0.008375
0.004835
0.000000
0.000000
0.009671
0.000000
0.000000
0.000000
0.013351
0.00000
0.00000
0.00000
Hart, P.J.
Ogihara, N.L.
Liu, H.
Nersissian, A.M.
Valentine, J.S.
Eisenberg, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
119.4
119.4
74.9
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
38
2167
2178
10.1021/bi982284u
10026301
A structure-based mechanism for copper-zinc superoxide dismutase.
1999
10.2210/pdb1f1d/pdb
pdb_00001f1d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
RIGAKU RAXIS IIC
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
15839.583
COPPER-ZINC SUPEROXIDE DISMUTASE
1.15.1.1
H46C
1
man
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
CUZNSOD
no
no
MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFCIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVR
HVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN
MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFCIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVR
HVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGLTN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
CYTOPLASM
4932
Saccharomyces cerevisiae
511693
Escherichia coli BL21
BL21
PET3D
1
3.24
62.06
VAPOR DIFFUSION, HANGING DROP
7.7
ammonium sulfate, Tris-HCl, NaCl, pH 7.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Refinement description
Database references
Derived calculations
1
0
2002-12-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2014-02-05
1
4
2017-10-04
1
5
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
yeast wild type CuZnSOD (room temp)
yeast wild type CuZnSOD (93K)
yeast wild type CuZnSOD (15 atm oxygen)
yeast wild type CuZnSOD (azide bound form)
yeast H48C CuZnSOD mutant
human G37R FALS mutant CuZnSOD
yeast G85R CuZnSOD mutant
yeast H48Q CuZnSOD FALS mutant analog
yeast CuZnSOD exposed to Nitric Oxide
RCSB
Y
RCSB
2000-05-18
REL
REL
CU
COPPER (II) ION
ZN
ZINC ION
CU
154
2
CU
CU
154
A
ZN
155
3
ZN
ZN
155
A
n
1
0
A
VAL
1
n
2
VAL
1
A
GLN
2
n
3
GLN
2
A
ALA
3
n
4
ALA
3
A
VAL
4
n
5
VAL
4
A
ALA
5
n
6
ALA
5
A
VAL
6
n
7
VAL
6
A
LEU
7
n
8
LEU
7
A
LYS
8
n
9
LYS
8
A
GLY
9
n
10
GLY
9
A
ASP
10
n
11
ASP
10
A
ALA
11
n
12
ALA
11
A
GLY
12
n
13
GLY
12
A
VAL
13
n
14
VAL
13
A
SER
14
n
15
SER
14
A
GLY
15
n
16
GLY
15
A
VAL
16
n
17
VAL
16
A
VAL
17
n
18
VAL
17
A
LYS
18
n
19
LYS
18
A
PHE
19
n
20
PHE
19
A
GLU
20
n
21
GLU
20
A
GLN
21
n
22
GLN
21
A
ALA
22
n
23
ALA
22
A
SER
23
n
24
SER
23
A
GLU
24
n
25
GLU
24
A
SER
25
n
26
SER
25
A
GLU
26
n
27
GLU
26
A
PRO
27
n
28
PRO
27
A
THR
28
n
29
THR
28
A
THR
29
n
30
THR
29
A
VAL
30
n
31
VAL
30
A
SER
31
n
32
SER
31
A
TYR
32
n
33
TYR
32
A
GLU
33
n
34
GLU
33
A
ILE
34
n
35
ILE
34
A
ALA
35
n
36
ALA
35
A
GLY
36
n
37
GLY
36
A
ASN
37
n
38
ASN
37
A
SER
38
n
39
SER
38
A
PRO
39
n
40
PRO
39
A
ASN
40
n
41
ASN
40
A
ALA
41
n
