1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Goodfellow, B.J. Macedo, A.L. Rodrigues, P. Wray, V. Moura, I. Moura, J.J.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe3 S4 295.795 FE3-S4 CLUSTER non-polymer C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 4 421 430 10.1007/s007750050328 10555576 The solution structure of a [3Fe-4S] ferredoxin: oxidised ferredoxin II from Desulfovibrio gigas. 1999 10.2210/pdb1f2g/pdb pdb_00001f2g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 6263.917 FERREDOXIN II 1 nat polymer 295.795 FE3-S4 CLUSTER 1 syn non-polymer no no PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Desulfovibrio sample 879 Desulfovibrio gigas database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1999-09-02 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-10-08 REL REL F3S FE3-S4 CLUSTER LOWEST TARGET FUNCTION 2000 15 NOESY COSY TOCSY 1D NOE 7.6 1 atm 300 K TORSION ANGLE DYANAMICS 10% D2O/90% H2O GUNTERT,WUTHRICH refinement DYANA structure solution DYANA 600 Bruker DMX600 FS3 59 2 F3S F3S 59 A PRO 1 n 1 PRO 1 A ILE 2 n 2 ILE 2 A GLU 3 n 3 GLU 3 A VAL 4 n 4 VAL 4 A ASN 5 n 5 ASN 5 A ASP 6 n 6 ASP 6 A ASP 7 n 7 ASP 7 A CYS 8 n 8 CYS 8 A MET 9 n 9 MET 9 A ALA 10 n 10 ALA 10 A CYS 11 n 11 CYS 11 A GLU 12 n 12 GLU 12 A ALA 13 n 13 ALA 13 A CYS 14 n 14 CYS 14 A VAL 15 n 15 VAL 15 A GLU 16 n 16 GLU 16 A ILE 17 n 17 ILE 17 A CYS 18 n 18 CYS 18 A PRO 19 n 19 PRO 19 A ASP 20 n 20 ASP 20 A VAL 21 n 21 VAL 21 A PHE 22 n 22 PHE 22 A GLU 23 n 23 GLU 23 A MET 24 n 24 MET 24 A ASN 25 n 25 ASN 25 A GLU 26 n 26 GLU 26 A GLU 27 n 27 GLU 27 A GLY 28 n 28 GLY 28 A ASP 29 n 29 ASP 29 A LYS 30 n 30 LYS 30 A ALA 31 n 31 ALA 31 A VAL 32 n 32 VAL 32 A VAL 33 n 33 VAL 33 A ILE 34 n 34 ILE 34 A ASN 35 n 35 ASN 35 A PRO 36 n 36 PRO 36 A ASP 37 n 37 ASP 37 A SER 38 n 38 SER 38 A ASP 39 n 39 ASP 39 A LEU 40 n 40 LEU 40 A ASP 41 n 41 ASP 41 A CYS 42 n 42 CYS 42 A VAL 43 n 43 VAL 43 A GLU 44 n 44 GLU 44 A GLU 45 n 45 GLU 45 A ALA 46 n 46 ALA 46 A ILE 47 n 47 ILE 47 A ASP 48 n 48 ASP 48 A SER 49 n 49 SER 49 A CYS 50 n 50 CYS 50 A PRO 51 n 51 PRO 51 A ALA 52 n 52 ALA 52 A GLU 53 n 53 GLU 53 A ALA 54 n 54 ALA 54 A ILE 55 n 55 ILE 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A SER 58 n 58 SER 58 A author_defined_assembly 1 monomeric A CYS 8 A SG CYS 8 1_555 A F3S 59 B FE1 F3S 1_555 A F3S 59 B S1 F3S 1_555 118.0 A CYS 8 A SG CYS 8 1_555 A F3S 59 B FE1 F3S 1_555 A F3S 59 B S2 