0.012594
0.000000
0.000000
0.000000
0.014749
0.000000
0.000000
0.000000
0.020121
0.00000
0.00000
0.00000
Kerfeld, C.A.
Serag, A.A.
Sawaya, M.R.
Krogmann, D.W.
Yeates, T.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
79.400
67.800
49.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
40
9215
9225
10.1021/bi002679p
11478889
Structures of cytochrome c-549 and cytochrome c6 from the cyanobacterium Arthrospira maxima.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
IMAGE PLATE
1995-06-01
RIGAKU RAXIS
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
9230.350
CYTOCHROME C6
1
nat
polymer
618.503
HEME C
1
syn
non-polymer
no
no
GDVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAMPGFNGRLSPLQIEDVAAY
VVDQAEKGW
GDVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAMPGFNGRLSPLQIEDVAAY
VVDQAEKGW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Arthrospira
sample
129910
Arthrospira maxima
1
VAPOR DIFFUSION, HANGING DROP
7.8
0.1 M Tris, pH 7.8,
2.4 M (NH4)2SO4,
0.5 M LiSO4,
1% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
software
atom_site
chem_comp
entity
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Structure summary
1
0
2001-08-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
2
0
2021-03-03
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.name
_chem_comp.pdbx_synonyms
_entity.formula_weight
_entity.pdbx_description
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1CYI contains crystal structure of cytochrome c6 from Chlamydomonas reinhardtii
RCSB
Y
RCSB
2000-05-18
REL
HEC
HEME C
HEM
200
2
HEC
HEC
200
A
n
1
1
A
ASP
2
n
2
ASP
2
A
VAL
3
n
3
VAL
3
A
ALA
4
n
4
ALA
4
A
ALA
5
n
5
ALA
5
A
GLY
6
n
6
GLY
6
A
ALA
7
n
7
ALA
7
A
SER
8
n
8
SER
8
A
VAL
9
n
9
VAL
9
A
PHE
10
n
10
PHE
10
A
SER
11
n
11
SER
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
CYS
14
n
14
CYS
14
A
ALA
15
n
15
ALA
15
A
ALA
16
n
16
ALA
16
A
CYS
17
n
17
CYS
17
A
HIS
18
n
18
HIS
18
A
MET
19
n
19
MET
19
A
GLY
20
n
20
GLY
20
A
GLY
21
n
21
GLY
21
A
ARG
22
n
22
ARG
22
A
ASN
23
n
23
ASN
23
A
VAL
24
n
24
VAL
24
A
ILE
25
n
25
ILE
25
A
VAL
26
n
26
VAL
26
A
ALA
27
n
27
ALA
27
A
ASN
28
n
28
ASN
28
A
LYS
29
n
29
LYS
29
A
THR
30
n
30
THR
30
A
LEU
31
n
31
LEU
31
A
SER
32
n
32
SER
32
A
LYS
33
n
33
LYS
33
A
SER
34
n
34
SER
34
A
ASP
35
n
35
ASP
35
A
LEU
36
n
36
LEU
36
A
ALA
37
n
37
ALA
37
A
LYS
38
n
38
LYS
38
A
TYR
39
n
39
TYR
39
A
LEU
40
n
40
LEU
40
A
LYS
41
n
41
LYS
41
A
GLY
42
n
42
GLY
42
A
PHE
43
n
43
PHE
43
A
ASP
44
n
44
ASP
44
A
ASP
45
n
45
ASP
45
A
ASP
46
n
46
ASP
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
ALA
49
n
49
ALA
49
A
ALA
50
n
50
ALA
50
A
VAL
51
n
51
VAL
51
A
ALA
52
n
52
ALA
52
A
TYR
53
n
53
TYR
53
A
GLN
54
n
54
GLN
54
A
VAL
55
n
55
VAL
55
A
THR
56
n
56
THR
56
A
ASN
57
n
57
ASN
57
A
GLY
58
n
58
GLY
58
A
LYS
59
n
59
LYS
59
A
ASN
60
n
60
ASN
60
A
ALA
61
n
61
ALA
61
A
MET
62
n
62
MET
62
A
PRO
63
n
63
PRO
63
A
GLY
64
n
64
GLY
64
A
PHE
65
n
65
PHE
65
A
ASN
66
n
66
ASN
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
LEU
69
n
69
LEU
69
A
SER
70
n
70
SER
70
A
PRO
71
n
71
PRO
71
A
LEU
72
n
72
LEU
72
A
GLN
73
n
73
GLN
73
A
ILE
74
n
74
ILE
74
A
GLU
75
n
75
GLU
75
A
ASP
76
n
76
ASP
76
A
VAL
77
n
77
VAL
77
A
ALA
78
n
78
ALA
78
A
ALA
79
n
79
ALA
79
A
TYR
80
n
80
TYR
80
A
VAL
81
n
81
