0.018084 0.010441 0.000000 0.000000 0.020882 0.000000 0.000000 0.000000 0.006948 0.00000 0.00000 0.00000 Baugh, C. Grate, D. Wilson, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90 90 120 55.297 55.297 143.92 C9 H12 Br N2 O9 P 403.077 n 5-BROMO-URIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C23 H23 N2 O 1 343.442 N,N'-TETRAMETHYL-ROSAMINE (6-DIMETHYLAMINO-9-PHENYL-XANTHEN-3-YLIDENE)-DIMETHYL-AMMONIUM non-polymer Sr 2 87.620 STRONTIUM ION non-polymer N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N O N 20 N C N 21 N C N 22 N BR N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 R C N 46 N O N 47 R C Y 48 N N Y 49 N C Y 50 N N Y 51 N C Y 52 N C N 53 N N Y 54 N N Y 55 N C Y 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 R C N 83 N O N 84 R C N 85 N N N 86 N C N 87 N O N 88 N N N 89 N C N 90 N N N 91 N C N 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N O N 108 N P N 109 N O N 110 N O N 111 N O N 112 N C N 113 R C N 114 N O N 115 S C N 116 N O N 117 R C N 118 N O N 119 R C Y 120 N N Y 121 N C Y 122 N N Y 123 N C N 124 N C N 125 N O N 126 N N N 127 N C N 128 N N N 129 N N Y 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H Y 148 N C Y 149 N C Y 150 N C Y 151 N O Y 152 N C Y 153 N C Y 154 N C Y 155 N C Y 156 N C Y 157 N C Y 158 N C Y 159 N C Y 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N C Y 165 N C Y 166 N C Y 167 N C N 168 N N N 169 N C N 170 N C N 171 N N N 172 N C N 173 N C N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N SR N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N doub N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing Y 60 N sing Y 61 N sing Y 62 N doub N 63 N sing Y 64 N sing Y 65 N sing Y 66 N doub N 67 N sing Y 68 N doub N 69 N sing N 70 N sing Y 71 N sing Y 72 N doub N 73 N sing Y 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing Y 135 N sing Y 136 N sing Y 137 N doub N 138 N sing Y 139 N sing N 140 N sing Y 141 N doub N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N sing N 155 N doub Y 156 N doub N 157 N sing Y 158 N sing Y 159 N sing Y 160 N sing Y 161 N sing Y 162 N doub Y 163 N doub N 164 N sing Y 165 N sing N 166 N sing Y 167 N doub N 168 N sing Y 169 N sing N 170 N sing Y 171 N sing Y 172 N doub Y 173 N sing Y 174 N sing Y 175 N doub N 176 N sing N 177 N sing Y 178 N doub Y 179 N sing Y 180 N sing N 181 N sing Y 182 N doub N 183 N sing Y 184 N sing N 185 N sing Y 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 301 117 128 10.1006/jmbi.2000.3951 10926496 2.8 A crystal structure of the malachite green aptamer. 