F3S 1_555 112.7 A F3S 59 B S1 F3S 1_555 A F3S 59 B FE1 F3S 1_555 A F3S 59 B S2 F3S 1_555 107.0 A CYS 8 A SG CYS 8 1_555 A F3S 59 B FE1 F3S 1_555 A F3S 59 B S3 F3S 1_555 114.3 A F3S 59 B S1 F3S 1_555 A F3S 59 B FE1 F3S 1_555 A F3S 59 B S3 F3S 1_555 103.5 A F3S 59 B S2 F3S 1_555 A F3S 59 B FE1 F3S 1_555 A F3S 59 B S3 F3S 1_555 99.3 A CYS 14 A SG CYS 14 1_555 A F3S 59 B FE4 F3S 1_555 A F3S 59 B S2 F3S 1_555 114.3 A CYS 14 A SG CYS 14 1_555 A F3S 59 B FE4 F3S 1_555 A F3S 59 B S3 F3S 1_555 115.9 A F3S 59 B S2 F3S 1_555 A F3S 59 B FE4 F3S 1_555 A F3S 59 B S3 F3S 1_555 97.4 A CYS 14 A SG CYS 14 1_555 A F3S 59 B FE4 F3S 1_555 A F3S 59 B S4 F3S 1_555 116.9 A F3S 59 B S2 F3S 1_555 A F3S 59 B FE4 F3S 1_555 A F3S 59 B S4 F3S 1_555 104.3 A F3S 59 B S3 F3S 1_555 A F3S 59 B FE4 F3S 1_555 A F3S 59 B S4 F3S 1_555 105.6 A CYS 50 A SG CYS 50 1_555 A F3S 59 B FE3 F3S 1_555 A F3S 59 B S1 F3S 1_555 126.2 A CYS 50 A SG CYS 50 1_555 A F3S 59 B FE3 F3S 1_555 A F3S 59 B S3 F3S 1_555 112.2 A F3S 59 B S1 F3S 1_555 A F3S 59 B FE3 F3S 1_555 A F3S 59 B S3 F3S 1_555 98.7 A CYS 50 A SG CYS 50 1_555 A F3S 59 B FE3 F3S 1_555 A F3S 59 B S4 F3S 1_555 114.3 A F3S 59 B S1 F3S 1_555 A F3S 59 B FE3 F3S 1_555 A F3S 59 B S4 F3S 1_555 102.2 A F3S 59 B S3 F3S 1_555 A F3S 59 B FE3 F3S 1_555 A F3S 59 B S4 F3S 1_555 98.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 23 A O GLU 23 A N VAL 32 A N VAL 32 2 A A SG S4 CYS F3S 14 59 1.26 3 A A SG S4 CYS F3S 14 59 1.22 3 A A OD1 H ASN GLU 25 27 1.53 4 A A HA OXT PRO SER 1 58 1.51 5 A A O H ASP GLU 41 44 1.59 14 A A O HG GLU SER 45 49 1.59 1 A ASN 5 60.30 -169.84 1 A MET 9 -108.64 -84.61 1 A ALA 10 168.00 59.56 1 A ASN 25 -60.89 -144.88 1 A PRO 36 -75.00 35.09 1 A ASP 37 175.23 42.68 1 A SER 38 -58.93 -162.95 1 A ASP 39 -170.59 32.94 1 A GLU 53 36.19 45.41 1 A ARG 57 -87.74 43.22 2 A MET 9 -98.50 -68.06 2 A ALA 10 167.78 48.67 2 A ASN 25 -61.18 -155.71 2 A PRO 36 -74.93 32.84 2 A ASP 37 177.26 40.65 2 A LEU 40 -85.99 -144.70 2 A ASP 41 -140.37 13.38 2 A GLU 53 37.73 50.56 2 A ARG 57 -90.31 35.70 3 A ASN 5 63.97 -171.12 3 A CYS 8 -47.98 162.12 3 A MET 9 -103.01 -77.36 3 A ALA 10 168.80 41.49 3 A GLU 12 58.85 17.93 3 A ILE 17 -133.95 -43.66 3 A MET 24 -40.92 153.10 3 A ASN 25 -91.48 -150.85 3 A GLU 27 -154.56 31.07 3 A LYS 30 -167.33 109.20 3 A ALA 31 -48.75 104.62 3 A PRO 36 -74.94 37.58 3 A ASP 37 179.17 40.13 3 A SER 38 -83.43 -76.88 3 A LEU 40 -108.97 44.16 3 A ASP 41 79.49 -51.35 3 A GLU 53 