1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Anderson, J.S. Forman, M. Modleski, S. Dahlquist, F.W. Baxter, S.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 39 10045 10054 10.1021/bi000677z 10955992 Cooperative ordering in homeodomain-DNA recognition: solution structure and dynamics of the MATa1 homeodomain. 2000 10.2210/pdb1f43/pdb pdb_00001f43 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 7164.493 MATING-TYPE PROTEIN A-1 HOMEODOMAIN, C-TERMINAL DOMAIN (66-126) 1 man polymer no no KKEKSPKGKSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK KKEKSPKGKSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample 4932 Saccharomyces cerevisiae 562 Escherichia coli PLASMID PCW/AL66-126 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-07-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model 1YRN contains the same protein complexed with MATalpha2 homeodomain and DNA RCSB Y RCSB 2000-06-07 REL REL target function 100 20 3D_15N-separated_NOESY HNHA HNCA-J 2D NOESY DQF-COSY 100 mM KCl 4.5 ambient 298 K 100 mM KCl 4.5 ambient 298 K 100 mM KCl 4.5 ambient 298 K The structure is based on a total of 1178 NOE-derived distance constraints, 38 dihedral angle constraints, and 42 hydrogen bond restraints. distance geometry and simulated annealing 17 closest to the average 1.5 mM MATa1(66-126) U-15N,13C 25 mM deuterated acetate, pH 4.5, 100 mM KCl, 0.01% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 1.5 mM MATa1 (66-126) U-15N 25 mM deuterated acetate, pH 4.5, 100 mM KCl, 0.01% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 1.5 mM MATa1 (66-126) 25 mM deuterated acetate, pH 4.5, 100 mM KCl, 0.01% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O Bruker Instruments collection XwinNMR 2.3 Molecular Simulations, Inc. data analysis Felix 970 Molecular Simulations, Inc. processing Felix 970 A. Brunger refinement X-PLOR 3.851 600 Bruker AVANCE 500 Bruker AVANCE LYS -3 n 1 LYS -3 A LYS -2 n 2 LYS -2 A GLU -1 n 3 GLU -1 A LYS 0 n 4 LYS 0 A SER 1 n 5 SER 1 A PRO 2 n 6 PRO 2 A LYS 3 n 7 LYS 3 A GLY 4 n 8 GLY 4 A LYS 5 n 9 LYS 5 A SER 6 n 10 SER 6 A SER 7 n 11 SER 7 A ILE 8 n 12 ILE 8 A SER 9 n 13 SER 9 A PRO 10 n 14 PRO 10 A GLN 11 n 15 GLN 11 A ALA 12 n 16 ALA 12 A ARG 13 n 17 ARG 13 A ALA 14 n 18 ALA 14 A PHE 15 n 19 PHE 15 A LEU 16 n 20 LEU 16 A GLU 17 n 21 GLU 17 A GLN 18 n 22 GLN 18 A VAL 19 n 23 VAL 19 A PHE 20 n 24 PHE 20 A ARG 21 n 25 ARG 21 A ARG 22 n 26 ARG 22 A LYS 23 n 27 LYS 23 A GLN 24 n 28 GLN 24 A SER 25 n 29 SER 25 A LEU 26 n 30 LEU 26 A ASN 27 n 31 ASN 27 A SER 28 n 32 SER 28 A LYS 29 n 33 LYS 29 A GLU 30 n 34 GLU 30 A LYS 31 n 35 LYS 31 A GLU 32 n 36 GLU 32 A GLU 33 n 37 GLU 33 A VAL 34 n 38 VAL 34 A ALA 35 n 39 ALA 35 A LYS 36 n 40 LYS 36 A LYS 37 n 41 LYS 37 A CYS 38 n 42 CYS 38 A GLY 39 n 43 GLY 39 A ILE 40 n 44 ILE 40 A THR 41 n 45 THR 