1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Goodfellow, B.J.
Macedo, A.L.
Rodrigues, P.
Wray, V.
Moura, I.
Moura, J.J.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
Fe3 S4
295.795
FE3-S4 CLUSTER
non-polymer
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
4
421
430
10.1007/s007750050328
10555576
The solution structure of a [3Fe-4S] ferredoxin: oxidised ferredoxin II from Desulfovibrio gigas.
1999
10.2210/pdb1f2g/pdb
pdb_00001f2g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6263.917
FERREDOXIN II
1
nat
polymer
295.795
FE3-S4 CLUSTER
1
syn
non-polymer
no
no
PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS
PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Desulfovibrio
sample
879
Desulfovibrio gigas
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1999-09-02
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-10-08
REL
REL
F3S
FE3-S4 CLUSTER
LOWEST TARGET FUNCTION
2000
15
NOESY
COSY
TOCSY
1D NOE
7.6
1
atm
300
K
TORSION ANGLE DYANAMICS
10% D2O/90% H2O
GUNTERT,WUTHRICH
refinement
DYANA
structure solution
DYANA
600
Bruker
DMX600
FS3
59
2
F3S
F3S
59
A
PRO
1
n
1
PRO
1
A
ILE
2
n
2
ILE
2
A
GLU
3
n
3
GLU
3
A
VAL
4
n
4
VAL
4
A
ASN
5
n
5
ASN
5
A
ASP
6
n
6
ASP
6
A
ASP
7
n
7
ASP
7
A
CYS
8
n
8
CYS
8
A
MET
9
n
9
MET
9
A
ALA
10
n
10
ALA
10
A
CYS
11
n
11
CYS
11
A
GLU
12
n
12
GLU
12
A
ALA
13
n
13
ALA
13
A
CYS
14
n
14
CYS
14
A
VAL
15
n
15
VAL
15
A
GLU
16
n
16
GLU
16
A
ILE
17
n
17
ILE
17
A
CYS
18
n
18
CYS
18
A
PRO
19
n
19
PRO
19
A
ASP
20
n
20
ASP
20
A
VAL
21
n
21
VAL
21
A
PHE
22
n
22
PHE
22
A
GLU
23
n
23
GLU
23
A
MET
24
n
24
MET
24
A
ASN
25
n
25
ASN
25
A
GLU
26
n
26
GLU
26
A
GLU
27
n
27
GLU
27
A
GLY
28
n
28
GLY
28
A
ASP
29
n
29
ASP
29
A
LYS
30
n
30
LYS
30
A
ALA
31
n
31
ALA
31
A
VAL
32
n
32
VAL
32
A
VAL
33
n
33
VAL
33
A
ILE
34
n
34
ILE
34
A
ASN
35
n
35
ASN
35
A
PRO
36
n
36
PRO
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
LEU
40
n
40
LEU
40
A
ASP
41
n
41
ASP
41
A
CYS
42
n
42
CYS
42
A
VAL
43
n
43
VAL
43
A
GLU
44
n
44
GLU
44
A
GLU
45
n
45
GLU
45
A
ALA
46
n
46
ALA
46
A
ILE
47
n
47
ILE
47
A
ASP
48
n
48
ASP
48
A
SER
49
n
49
SER
49
A
CYS
50
n
50
CYS
50
A
PRO
51
n
51
PRO
51
A
ALA
52
n
52
ALA
52
A
GLU
53
n
53
GLU
53
A
ALA
54
n
54
ALA
54
A
ILE
55
n
55
ILE
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
SER
58
n
58
SER
58
A
author_defined_assembly
1
monomeric
A
CYS
8
A
SG
CYS
8
1_555
A
F3S
59
B
FE1
F3S
1_555
A
F3S
59
B
S1
F3S
1_555
118.0
A
CYS
8
A
SG
CYS
8
1_555
A
F3S
59
B
FE1