2000 10.2210/pdb1f1t/pdb pdb_00001f1t 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-08-25 MARRESEARCH MAD M x-ray 1 0.92070 1.0 0.92090 1.0 0.90830 1.0 1.0000 1.0 5.0.2 ALS 0.92070, 0.92090, 0.90830, 1.0000 SYNCHROTRON ALS BEAMLINE 5.0.2 ALL URIDINES ARE 5-BROMO-URIDINE 12711.902 MALACHITE GREEN APTAMER RNA 1 syn polymer 87.620 STRONTIUM ION 8 syn non-polymer 343.442 N,N'-TETRAMETHYL-ROSAMINE 1 syn non-polymer 18.015 water 5 nat water no yes GGA(5BU)CCCGAC(5BU)GGCGAGAGCCAGG(5BU)AACGAA(5BU)GGA(5BU)CC GGAUCCCGACUGGCGAGAGCCAGGUAACGAAUGGAUCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.58 52.30 VAPOR DIFFUSION, HANGING DROP 4.5 CACODYLATE, MGCL2, SRCL2, KCL, SPERMINE, MPD, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 CACODYLATE 1 MGCL2 1 SRCL2 1 KCL 1 SPERMINE 1 MPD 1 MPD 2 -4.834 1 19 A 1 A 38 -6.072 A_G1:C38_A 1 -1.906 -0.785 0.159 -0.534 -1.413 1 19 A 2 A 37 3.072 A_G2:C37_A 2 -19.985 -0.659 -0.304 -0.859 7.079 1 20 A 3 A 36 1.960 A_A3:5BU36_A 3 -9.795 0.099 0.277 -0.263 11.008 1 20 A 4 A 35 -3.505 A_5BU4:A35_A 4 -2.274 -0.544 -0.276 -0.386 12.129 1 19 A 5 A 34 3.853 A_C5:G34_A 5 -12.501 -0.262 -0.396 -0.205 -0.391 1 19 A 6 A 33 3.199 A_C6:G33_A 6 -8.314 0.277 0.048 -0.017 2.167 1 19 A 7 A 29 0.367 A_C7:G29_A 7 -3.222 0.691 0.351 0.011 -2.733 1 19 A 8 A 28 -0.458 A_G8:C28_A 8 2.302 -1.097 0.101 -0.267 -4.922 1 19 A 10 A 23 -4.179 A_C10:G23_A 9 1.609 0.016 -0.135 -0.317 4.327 1 20 A 11 A 22 0.483 A_5BU11:A22_A 10 -3.682 0.392 -0.096 -0.630 2.704 1 19 A 12 A 21 4.466 A_G12:C21_A 11 -13.856 -0.015 -0.175 -0.369 1.130 1 19 A 13 A 20 10.074 A_G13:C20_A 12 -11.956 -0.182 -0.048 -0.238 -2.205 1 19 A 14 A 19 -0.746 A_C14:G19_A 13 -0.923 0.477 -0.248 0.007 9.026 A 15 A 18 -24.202 A_G15:A18_A 14 5.568 7.439 -0.028 -5.000 3.256 30.754 A A 1 2 -7.609 A A 38 37 3.232 -4.007 -0.136 -0.891 AA_G1G2:C37C38_AA 1 5.028 -9.549 30.090 -0.892 1.244 2.455 30.990 A A 2 3 13.159 A A 37 36 2.963 6.957 0.640 -1.544 AA_G2A3:5BU36C37_AA 2 -3.744 7.082 29.989 -4.019 -1.806 3.151 32.633 A A 3 4 3.667 A A 36 35 3.269 2.052 0.210 -1.772 AA_A35BU4:A355BU36_AA 3 4.815 -8.605 32.222 -3.506 0.452 2.403 25.417 A A 4 5 18.274 A A 35 34 3.331 7.910 -0.040 -2.501 AA_5BU4C5:G34A35_AA 4 -0.826 1.907 24.161 -7.732 -0.122 2.866 39.400 A A 5 6 16.261 A A 34 33 3.585 10.826 0.349 -2.126 AA_C5C6:G33G34_AA 5 -2.456 3.689 37.864 -4.444 -0.811 2.808 52.835 A A 6 7 5.774 A A 33 29 3.000 5.130 2.310 -1.226 AA_C6C7:G29G33_AA 6 -1.657 1.865 52.579 -1.673 -2.692 0.224 12.944 A A 7 8 71.299 A A 29 28 7.008 12.221 0.837 -2.197 AA_C7G8:C28G29_AA 7 1.248 -7.281 4.086 -32.747 -1.364 3.376 90.956 A A 8 10 1.135 A A 28 23 3.319 1.619 1.513 1.565 