VAL
81
A
VAL
82
n
82
VAL
82
A
ASP
83
n
83
ASP
83
A
GLN
84
n
84
GLN
84
A
ALA
85
n
85
ALA
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
GLY
88
n
88
GLY
88
A
TRP
89
n
89
TRP
89
A
author_defined_assembly
1
monomeric
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NA
HEC
1_555
92.4
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NB
HEC
1_555
91.1
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NB
HEC
1_555
91.7
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NC
HEC
1_555
86.9
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NC
HEC
1_555
179.3
A
HEC
200
B
NB
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NC
HEC
1_555
88.6
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
85.9
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
90.2
A
HEC
200
B
NB
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
176.4
A
HEC
200
B
NC
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
89.4
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
62
A
SD
MET
62
1_555
170.5
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
62
A
SD
MET
62
1_555
95.4
A
HEC
200
B
NB
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
62
A
SD
MET
62
1_555
94.1
A
HEC
200
B
NC
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
62
A
SD
MET
62
1_555
85.3
A
HEC
200
B
ND
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
62
A
SD
MET
62
1_555
88.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
1
A
GLY
1
1
Y
1
A
ARG
22
-105.45
-158.74
1
A
LYS
29
-114.68
52.33
1
A
ASN
60
46.30
-123.24
0.2550000
0.2320000
0.2330000
0.2330000
2.7
50.0
344
7504
7504
80.4
5% Random
1
0.0
0.0
Engh & Huber
2.7
50.0
0
686
43
0
643
0.011486
1.21714
27.6
2.7
50.0
1F1F
7504
7504
0.0
0.0
0.0860000
1
9.2
3.2
80.8
2.75
3.00
1212
74.0
phasing
AMoRE
refinement
CNS
data scaling
SCALEPACK
CYTOCHROME C6 FROM ARTHROSPIRA MAXIMA
CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM ARTHROSPIRA MAXIMA
1
N
N
2
N
N
A
ASP
2
A
ASP
2
HELX_P
A
CYS
14
A
CYS
14
1
1
13
A
CYS
14
A
CYS
14
HELX_P
A
MET
19
A
MET
19
1
2
6
A
GLY
20
A
GLY
20
HELX_P
A
ARG
22
A
ARG
22
5
3
3
A
SER
32
A
SER
32
HELX_P
A
LEU
40
A
LEU
40
1
4
9
A
ASP
46
A
ASP
46
HELX_P
A
GLY
58
A
GLY
58
1
5
13
A
SER
70
A
SER
70
HELX_P
A
GLY
88
A
GLY
88
1
6
19
covale
1.828
none
A
CYS
14
A
SG
CYS
14
1_555
A
HEC
200
B
CAB
HEC
1_555
covale
1.830
none
A
CYS
17
A
SG
CYS
17
1_555
A
HEC
200
B
CAC
HEC
1_555
metalc
2.017
A
HIS
18
A
NE2
HIS
18
1_555
A
HEC
200
B
FE
HEC
1_555
metalc
2.330
A
MET
62
A
SD
MET
62
1_555
A
HEC
200
B
FE
HEC
1_555
ELECTRON TRANSPORT
cytochrome c6, heme, protein structure, cyanobacteria, photosynthesis, ELECTRON TRANSPORT
CYC6_SPIMA
UNP
1
P00118
1
89
1F1F
1
89
P00118
A
1
1
89
1
LYS
conflict
LEU
72
1F1F
A
P00118
UNP
72
72
BINDING SITE FOR RESIDUE HEC A 200
A
HEC
200
Software
18
A
ASN
13
A
ASN
13
18
1_555
A
CYS
14
A
CYS
14
18
1_555
A
CYS
17
A
CYS
17
18
1_555
A
HIS
18
A
HIS
18
18
1_555
A
ASN
23
A
ASN
23
18
1_555
A
LYS
29
A
LYS
29
18
1_555
A
THR
30
A
THR
30
18
1_555
A
LEU
31
A
LEU
31
18
1_555
A
ASP
35
A
ASP
35
18
1_555
A
LEU
36
A
LEU
36
18
1_555
A
TYR
39
A
TYR
39
18
1_555
A
GLN
54
A
GLN
54
18
1_555
A
VAL
55
A
VAL
55
18
1_555
A
LYS
59
A
LYS
59
18
1_555
A
ASN
60
A
ASN
60
18
1_555
A
ALA
61
A
ALA
61
18
1_555
A
MET
62
A
MET
62
18
1_555
A
GLU
86
A
GLU
86
18
2_554
19
P 21 21 21