F3S
1_555
A
F3S
59
B
S2
F3S
1_555
112.7
A
F3S
59
B
S1
F3S
1_555
A
F3S
59
B
FE1
F3S
1_555
A
F3S
59
B
S2
F3S
1_555
107.0
A
CYS
8
A
SG
CYS
8
1_555
A
F3S
59
B
FE1
F3S
1_555
A
F3S
59
B
S3
F3S
1_555
114.3
A
F3S
59
B
S1
F3S
1_555
A
F3S
59
B
FE1
F3S
1_555
A
F3S
59
B
S3
F3S
1_555
103.5
A
F3S
59
B
S2
F3S
1_555
A
F3S
59
B
FE1
F3S
1_555
A
F3S
59
B
S3
F3S
1_555
99.3
A
CYS
14
A
SG
CYS
14
1_555
A
F3S
59
B
FE4
F3S
1_555
A
F3S
59
B
S2
F3S
1_555
114.3
A
CYS
14
A
SG
CYS
14
1_555
A
F3S
59
B
FE4
F3S
1_555
A
F3S
59
B
S3
F3S
1_555
115.9
A
F3S
59
B
S2
F3S
1_555
A
F3S
59
B
FE4
F3S
1_555
A
F3S
59
B
S3
F3S
1_555
97.4
A
CYS
14
A
SG
CYS
14
1_555
A
F3S
59
B
FE4
F3S
1_555
A
F3S
59
B
S4
F3S
1_555
116.9
A
F3S
59
B
S2
F3S
1_555
A
F3S
59
B
FE4
F3S
1_555
A
F3S
59
B
S4
F3S
1_555
104.3
A
F3S
59
B
S3
F3S
1_555
A
F3S
59
B
FE4
F3S
1_555
A
F3S
59
B
S4
F3S
1_555
105.6
A
CYS
50
A
SG
CYS
50
1_555
A
F3S
59
B
FE3
F3S
1_555
A
F3S
59
B
S1
F3S
1_555
126.2
A
CYS
50
A
SG
CYS
50
1_555
A
F3S
59
B
FE3
F3S
1_555
A
F3S
59
B
S3
F3S
1_555
112.2
A
F3S
59
B
S1
F3S
1_555
A
F3S
59
B
FE3
F3S
1_555
A
F3S
59
B
S3
F3S
1_555
98.7
A
CYS
50
A
SG
CYS
50
1_555
A
F3S
59
B
FE3
F3S
1_555
A
F3S
59
B
S4
F3S
1_555
114.3
A
F3S
59
B
S1
F3S
1_555
A
F3S
59
B
FE3
F3S
1_555
A
F3S
59
B
S4
F3S
1_555
102.2
A
F3S
59
B
S3
F3S
1_555
A
F3S
59
B
FE3
F3S
1_555
A
F3S
59
B
S4
F3S
1_555
98.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
23
A
O
GLU
23
A
N
VAL
32
A
N
VAL
32
2
A
A
SG
S4
CYS
F3S
14
59
1.26
3
A
A
SG
S4
CYS
F3S
14
59
1.22
3
A
A
OD1
H
ASN
GLU
25
27
1.53
4
A
A
HA
OXT
PRO
SER
1
58
1.51
5
A
A
O
H
ASP
GLU
41
44
1.59
14
A
A
O
HG
GLU
SER
45
49
1.59
1
A
ASN
5
60.30
-169.84
1
A
MET
9
-108.64
-84.61
1
A
ALA
10
168.00
59.56
1
A
ASN
25
-60.89
-144.88
1
A
PRO
36
-75.00
35.09
1
A
ASP
37
175.23
42.68
1
A
SER
38
-58.93
-162.95
1
A
ASP
39
-170.59
32.94
1
A
GLU
53
36.19
45.41
1
A
ARG
57
-87.74
43.22
2
A
MET
9
-98.50
-68.06
2
A
ALA
10
167.78
48.67
2
A
ASN
25
-61.18
-155.71
2
A
PRO
36
-74.93
32.84
2
A
ASP
37
177.26
40.65
2
A
LEU
40
-85.99
-144.70
2
A
ASP
41
-140.37
13.38
2
A
GLU
53
37.73
50.56
2
A
ARG
57
-90.31
35.70
3
A
ASN
5
63.97
-171.12
3
A
CYS
8
-47.98
162.12
3
A
MET
9
-103.01
-77.36
3
A
ALA
10
168.80
41.49
3
A
GLU
12
58.85
17.93
3
A
ILE
17
-133.95
-43.66
3
A
MET
24
-40.92
153.10
3
A
ASN
25
-91.48
-150.85
3
A
GLU
27
-154.56
31.07
3
A
LYS
30
-167.33
109.20
3
A
ALA
31
-48.75
104.62
3
A
PRO
36
-74.94
37.58
3
A
ASP
37
179.17
40.13
3
A
SER
38
-83.43
-76.88
3
A
LEU
40
-108.97
44.16
3
A
ASP
41
79.49