41 A PRO 42 n 46 PRO 42 A LEU 43 n 47 LEU 43 A GLN 44 n 48 GLN 44 A VAL 45 n 49 VAL 45 A ARG 46 n 50 ARG 46 A VAL 47 n 51 VAL 47 A TRP 48 n 52 TRP 48 A PHE 49 n 53 PHE 49 A ILE 50 n 54 ILE 50 A ASN 51 n 55 ASN 51 A LYS 52 n 56 LYS 52 A ARG 53 n 57 ARG 53 A MET 54 n 58 MET 54 A ARG 55 n 59 ARG 55 A SER 56 n 60 SER 56 A LYS 57 n 61 LYS 57 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H ASN LYS 27 31 1.52 1 A A O H GLN PHE 11 15 1.54 1 A A O H GLN TRP 44 48 1.55 1 A A O H GLU VAL 30 34 1.55 2 A A O H GLN TRP 44 48 1.52 2 A A O H ASN LYS 27 31 1.53 2 A A O H GLN PHE 11 15 1.53 2 A A O H GLU VAL 30 34 1.56 3 A A O H GLN TRP 44 48 1.52 3 A A O H ASN LYS 27 31 1.52 3 A A O H GLU VAL 30 34 1.54 3 A A O H GLN PHE 11 15 1.55 4 A A O H ASN LYS 27 31 1.49 4 A A O H GLN TRP 44 48 1.52 4 A A O H GLU VAL 30 34 1.53 4 A A O H GLN PHE 11 15 1.55 5 A A O H ASN LYS 27 31 1.49 5 A A O H GLN TRP 44 48 1.53 5 A A O H GLU VAL 30 34 1.54 5 A A O H GLN PHE 11 15 1.54 6 A A O H GLN TRP 44 48 1.52 6 A A O H ASN LYS 27 31 1.53 6 A A O H GLN PHE 11 15 1.53 6 A A O H GLU VAL 30 34 1.56 7 A A O H ASN LYS 27 31 1.49 7 A A O H GLN TRP 44 48 1.52 7 A A O H GLN PHE 11 15 1.53 7 A A O H GLU VAL 30 34 1.53 7 A A HZ1 O LYS SER 23 25 1.58 8 A A O H GLN TRP 44 48 1.50 8 A A O H ASN LYS 27 31 1.51 8 A A O H GLN PHE 11 15 1.53 8 A A O H GLU VAL 30 34 1.56 9 A A O H ASN LYS 27 31 1.51 9 A A O H GLN TRP 44 48 1.53 9 A A O H GLN PHE 11 15 1.54 9 A A O H GLU VAL 30 34 1.54 10 A A O H GLN TRP 44 48 1.49 10 A A O H ASN LYS 27 31 1.51 10 A A O H GLU VAL 30 34 1.54 10 A A O H GLN PHE 11 15 1.55 11 A A O H GLN TRP 44 48 1.47 11 A A O H ASN LYS 27 31 1.49 11 A A O H GLN PHE 11 15 1.51 11 A A O H GLU VAL 30 34 1.53 12 A A O H GLN TRP 44 48 1.48 12 A A O H ASN LYS 27 31 1.50 12 A A O H GLN PHE 11 15 1.53 12 A A O H GLU VAL 30 34 1.53 13 A A O H ASN LYS 27 31 1.51 13 A A O H GLN PHE 11 15 1.51 13 A A O H GLU VAL 30 34 1.54 13 A A O H GLN TRP 44 48 1.54 14 A A O H ASN LYS 27 31 1.49 14 A A O H GLN PHE 11 15 1.54 14 A A O H GLU VAL 30 34 1.54 15 A A O H GLN PHE 11 15 1.48 15 A A O H ASN LYS 27 31 1.50 15 A A O H GLN TRP 44 48 1.50 15 A A O H GLU VAL 30 34 1.56 16 A A O H ASN LYS 27 31 1.48 16 A A O H GLN PHE 11 15 1.48 16 A A O H GLN TRP 44 48 1.52 16 A A O H GLU VAL 30 34 1.55 17 A A O H GLN TRP 44 48 1.50 17 A A O H ASN LYS 27 31 1.50 17 A A O H GLU VAL 30 34 1.55 17 A A O H GLN PHE 11 15 1.55 18 A A O H GLN TRP 44 48 1.48 18 A A O H ASN LYS 27 31 1.48 18 A A O H GLU VAL 30 34 1.51 18 A A O H GLN PHE 11 15 1.56 19 A A O H GLN PHE 11 15 1.47 19 A A O H GLN TRP 44 48 1.50 19 A A O H ASN LYS 27 31 1.50 19 A A O H GLU VAL 30 34 1.56 20 A A O H GLN TRP 44 48 1.48 20 A A O H GLN PHE 11 15 1.50 20 A A O H ASN LYS 27 31 1.51 20 A A O H GLU VAL 30 34 1.55 1 A LYS -2 61.29 104.70 1 A GLU -1 -97.48 -74.06 1 A LYS 0 -165.47 103.52 1 A SER 1 -162.49 90.67 1 A SER 6 64.71 -78.59 1 A SER 9 -54.31 -177.49 1 A LYS 23 -170.16 -147.57 1 A GLN 24 -140.41 -51.96 1 A ILE 40 -109.97 -163.91 1 A VAL 45 -36.67 -32.61 1 A ARG 53 -179.84 33.20 1 A MET 54 -52.92 88.33 2 A SER 1 -175.78 -61.99 2 A SER 6 -67.71 -80.92 2 A SER 7 47.42 -167.04 2 A SER 9 -55.15 -176.68 2 A LYS 23 -169.95 -145.79 2 A GLN 24 -144.59 -50.04 2 A ILE 40 -112.55 -164.04 2 A VAL 45 -36.32 -32.82 2 A ARG 53 -177.50 31.27 2 A MET 54 -53.54 86.25 3 A SER 1 58.97 161.67 3 A PRO 2 -57.96 84.16 3 A LYS 3 -170.19 146.88 3 A LYS 5 -141.46 -58.13 3 A SER 7 -123.62 -69.15 3 A SER 9 -54.97 -175.45 3 A LYS 23 -163.33 -147.87 3 A GLN 24 -139.05 -49.43 3 A ILE 40 -109.78 -162.59 3 A VAL 45 -36.27 -33.25 3 A ARG 53 -170.57 32.35 3 A MET 54 -53.51 84.15 3 A SER 56 -125.80 -169.34 4 A LYS -2 -98.60 36.25 4 A GLU -1 -169.78 -169.15 4 A LYS 0 61.84 99.49 4 A LYS 3 63.35 126.42 4 A SER 9 -53.64 -176.90 4 A LYS 23 -163.19 -138.93 4 A GLN 24 -147.90 -46.50 4 A ILE 40 -107.05 -163.26 4 A VAL 45 -36.25 -33.89 4 A ARG 53 -178.14 36.37 4 A MET 54 -61.87 69.10 5 A LYS -2 63.50 -78.97 5 A LYS 0 -108.95 59.82 5 A SER 7 61.83 161.83 5 A SER 9 -54.21 -176.74 5 A LYS 23 -164.48 -150.35 5 A GLN 24 -141.68 -46.48 5 A ILE 40 -112.57 -167.92 5 A VAL 45 -36.62 -33.03 5 A ARG 53 -178.18 32.73 5 A MET 54 -51.23 89.17 5 A SER 56 -141.53 -71.19 6 A LYS 0 -97.92 38.67 6 A LYS 3 -66.11 -76.97 6 A SER 7 -166.66 96.62 6 A SER 9 -60.45 -174.77 6 A LYS 23 -164.23 -144.59 6 A GLN 24 -145.45 -48.47 6 A ILE 40 -110.08 -163.77 6 A VAL 45 -35.94 -33.69 6 A MET 54 -54.84 84.79 7 A LYS 0 63.22 135.33 7 A LYS 3 -169.25 -45.37 7 A SER 6 61.36 93.75 7 A SER 7 58.67 -175.23 7 A SER 9 -54.68 -177.02 7 A LYS 23 -168.89 -144.75 7 A GLN 24 -144.58 -50.25 7 A ILE 40 -113.10 -161.91 7 A VAL 45 -36.20 -33.16 7 A ARG 53 -170.38 32.27 7 A MET 54 -51.64 85.77 8 A GLU -1 58.96 -171.30 8 A SER 1 -177.38 -57.14 8 A LYS 3 -167.36 78.82 8 A SER 9 -54.72 -175.48 8 A LYS 23 -166.27 -139.58 8 A GLN 24 -148.27 -46.88 8 A ILE 40 -110.40 -165.43 8 A VAL 45 -35.89 -33.39 8 A MET 54 -57.21 83.10 9 A LYS -2 -139.07 -45.59 9 A GLU -1 44.67 -91.09 9 A SER 1 -178.37 -61.90 9 A PRO 2 -57.45 178.25 9 A LYS 3 63.19 94.69 9 A SER 9 -52.17 -175.23 9 A LYS 23 -162.37 -143.10 9 A GLN 24 -147.07 -44.82 9 A ILE 40 -109.55 -165.36 9 A VAL 45 -36.53 -33.23 9 A ARG 53 -176.27 30.63 9 A MET 54 -51.32 88.12 10 A LYS 5 61.91 -163.78 10 A SER 6 70.67 -79.76 10 A SER 7 48.83 91.57 10 A SER 9 -53.14 -175.70 10 A LYS 23 -160.64 -155.30 10 A GLN 24 -139.72 -47.99 10 A ILE 40 -110.27 -164.77 10 A VAL 45 -35.73 -35.03 10 A ARG 53 -178.15 35.43 10 A MET 54 -57.89 79.56 11 A LYS -2 -163.14 -66.06 11 A PRO 2 -60.34 -74.58 11 A SER 9 -50.95 -176.61 11 A LYS 23 -161.48 -145.61 11 A GLN 24 -141.12 -50.54 11 A ILE 40 -109.14 -163.37 11 A MET 54 -49.49 89.00 12 A GLU -1 -150.21 