AA_G8C10:G23C28_AA 8 2.810 -1.971 90.910 1.065 -1.005 3.067 34.573 A A 10 11 2.017 A A 23 22 3.089 1.197 -0.516 -1.588 AA_C105BU11:A22G23_AA 9 -3.100 5.223 34.417 -2.846 0.418 2.622 30.397 A A 11 12 17.453 A A 22 21 3.259 9.014 -0.185 -1.652 AA_5BU11G12:C21A22_AA 10 1.885 -3.649 29.000 -4.816 0.702 2.538 30.206 A A 12 13 18.592 A A 21 20 3.186 9.528 0.665 -1.660 AA_G12G13:C20C21_AA 11 1.042 -2.033 28.678 -4.925 -1.087 3.092 37.196 A A 13 14 8.698 A A 20 19 3.366 5.522 0.368 -1.797 AA_G13C14:G19C20_AA 12 3.353 -5.282 36.650 -3.548 -0.132 2.666 49.988 A A 14 15 7.013 A A 19 18 2.959 5.913 -1.286 -2.130 AA_C14G15:A18G19_AA 13 1.581 -1.875 49.635 -2.891 1.621 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-09-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-05-19 REL REL SR STRONTIUM ION ROS N,N'-TETRAMETHYL-ROSAMINE HOH water IN VITRO T7 TRANSCRIPTION OF A LINEARIZED PLASMID TEMPLATE sample SR 201 2 SR SR 201 A SR 202 2 SR SR 202 A SR 203 2 SR SR 203 A SR 204 2 SR SR 204 A SR 205 2 SR SR 205 A SR 206 2 SR SR 206 A SR 208 2 SR SR 208 A SR 209 2 SR SR 209 A ROS 101 3 ROS ROS 101 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A G 1 n 1 G 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A +U 4 n 4 5BU 4 A C 5 n 5 C 5 A C 6 n 6 C 6 A C 7 n 7 C 7 A G 8 n 8 G 8 A A 9 n 9 A 9 A C 10 n 10 C 10 A +U 11 n 11 5BU 11 A G 12 n 12 G 12 A G 13 n 13 G 13 A C 14 n 14 C 14 A G 15 n 15 G 15 A A 16 n 16 A 16 A G 17 n 17 G 17 A A 18 n 18 A 18 A G 19 n 19 G 19 A C 20 n 20 C 20 A C 21 n 21 C 21 A A 22 n 22 A 22 A G 23 n 23 G 23 A G 24 n 24 G 24 A +U 25 n 25 5BU 25 A A 26 n 26 A 26 A A 27 n 27 A 27 A C 28 n 28 C 28 A G 29 n 29 G 29 A A 30 n 30 A 30 A A 31 n 31 A 31 A +U 32 n 32 5BU 32 A G 33 n 33 G 33 A G 34 n 34 G 34 A A 35 n 35 A 35 A +U 36 n 36 5BU 36 A C 37 n 37 C 37 A C 38 n 38 C 38 A author_defined_assembly 1 monomeric A A 16 A OP1 A 16 6_434 A SR 201 B SR SR 1_555 A 5BU 32 A O2 5BU 32 1_555 74.9 A A 16 A OP1 A 16 6_434 A SR 201 B SR SR 1_555 A G 34 A OP1 G 34 1_555 88.6 A 5BU 32 A O2 5BU 32 1_555 A SR 201 B SR SR 1_555 A G 34 A OP1 G 34 1_555 80.4 A A 31 A OP2 A 31 1_555 A SR 205 F SR SR 1_555 A G 33 A OP2 G 33 1_555 93.5 A G 33 A OP1 G 33 1_555 A SR 206 G SR SR 1_555 A HOH 304 K O HOH 1_555 59.7 A 5BU 4 5-BROMO-URIDINE-5'-MONOPHOSPHATE A 5BU 4 U A 5BU 11 5-BROMO-URIDINE-5'-MONOPHOSPHATE A 5BU 11 U A 5BU 25 5-BROMO-URIDINE-5'-MONOPHOSPHATE A 5BU 25 U A 5BU 32 5-BROMO-URIDINE-5'-MONOPHOSPHATE A 5BU 32 U A 5BU 36 5-BROMO-URIDINE-5'-MONOPHOSPHATE A 5BU 36 U 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A OP2 O 5BU HOH 4 305 1.94 1 A G 23 0.052 SIDE CHAIN 1 A G 24 