42
ALA
41
A
GLU
42
n
43
GLU
42
A
ARG
43
n
44
ARG
43
A
GLY
44
n
45
GLY
44
A
PHE
45
n
46
PHE
45
A
CYS
46
n
47
CYS
46
A
ILE
47
n
48
ILE
47
A
HIS
48
n
49
HIS
48
A
GLU
49
n
50
GLU
49
A
PHE
50
n
51
PHE
50
A
GLY
51
n
52
GLY
51
A
ASP
52
n
53
ASP
52
A
ALA
53
n
54
ALA
53
A
THR
54
n
55
THR
54
A
ASN
55
n
56
ASN
55
A
GLY
56
n
57
GLY
56
A
CYS
57
n
58
CYS
57
A
VAL
58
n
59
VAL
58
A
SER
59
n
60
SER
59
A
ALA
60
n
61
ALA
60
A
GLY
61
n
62
GLY
61
A
PRO
62
n
63
PRO
62
A
HIS
63
n
64
HIS
63
A
PHE
64
n
65
PHE
64
A
ASN
65
n
66
ASN
65
A
PRO
66
n
67
PRO
66
A
PHE
67
n
68
PHE
67
A
LYS
68
n
69
LYS
68
A
LYS
69
n
70
LYS
69
A
THR
70
n
71
THR
70
A
HIS
71
n
72
HIS
71
A
GLY
72
n
73
GLY
72
A
ALA
73
n
74
ALA
73
A
PRO
74
n
75
PRO
74
A
THR
75
n
76
THR
75
A
ASP
76
n
77
ASP
76
A
GLU
77
n
78
GLU
77
A
VAL
78
n
79
VAL
78
A
ARG
79
n
80
ARG
79
A
HIS
80
n
81
HIS
80
A
VAL
81
n
82
VAL
81
A
GLY
82
n
83
GLY
82
A
ASP
83
n
84
ASP
83
A
MET
84
n
85
MET
84
A
GLY
85
n
86
GLY
85
A
ASN
86
n
87
ASN
86
A
VAL
87
n
88
VAL
87
A
LYS
88
n
89
LYS
88
A
THR
89
n
90
THR
89
A
ASP
90
n
91
ASP
90
A
GLU
91
n
92
GLU
91
A
ASN
92
n
93
ASN
92
A
GLY
93
n
94
GLY
93
A
VAL
94
n
95
VAL
94
A
ALA
95
n
96
ALA
95
A
LYS
96
n
97
LYS
96
A
GLY
97
n
98
GLY
97
A
SER
98
n
99
SER
98
A
PHE
99
n
100
PHE
99
A
LYS
100
n
101
LYS
100
A
ASP
101
n
102
ASP
101
A
SER
102
n
103
SER
102
A
LEU
103
n
104
LEU
103
A
ILE
104
n
105
ILE
104
A
LYS
105
n
106
LYS
105
A
LEU
106
n
107
LEU
106
A
ILE
107
n
108
ILE
107
A
GLY
108
n
109
GLY
108
A
PRO
109
n
110
PRO
109
A
THR
110
n
111
THR
110
A
SER
111
n
112
SER
111
A
VAL
112
n
113
VAL
112
A
VAL
113
n
114
VAL
113
A
GLY
114
n
115
GLY
114
A
ARG
115
n
116
ARG
115
A
SER
116
n
117
SER
116
A
VAL
117
n
118
VAL
117
A
VAL
118
n
119
VAL
118
A
ILE
119
n
120
ILE
119
A
HIS
120
n
121
HIS
120
A
ALA
121
n
122
ALA
121
A
GLY
122
n
123
GLY
122
A
GLN
123
n
124
GLN
123
A
ASP
124
n
125
ASP
124
A
ASP
125
n
126
ASP
125
A
LEU
126
n
127
LEU
126
A
GLY
127
n
128
GLY
127
A
LYS
128
n
129
LYS
128
A
GLY
129
n
130
GLY
129
A
ASP
130
n
131
ASP
130
A
THR
131
n
132
THR
131
A
GLU
132
n
133
GLU
132
A
GLU
133
n
134
GLU
133
A
SER
134
n
135
SER
134
A
LEU
135
n
136
LEU
135
A
LYS
136
n
137
LYS
136
A
THR
137
n
138
THR
137
A
GLY
138
n
139
GLY
138
A
ASN
139
n
140
ASN
139
A
ALA
140
n
141
ALA
140
A
GLY
141
n
142
GLY
141
A
PRO
142
n
143
PRO
142
A
ARG
143
n
144
ARG
143
A
PRO
144
n
145
PRO
144
A
ALA
145
n
146
ALA
145
A
CYS
146
n
147
CYS
146
A
GLY
147
n
148
GLY
147
A
VAL
148
n
149
VAL
148
A
ILE
149
n
150
ILE
149
A
GLY
150
n
151
GLY
150
A
LEU
151
n
152
LEU
151
A
THR
152
n
153
THR
152
A
ASN
153
n
154
ASN
153
A
author_defined_assembly
2
dimeric
A
HIS
48
A
NE2
HIS
49
1_555
A
CU
154
B
CU
CU
1_555
A
HIS
120
A
NE2
HIS
121
1_555
134.5
A
HIS
63
A
ND1
HIS
64
1_555
A
ZN
155
C
ZN
ZN
1_555
A
HIS
71
A
ND1
HIS
72
1_555
103.0
A
HIS
63
A
ND1
HIS
64
1_555
A
ZN
155
C
ZN
ZN
