1_555 A HIS 63 A HIS 64 4 1_555 A HIS 120 A HIS 121 4 1_555 A HIS 63 A HIS 64 4 1_555 A HIS 71 A HIS 72 4 1_555 A HIS 80 A HIS 81 4 1_555 A ASP 83 A ASP 84 4 1_555 155 H 3 2