-51.35
3
A
GLU
53
38.22
38.45
3
A
ARG
57
-95.87
48.87
4
A
GLU
3
-135.31
-156.13
4
A
VAL
4
-127.36
-104.66
4
A
ASN
5
178.01
-171.04
4
A
CYS
8
-45.38
162.36
4
A
MET
9
-106.69
-86.35
4
A
ALA
10
166.50
61.17
4
A
GLU
16
-85.00
41.40
4
A
ILE
17
-170.37
-40.66
4
A
MET
24
-40.43
163.04
4
A
ASN
25
-84.69
-149.18
4
A
GLU
27
-152.17
19.14
4
A
PRO
36
-74.95
26.25
4
A
ASP
37
178.41
39.07
4
A
SER
38
-36.49
-72.66
4
A
LEU
40
-66.87
-141.86
4
A
GLU
53
38.43
37.02
4
A
ARG
57
-100.82
40.48
5
A
ASN
5
62.12
-169.71
5
A
MET
9
-100.45
-85.05
5
A
ALA
10
163.06
51.90
5
A
ASN
25
-79.03
-150.26
5
A
ALA
31
-57.41
109.27
5
A
PRO
36
-75.05
37.36
5
A
ASP
37
174.06
44.03
5
A
SER
38
-58.43
-163.95
5
A
ASP
39
-171.47
32.91
5
A
GLU
53
38.90
34.35
6
A
ILE
2
-55.68
-172.00
6
A
ASN
5
46.02
-170.98
6
A
MET
9
-108.11
-92.68
6
A
ALA
10
173.59
41.62
6
A
ILE
17
-148.41
-46.55
6
A
MET
24
-33.94
142.12
6
A
ASN
25
-70.64
-156.31
6
A
ALA
31
-68.61
95.34
6
A
PRO
36
-74.99
28.56
6
A
ASP
37
-172.73
34.14
6
A
SER
38
-50.75
-95.91
6
A
ASP
41
87.11
-37.12
6
A
GLU
53
34.17
45.76
7
A
ASN
5
-119.94
-159.19
7
A
MET
9
-102.88
-93.52
7
A
ALA
10
170.98
41.34
7
A
GLU
16
-83.93
38.39
7
A
ILE
17
-165.88
-42.50
7
A
ASN
25
-60.83
-143.03
7
A
GLU
27
-140.35
11.70
7
A
ASN
35
-117.41
79.72
7
A
PRO
36
-75.04
39.09
7
A
ASP
37
170.79
42.45
7
A
SER
38
-69.77
-165.95
7
A
ASP
39
-171.79
33.69
7
A
GLU
53
37.73
35.74
7
A
ARG
57
-104.99
48.13
8
A
ILE
2
-55.46
-176.37
8
A
ASN
5
-53.83
-172.37
8
A
ASP
7
-39.07
-31.63
8
A
MET
9
-104.81
-82.94
8
A
ALA
10
166.83
62.47
8
A
CYS
18
-151.10
75.26
8
A
MET
24
-35.32
151.47
8
A
ASN
25
-63.64
-143.66
8
A
GLU
27
-144.62
15.38
8
A
PRO
36
-74.91
25.92
8
A
ASP
37
-174.11
38.77
8
A
SER
38
-31.03
-87.99
8
A
ASP
39
81.61
24.87
8
A
ASP
41
-94.58
49.14
8
A
GLU
53
31.84
48.99
9
A
ILE
2
-44.17
165.85
9
A
ASN
5
-91.95
-148.16
9
A
MET
9
-107.25
-70.62
9
A
ALA
10
164.57
67.41
9
A
MET
24
-39.23
151.81
9
A
ASN
25
-66.64
-147.09
9
A
GLU
27
-142.06
11.32
9
A
LYS
30
-169.49
104.81
9
A
PRO
36
-74.95
36.87
9
A
ASP
37
170.97
41.19
9
A
SER
38
-63.03
-167.52
9
A
ASP
39
-171.22
32.44
9
A
LEU
40
-97.28
-148.47
9
A
GLU
53
36.65
34.02
10
A
VAL
4
-130.62
-110.19
10
A
ASN
5
175.82
-171.52
10
A
MET
9
-100.54
-88.31
10
A
ALA
10
174.14
41.85
10
A
GLU
12
59.36
17.97
10
A
ASN
25
-61.94
-147.15
10
A
LYS
30
-171.62
133.01
10
A
PRO
36
-74.99
29.76
10
A
ASP
37
-177.87
48.53
10
A
SER
38
-59.12
-161.98
10
A
ASP
39
-171.38
32.11
10
A
LEU
40
-107.38
-169.07
10
A
GLU
53
35.93
36.11
11