59.35 12 A PRO 2 -68.56 -169.51 12 A LYS 5 63.03 -80.25 12 A SER 6 62.01 -179.71 12 A SER 9 -54.14 -175.78 12 A LYS 23 -158.62 -145.50 12 A GLN 24 -141.72 -50.60 12 A ILE 40 -115.48 -164.22 12 A ARG 53 -174.35 34.49 12 A MET 54 -55.81 85.08 12 A SER 56 -137.13 -50.89 13 A GLU -1 53.36 88.34 13 A LYS 3 -90.59 -74.22 13 A LYS 5 62.16 63.85 13 A SER 9 -63.09 -174.98 13 A LYS 23 -169.07 -156.78 13 A GLN 24 -134.56 -51.01 13 A ILE 40 -106.50 -161.96 13 A VAL 45 -35.90 -34.09 13 A MET 54 -48.39 91.17 13 A SER 56 38.54 55.03 14 A GLU -1 59.10 109.47 14 A SER 6 70.26 -63.40 14 A SER 7 71.95 -65.03 14 A SER 9 -56.35 -176.93 14 A LYS 23 -167.80 -143.95 14 A GLN 24 -145.82 -48.75 14 A ILE 40 -106.61 -167.52 14 A VAL 45 -36.70 -34.75 14 A ARG 53 -178.90 29.67 14 A MET 54 -52.29 84.52 15 A LYS -2 60.05 -174.40 15 A SER 9 -54.01 -176.51 15 A LYS 23 -164.44 -147.91 15 A GLN 24 -146.34 -48.53 15 A ILE 40 -112.01 -164.04 15 A VAL 45 -36.23 -36.40 15 A ARG 53 -178.34 33.04 15 A MET 54 -58.71 76.61 15 A SER 56 -130.32 -55.44 16 A LYS 3 67.37 -70.37 16 A LYS 5 -159.97 -49.70 16 A SER 6 60.87 111.61 16 A SER 9 -54.99 -175.58 16 A LYS 23 -164.22 -160.35 16 A GLN 24 -141.99 -46.63 16 A ILE 40 -105.77 -163.39 16 A VAL 45 -35.82 -32.96 16 A ARG 53 -164.93 37.20 16 A MET 54 -62.25 73.96 17 A GLU -1 -175.80 -69.12 17 A SER 1 60.37 63.66 17 A LYS 5 60.82 84.95 17 A SER 6 58.53 -82.98 17 A SER 7 171.14 -70.91 17 A SER 9 -53.92 -175.67 17 A LYS 23 -167.15 -145.18 17 A GLN 24 -140.68 -50.25 17 A ILE 40 -109.80 -163.89 17 A VAL 45 -36.69 -32.75 17 A ARG 53 -145.04 44.03 17 A MET 54 -62.49 68.92 17 A SER 56 36.40 -89.34 18 A GLU -1 -158.92 -72.05 18 A LYS 0 60.65 104.49 18 A SER 1 -178.88 -61.24 18 A PRO 2 -67.71 -165.69 18 A LYS 3 68.53 90.45 18 A SER 9 -53.42 -176.48 18 A LYS 23 -160.01 -164.76 18 A SER 25 -102.89 74.33 18 A ILE 40 -110.80 -163.13 18 A ARG 53 -98.75 32.49 18 A MET 54 -51.87 86.57 19 A LYS -2 58.27 84.07 19 A GLU -1 -131.47 -60.78 19 A SER 1 68.93 153.31 19 A LYS 5 60.84 73.74 19 A SER 9 -55.65 -174.08 19 A LYS 23 -165.05 -149.30 19 A GLN 24 -144.25 -49.07 19 A ILE 40 -114.02 -163.65 19 A VAL 45 -36.35 -31.31 19 A MET 54 -55.84 85.28 19 A SER 56 -54.08 105.07 20 A GLU -1 43.21 94.10 20 A LYS 3 64.75 79.73 20 A LYS 5 -167.41 68.30 20 A SER 7 61.94 115.33 20 A SER 9 -52.86 -175.46 20 A LYS 23 -153.15 -155.36 20 A GLN 24 -140.31 -48.01 20 A ILE 40 -109.26 -162.30 20 A VAL 45 -36.12 -33.22 20 A MET 54 -55.01 85.17 SOLUTION STRUCTURE OF THE MATA1 HOMEODOMAIN 1 N N A PRO 10 A PRO 14 HELX_P A LYS 23 A LYS 27 1 1 14 A ASN 27 A ASN 31 HELX_P A GLY 39 A GLY 43 1 2 13 A LEU 43 A LEU 47 HELX_P A LYS 52 A LYS 56 1 3 10 TRANSCRIPTION Homeodomain, helix-turn-helix, TRANSCRIPTION MATA1_YEAST UNP 1 66 P01366 KKEKSPKGKSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 66 126 1F43 -3 57 P01366 A 1 1 61 1 P 1