0.063 SIDE CHAIN 1 6.88 1.10 110.50 117.38 A A A O3' P OP2 C C C 6 7 7 Y 1 9.88 1.30 114.00 123.88 A A A N9 C1' C2' G G G 8 8 8 N 1 -7.69 1.10 112.00 104.31 A A A N9 C1' C2' G G G 15 15 15 N 1 8.34 1.30 114.00 122.34 A A A N9 C1' C2' G G G 24 24 24 N 1 10.62 1.30 114.00 124.62 A A A N9 C1' C2' G G G 29 29 29 N 0.2822 0.2609 0.2609 2.8 9.0 3188 3188 RANDOM 1 THROUGHOUT 0 2.8 9.0 5 860 39 816 0 0.013 1.96 2.8 20.0 1F1T 3188 3188 0.057 1 40.59 40.3 99.7 phasing SHARP refinement CNS 0.9 data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N covale 1.600 both A A 3 A O3' A 3 1_555 A 5BU 4 A P 5BU 4 1_555 covale 1.614 both A 5BU 4 A O3' 5BU 4 1_555 A C 5 A P C 5 1_555 covale 1.604 both A C 10 A O3' C 10 1_555 A 5BU 11 A P 5BU 11 1_555 covale 1.608 both A 5BU 11 A O3' 5BU 11 1_555 A G 12 A P G 12 1_555 covale 1.657 both A G 24 A O3' G 24 1_555 A 5BU 25 A P 5BU 25 1_555 covale 1.602 both A 5BU 25 A O3' 5BU 25 1_555 A A 26 A P A 26 1_555 covale 1.586 both A A 31 A O3' A 31 1_555 A 5BU 32 A P 5BU 32 1_555 covale 1.609 both A 5BU 32 A O3' 5BU 32 1_555 A G 33 A P G 33 1_555 covale 1.592 both A A 35 A O3' A 35 1_555 A 5BU 36 A P 5BU 36 1_555 covale 1.601 both A 5BU 36 A O3' 5BU 36 1_555 A C 37 A P C 37 1_555 metalc 2.859 A A 16 A OP1 A 16 6_434 A SR 201 B SR SR 1_555 metalc 3.204 A A 31 A OP2 A 31 1_555 A SR 205 F SR SR 1_555 metalc 2.774 A 5BU 32 A O2 5BU 32 1_555 A SR 201 B SR SR 1_555 metalc 3.152 A G 33 A OP2 G 33 1_555 A SR 205 F SR SR 1_555 metalc 2.617 A G 33 A OP1 G 33 1_555 A SR 206 G SR SR 1_555 metalc 2.635 A G 34 A OP1 G 34 1_555 A SR 201 B SR SR 1_555 metalc 2.722 A SR 206 G SR SR 1_555 A HOH 304 K O HOH 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 38 A N3 C 38 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 38 A O2 C 38 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 38 A N4 C 38 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 37 A N3 C 37 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 37 A O2 C 37 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 37 A N4 C 37 1_555 hydrog WATSON-CRICK A A 3 A N1 A 3 1_555 A 5BU 36 A N3 5BU 36 1_555 hydrog WATSON-CRICK A A 3 A N6 A 3 1_555 A 5BU 36 A O4 5BU 36 1_555 hydrog WATSON-CRICK A 5BU 4 A N3 5BU 4 1_555 A A 35 A N1 A 35 1_555 hydrog WATSON-CRICK A 5BU 4 A O4 5BU 4 1_555 A A 35 A N6 A 35 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 34 A N1 G 34 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 34 A O6 G 34 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 34 A N2 G 34 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 A G 33 A N1 G 33 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 