38.22 38.45 3 A ARG 57 -95.87 48.87 4 A GLU 3 -135.31 -156.13 4 A VAL 4 -127.36 -104.66 4 A ASN 5 178.01 -171.04 4 A CYS 8 -45.38 162.36 4 A MET 9 -106.69 -86.35 4 A ALA 10 166.50 61.17 4 A GLU 16 -85.00 41.40 4 A ILE 17 -170.37 -40.66 4 A MET 24 -40.43 163.04 4 A ASN 25 -84.69 -149.18 4 A GLU 27 -152.17 19.14 4 A PRO 36 -74.95 26.25 4 A ASP 37 178.41 39.07 4 A SER 38 -36.49 -72.66 4 A LEU 40 -66.87 -141.86 4 A GLU 53 38.43 37.02 4 A ARG 57 -100.82 40.48 5 A ASN 5 62.12 -169.71 5 A MET 9 -100.45 -85.05 5 A ALA 10 163.06 51.90 5 A ASN 25 -79.03 -150.26 5 A ALA 31 -57.41 109.27 5 A PRO 36 -75.05 37.36 5 A ASP 37 174.06 44.03 5 A SER 38 -58.43 -163.95 5 A ASP 39 -171.47 32.91 5 A GLU 53 38.90 34.35 6 A ILE 2 -55.68 -172.00 6 A ASN 5 46.02 -170.98 6 A MET 9 -108.11 -92.68 6 A ALA 10 173.59 41.62 6 A ILE 17 -148.41 -46.55 6 A MET 24 -33.94 142.12 6 A ASN 25 -70.64 -156.31 6 A ALA 31 -68.61 95.34 6 A PRO 36 -74.99 28.56 6 A ASP 37 -172.73 34.14 6 A SER 38 -50.75 -95.91 6 A ASP 41 87.11 -37.12 6 A GLU 53 34.17 45.76 7 A ASN 5 -119.94 -159.19 7 A MET 9 -102.88 -93.52 7 A ALA 10 170.98 41.34 7 A GLU 16 -83.93 38.39 7 A ILE 17 -165.88 -42.50 7 A ASN 25 -60.83 -143.03 7 A GLU 27 -140.35 11.70 7 A ASN 35 -117.41 79.72 7 A PRO 36 -75.04 39.09 7 A ASP 37 170.79 42.45 7 A SER 38 -69.77 -165.95 7 A ASP 39 -171.79 33.69 7 A GLU 53 37.73 35.74 7 A ARG 57 -104.99 48.13 8 A ILE 2 -55.46 -176.37 8 A ASN 5 -53.83 -172.37 8 A ASP 7 -39.07 -31.63 8 A MET 9 -104.81 -82.94 8 A ALA 10 166.83 62.47 8 A CYS 18 -151.10 75.26 8 A MET 24 -35.32 151.47 8 A ASN 25 -63.64 -143.66 8 A GLU 27 -144.62 15.38 8 A PRO 36 -74.91 25.92 8 A ASP 37 -174.11 38.77 8 A SER 38 -31.03 -87.99 8 A ASP 39 81.61 24.87 8 A ASP 41 -94.58 49.14 8 A GLU 53 31.84 48.99 9 A ILE 2 -44.17 165.85 9 A ASN 5 -91.95 -148.16 9 A MET 9 -107.25 -70.62 9 A ALA 10 164.57 67.41 9 A MET 24 -39.23 151.81 9 A ASN 25 -66.64 -147.09 9 A GLU 27 -142.06 11.32 9 A LYS 30 -169.49 104.81 9 A PRO 36 -74.95 36.87 9 A ASP 37 170.97 41.19 9 A SER 38 -63.03 -167.52 9 A ASP 39 -171.22 32.44 9 A LEU 40 -97.28 -148.47 9 A GLU 53 36.65 34.02 10 A VAL 4 -130.62 -110.19 10 A ASN 5 175.82 -171.52 10 A MET 9 -100.54 -88.31 10 A ALA 10 174.14 41.85 10 A GLU 12 59.36 17.97 10 A ASN 25 -61.94 -147.15 10 A LYS 30 -171.62 133.01 10 A PRO 36 -74.99 29.76 10 A ASP 37 -177.87 48.53 10 A SER 38 -59.12 -161.98 10 A ASP 39 -171.38 32.11 10 A LEU 40 -107.38 -169.07 10 A GLU 53 35.93 36.11 11 A ALA 10 