A
ALA
10
87.74
70.08
11
A
GLU
12
90.05
7.87
11
A
CYS
18
-160.54
83.77
11
A
ASN
25
-59.75
-154.12
11
A
PRO
36
-74.99
24.63
11
A
ASP
37
-175.72
36.76
11
A
SER
38
-22.75
-77.59
11
A
ASP
39
86.11
15.93
11
A
GLU
53
34.12
45.34
11
A
ARG
57
-104.12
51.98
12
A
MET
9
-108.04
-70.94
12
A
ALA
10
162.96
58.75
12
A
GLU
12
59.54
14.16
12
A
ASN
25
-64.86
-157.12
12
A
ALA
31
-68.24
99.65
12
A
PRO
36
-75.05
40.10
12
A
ASP
37
177.44
37.86
12
A
SER
38
-58.72
-83.63
12
A
ASP
41
87.49
-36.90
12
A
GLU
53
34.81
46.28
12
A
ARG
57
-104.68
51.54
13
A
ASN
5
56.29
-172.88
13
A
MET
9
-102.83
-84.66
13
A
ALA
10
162.45
59.84
13
A
MET
24
-37.74
148.97
13
A
ASN
25
-60.60
-143.22
13
A
PRO
36
-75.07
38.75
13
A
ASP
37
174.21
41.37
13
A
SER
38
-82.31
-81.36
13
A
ASP
41
90.71
2.54
13
A
GLU
53
32.98
45.87
14
A
ALA
10
90.88
65.79
14
A
MET
24
-38.04
156.28
14
A
ASN
25
-75.21
-147.95
14
A
GLU
27
-149.56
15.44
14
A
LYS
30
-169.23
89.00
14
A
ALA
31
-39.33
121.78
14
A
PRO
36
-74.98
33.43
14
A
ASP
37
171.24
42.24
14
A
SER
38
-63.09
-169.15
14
A
ASP
39
-167.61
30.50
14
A
GLU
53
35.58
45.73
15
A
ILE
2
-50.60
-179.87
15
A
VAL
4
-136.32
-44.64
15
A
ASN
5
82.81
-171.57
15
A
MET
9
-98.86
-90.46
15
A
ALA
10
162.27
50.30
15
A
ASN
25
-67.46
-155.95
15
A
ASN
35
-117.95
79.09
15
A
PRO
36
-74.97
38.39
15
A
ASP
37
172.55
43.36
15
A
SER
38
-65.97
-164.23
15
A
ASP
39
-171.48
33.54
15
A
GLU
53
34.51
45.86
model building
DYANA
refinement
DYANA
THE NMR SOLUTION STRUCTURE OF THE 3FE FERREDOXIN II FROM DESULFOVIBRIO GIGAS, 15 STRUCTURES
1
Y
N
2
N
N
A
ALA
13
A
ALA
13
HELX_P
A
ILE
17
A
ILE
17
1
1
5
A
ASP
41
A
ASP
41
HELX_P
A
ASP
48
A
ASP
48
5
2
8
disulf
2.080
A
CYS
18
A
SG
CYS
18
1_555
A
CYS
42
A
SG
CYS
42
1_555
metalc
2.300
A
CYS
8
A
SG
CYS
8
1_555
A
F3S
59
B
FE1
F3S
1_555
metalc
2.300
A
CYS
14
A
SG
CYS
14
1_555
A
F3S
59
B
FE4
F3S
1_555
metalc
2.299
A
CYS
50
A
SG
CYS
50
1_555
A
F3S
59
B
FE3
F3S
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, FDII DESULFOVIBRIO GIGAS, FERREDOXIN II
FER_DESGI
UNP
1
1
P00209
PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS
1
58
1F2G
1
58
P00209
A
1
1
58
2
anti-parallel
A
PHE
22
A
PHE
22
A
MET
24
A
MET
24
A
ALA
31
A
ALA
31
A
VAL
33
A
VAL
33
BINDING SITE FOR RESIDUE F3S A 59
A
F3S
59
Software
9
A
VAL
4
A
VAL
4
9
1_555
A
CYS
8
A
CYS
8
9
1_555
A
CYS
11
A
CYS
11
9
1_555
A
GLU
12
A
GLU
12
9
1_555
A
ALA
13
A
ALA
13
9
1_555
A
CYS
14
A
CYS
14
9
1_555
A
ALA
31
A
ALA
31
9
1_555
A
CYS
50
A
CYS
50
9
1_555
A
ILE
55
A
ILE
55
9
1_555
1
P 1