1_555
A
HIS
80
A
ND1
HIS
81
1_555
101.1
A
HIS
71
A
ND1
HIS
72
1_555
A
ZN
155
C
ZN
ZN
1_555
A
HIS
80
A
ND1
HIS
81
1_555
119.6
A
HIS
63
A
ND1
HIS
64
1_555
A
ZN
155
C
ZN
ZN
1_555
A
ASP
83
A
OD2
ASP
84
1_555
117.3
A
HIS
71
A
ND1
HIS
72
1_555
A
ZN
155
C
ZN
ZN
1_555
A
ASP
83
A
OD2
ASP
84
1_555
98.7
A
HIS
80
A
ND1
HIS
81
1_555
A
ZN
155
C
ZN
ZN
1_555
A
ASP
83
A
OD2
ASP
84
1_555
117.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_646
y+1,x-1,-z+1
crystal symmetry operation
179.1000000000
-103.4034332119
74.9000000000
A
O
ASP
101
A
O
ASP
102
A
N
THR
28
A
N
THR
29
A
N
ALA
35
A
N
ALA
36
A
O
SER
14
A
O
SER
15
A
N
PHE
19
A
N
PHE
20
A
O
ALA
3
A
O
ALA
4
A
O
VAL
4
A
O
VAL
5
A
N
GLY
150
A
N
GLY
151
A
O
VAL
87
A
O
VAL
88
A
N
ARG
43
A
N
ARG
44
A
N
HIS
48
A
N
HIS
49
A
O
SER
116
A
O
SER
117
A
N
ILE
119
A
N
ILE
120
A
O
ALA
145
A
O
ALA
146
1
A
MET
0
A
MET
1
1
Y
1
7.50
1.10
114.20
121.70
A
A
A
CA
CB
SG
CYS
CYS
CYS
46
46
46
N
1
A
ASN
40
39.26
55.58
1
A
SER
59
-65.30
0.49
1
A
ASP
130
-114.99
78.30
0.278
0.233
2.1
6.0
1150
11533
11533
random
1
0
Engh & Huber
2.1
6.0
0
1104
2
0
1102
0.012
1.7
23.4
2.0
40.0
1F1D
75390
13962
0.0
-3.0
0.11
1
14.1
5.4
99.7
0.303
2.0
2.07
1339
1
97.2
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
3.1
phasing
X-PLOR
Crystal structure of yeast H46C cuznsod mutant
1
N
N
2
N
N
3
N
N
A
CYS
57
A
CYS
58
HELX_P
A
GLY
61
A
GLY
62
5
1
5
A
THR
131
A
THR
132
HELX_P
A
THR
137
A
THR
138
1
2
7
disulf
2.040
A
CYS
57
A
SG
CYS
58
1_555
A
CYS
146
A
SG
CYS
147
1_555
metalc
2.219
A
HIS
48
A
NE2
HIS
49
1_555
A
CU
154
B
CU
CU
1_555
metalc
1.990
A
HIS
63
A
ND1
HIS
64
1_555
A
ZN
155
C
ZN
ZN
1_555
metalc
2.090
A
HIS
71
A
ND1
HIS
72
1_555
A
ZN
155
C
ZN
ZN
1_555
metalc
2.361
A
HIS
80
A
ND1
HIS
81
1_555
A
ZN
155
C
ZN
ZN
1_555
metalc
1.824
A
ASP
83
A
OD2
ASP
84
1_555
A
ZN
155
C
ZN
ZN
1_555
metalc
1.990
A
HIS
120
A
NE2
HIS
121
1_555
A
CU
154
B
CU
CU
1_555
OXIDOREDUCTASE
CuZnSOD, Copper Binging Site, Copper-Cysteine bond, OXIDOREDUCTASE
SODC_YEAST
UNP
1
P00445
0
153
1F1D
0
153
P00445
A
1
1
154
1
HIS
engineered mutation
CYS
46
1F1D
A
P00445
UNP
46
47
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
95
A
ALA
96
A
ASP
101
A
ASP
102
A
THR
28
A
THR
29
A
ALA
35
A
ALA
36
A
SER
14
A
SER
15
A
GLU
20
A
GLU
21
A
GLN
2
A
GLN
3
A
LEU
7
A
LEU
8
A
GLY
150
A
GLY
151
A
THR
152
A
THR
153
A
ASP
83
A
ASP
84
A
LYS
88
A
LYS
89
A
GLU
42
A
GLU
43
A
HIS
48
A
HIS
49
A
SER
116
A
SER
117
A
ILE
119
A
ILE
120
A
ALA
145
A
ALA
146
A
VAL
148
A
VAL
149
BINDING SITE FOR RESIDUE CU A 154
A
CU
154
Software
4
BINDING SITE FOR RESIDUE ZN A 155
A
ZN
155
Software
4
A
CYS
46
A
CYS
47
4
1_555
A
HIS
48
A
HIS
49
4
1_555
A
HIS
63
A
HIS
64
4
1_555
A
HIS
120
A
HIS
121
4
1_555
A
HIS
63
A
HIS
64
4
1_555
A
HIS
71
A
HIS
72
4
1_555
A
HIS
80
A
HIS
81
4
1_555
A
ASP
83
A
ASP
84
4
1_555
155
H 3 2