87.74 70.08 11 A GLU 12 90.05 7.87 11 A CYS 18 -160.54 83.77 11 A ASN 25 -59.75 -154.12 11 A PRO 36 -74.99 24.63 11 A ASP 37 -175.72 36.76 11 A SER 38 -22.75 -77.59 11 A ASP 39 86.11 15.93 11 A GLU 53 34.12 45.34 11 A ARG 57 -104.12 51.98 12 A MET 9 -108.04 -70.94 12 A ALA 10 162.96 58.75 12 A GLU 12 59.54 14.16 12 A ASN 25 -64.86 -157.12 12 A ALA 31 -68.24 99.65 12 A PRO 36 -75.05 40.10 12 A ASP 37 177.44 37.86 12 A SER 38 -58.72 -83.63 12 A ASP 41 87.49 -36.90 12 A GLU 53 34.81 46.28 12 A ARG 57 -104.68 51.54 13 A ASN 5 56.29 -172.88 13 A MET 9 -102.83 -84.66 13 A ALA 10 162.45 59.84 13 A MET 24 -37.74 148.97 13 A ASN 25 -60.60 -143.22 13 A PRO 36 -75.07 38.75 13 A ASP 37 174.21 41.37 13 A SER 38 -82.31 -81.36 13 A ASP 41 90.71 2.54 13 A GLU 53 32.98 45.87 14 A ALA 10 90.88 65.79 14 A MET 24 -38.04 156.28 14 A ASN 25 -75.21 -147.95 14 A GLU 27 -149.56 15.44 14 A LYS 30 -169.23 89.00 14 A ALA 31 -39.33 121.78 14 A PRO 36 -74.98 33.43 14 A ASP 37 171.24 42.24 14 A SER 38 -63.09 -169.15 14 A ASP 39 -167.61 30.50 14 A GLU 53 35.58 45.73 15 A ILE 2 -50.60 -179.87 15 A VAL 4 -136.32 -44.64 15 A ASN 5 82.81 -171.57 15 A MET 9 -98.86 -90.46 15 A ALA 10 162.27 50.30 15 A ASN 25 -67.46 -155.95 15 A ASN 35 -117.95 79.09 15 A PRO 36 -74.97 38.39 15 A ASP 37 172.55 43.36 15 A SER 38 -65.97 -164.23 15 A ASP 39 -171.48 33.54 15 A GLU 53 34.51 45.86 model building DYANA refinement DYANA THE NMR SOLUTION STRUCTURE OF THE 3FE FERREDOXIN II FROM DESULFOVIBRIO GIGAS, 15 STRUCTURES 1 Y N 2 N N A ALA 13 A ALA 13 HELX_P A ILE 17 A ILE 17 1 1 5 A ASP 41 A ASP 41 HELX_P A ASP 48 A ASP 48 5 2 8 disulf 2.080 A CYS 18 A SG CYS 18 1_555 A CYS 42 A SG CYS 42 1_555 metalc 2.300 A CYS 8 A SG CYS 8 1_555 A F3S 59 B FE1 F3S 1_555 metalc 2.300 A CYS 14 A SG CYS 14 1_555 A F3S 59 B FE4 F3S 1_555 metalc 2.299 A CYS 50 A SG CYS 50 1_555 A F3S 59 B FE3 F3S 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, FDII DESULFOVIBRIO GIGAS, FERREDOXIN II FER_DESGI UNP 1 1 P00209 PIEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 1 58 1F2G 1 58 P00209 A 1 1 58 2 anti-parallel A PHE 22 A PHE 22 A MET 24 A MET 24 A ALA 31 A ALA 31 A VAL 33 A VAL 33 BINDING SITE FOR RESIDUE F3S A 59 A F3S 59 Software 9 A VAL 4 A VAL 4 9 1_555 A CYS 8 A CYS 8 9 1_555 A CYS 11 A CYS 11 9 1_555 A GLU 12 A GLU 12 9 1_555 A ALA 13 A ALA 13 9 1_555 A CYS 14 A CYS 14 9 1_555 A ALA 31 A ALA 31 9 1_555 A CYS 50 A CYS 50 9 1_555 A ILE 55 A ILE 55 9 1_555 1 P 1