A G 33 A O6 G 33 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 A G 33 A N2 G 33 1_555 hydrog WATSON-CRICK A C 7 A N3 C 7 1_555 A G 29 A N1 G 29 1_555 hydrog WATSON-CRICK A C 7 A N4 C 7 1_555 A G 29 A O6 G 29 1_555 hydrog WATSON-CRICK A C 7 A O2 C 7 1_555 A G 29 A N2 G 29 1_555 hydrog WATSON-CRICK A G 8 A N1 G 8 1_555 A C 28 A N3 C 28 1_555 hydrog WATSON-CRICK A G 8 A N2 G 8 1_555 A C 28 A O2 C 28 1_555 hydrog WATSON-CRICK A G 8 A O6 G 8 1_555 A C 28 A N4 C 28 1_555 hydrog WATSON-CRICK A C 10 A N3 C 10 1_555 A G 23 A N1 G 23 1_555 hydrog WATSON-CRICK A C 10 A N4 C 10 1_555 A G 23 A O6 G 23 1_555 hydrog WATSON-CRICK A C 10 A O2 C 10 1_555 A G 23 A N2 G 23 1_555 hydrog WATSON-CRICK A 5BU 11 A N3 5BU 11 1_555 A A 22 A N1 A 22 1_555 hydrog WATSON-CRICK A 5BU 11 A O4 5BU 11 1_555 A A 22 A N6 A 22 1_555 hydrog 5BU-A PAIR A 5BU 11 A O2 5BU 11 1_555 A A 26 A N6 A 26 1_555 hydrog WATSON-CRICK A G 12 A N1 G 12 1_555 A C 21 A N3 C 21 1_555 hydrog WATSON-CRICK A G 12 A N2 G 12 1_555 A C 21 A O2 C 21 1_555 hydrog WATSON-CRICK A G 12 A O6 G 12 1_555 A C 21 A N4 C 21 1_555 hydrog WATSON-CRICK A G 13 A N1 G 13 1_555 A C 20 A N3 C 20 1_555 hydrog WATSON-CRICK A G 13 A N2 G 13 1_555 A C 20 A O2 C 20 1_555 hydrog WATSON-CRICK A G 13 A O6 G 13 1_555 A C 20 A N4 C 20 1_555 hydrog WATSON-CRICK A C 14 A N3 C 14 1_555 A G 19 A N1 G 19 1_555 hydrog WATSON-CRICK A C 14 A N4 C 14 1_555 A G 19 A O6 G 19 1_555 hydrog WATSON-CRICK A C 14 A O2 C 14 1_555 A G 19 A N2 G 19 1_555 hydrog G-A MISPAIR A G 15 A N2 G 15 1_555 A A 18 A N7 A 18 1_555 hydrog TYPE_10_PAIR A G 23 A N2 G 23 1_555 A A 27 A N1 A 27 1_555 hydrog TYPE_10_PAIR A G 23 A N3 G 23 1_555 A A 27 A N6 A 27 1_555 hydrog TYPE_7_PAIR A G 24 A N1 G 24 1_555 A G 29 A N7 G 29 1_555 hydrog TYPE_7_PAIR A G 24 A N2 G 24 1_555 A G 29 A O6 G 29 1_555 hydrog TYPE_10_PAIR A G 29 A N2 G 29 1_555 A A 31 A N1 A 31 1_555 hydrog TYPE_10_PAIR A G 29 A N3 G 29 1_555 A A 31 A N6 A 31 1_555 RNA U-TURN, BASE QUADRUPLE, BASE TRIPLE, GNRA TETRALOOP, 5-BROMO-URIDINE, RNA 1F1T PDB 1 1F1T 1 38 1F1T 1 38 1F1T A 1 1 38 BINDING SITE FOR RESIDUE SR A 201 A SR 201 Software 3 BINDING SITE FOR RESIDUE SR A 205 A SR 205 Software 2 BINDING SITE FOR RESIDUE SR A 206 A SR 206 Software 2 BINDING SITE FOR RESIDUE ROS A 101 A ROS 101 Software 6 A A 16 A A 16 3 6_434 A 5BU 32 A 5BU 32 3 1_555 A G 34 A G 34 3 1_555 A A 31 A A 31 2 1_555 A G 33 A G 33 2 1_555 A G 33 A G 33 2 1_555 A HOH 304 K HOH 2 1_555 A C 7 A C 7 6 1_555 A G 8 A G 8 6 1_555 A G 24 A G 24 6 1_555 A C 28 A C 28 6 1_555 A G 29 A G 29 6 1_555 A A 30 A A 30 6 1_555 179 hexagonal P 65 2 2