0.022331
0.012893
0.000000
0.000000
0.025786
0.000000
0.000000
0.000000
0.002528
0.00000
0.00000
0.00000
Wilce, J.A.
Vivian, J.P.
Hastings, A.F.
Otting, G.
Folmer, R.H.A.
Duggin, I.G.
Wake, R.G.
Wilce, M.C.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
44.780
44.780
395.580
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
doub
N
473
N
sing
Y
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
8
206
210
10.1038/84934
11224562
Structure of the RTP-DNA complex and the mechanism of polar replication fork arrest
2001
10.2210/pdb1f4k/pdb
pdb_00001f4k
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-12-16
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
14-BM-C
APS
1.00
SYNCHROTRON
APS BEAMLINE 14-BM-C
PSEUDOSYMMETRIC B-SITE OF THE TERI SEQUENCE OF B. SUBTILIS
6445.209
5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*AP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3'
1
syn
polymer
PSEUDOSYMMETRIC B-SITE OF THE TERI SEQUENCE OF B. SUBTILIS
6436.195
5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*TP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3'
1
syn
polymer
14531.099
REPLICATION TERMINATION PROTEIN
C110S
2
man
polymer
18.015
water
96
nat
water
REPLICATION TERMINATOR PROTEIN
no
no
(DC)(DT)(DA)(DT)(DG)(DA)(DA)(DC)(DA)(DT)(DA)(DA)(DT)(DG)(DT)(DT)(DC)(DA)(DT)(DA)
(DG)
CTATGAACATAATGTTCATAG
D
polydeoxyribonucleotide
no
no
(DC)(DT)(DA)(DT)(DG)(DA)(DA)(DC)(DA)(DT)(DT)(DA)(DT)(DG)(DT)(DT)(DC)(DA)(DT)(DA)
(DG)
CTATGAACATTATGTTCATAG
E
polydeoxyribonucleotide
no
no
MKEEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGA
KLQEVVLYQFKDYEAAKLYKKQLKVELDRSKKLIEKALSDNF
MKEEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGA
KLQEVVLYQFKDYEAAKLYKKQLKVELDRSKKLIEKALSDNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
Escherichia
sample
1423
Bacillus subtilis
562
Escherichia coli
PLASMID
PET-3
1
2.94
57.91
VAPOR DIFFUSION, HANGING DROP
4.6
5% PEG 4000, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP at 298K
298
sodium acetate
1
PEG 4000
1
PEG 4000
2
-2.065
1
19
D
1
E
21
3.314
D_DC1:DG21_E
1
-19.296
0.189
0.002
-0.217
-7.093
1
20
D
2
E
20
3.612
D_DT2:DA20_E
2
-5.109
0.131
-0.041
-0.263
-0.581
1
20
D
3
E
19
5.357
D_DA3:DT19_E
3
-6.453
0.108
-0.014
0.030
1.919
1
20
D
4
E
18
5.138
D_DT4:DA18_E
4
-6.015
0.133
0.119
0.088
4.706
1
19
D
5
E
17
4.361
D_DG5:DC17_E
5
-8.583
-0.070
0.063
0.083
-6.003
1
20
D
6
E
16
7.760
D_DA6:DT16_E
6
-11.624
-0.065
-0.005
-0.110
3.066
1
20
D
7
E
15
7.179
D_DA7:DT15_E
7
-17.251
0.077
0.101
-0.134
1.026
1
19
D
8
E
14
8.371
D_DC8:DG14_E
8
-5.036
0.464
-0.067
0.131
-4.976
1
20
D
9
E
13
3.519
D_DA9:DT13_E
9
-15.197
0.321
0.352
0.016
6.672
1
20
D
10
E
12
5.515
D_DT10:DA12_E
10
-16.103
0.731
0.051
0.059
-5.043
1
20
D
11
E
11
10.734
D_DA11:DT11_E
11
-24.510
0.818
0.381
-0.253
-3.696
1
20
D
12
E
10
5.580
D_DA12:DT10_E
12
-12.660
0.130
0.150
-0.022
-8.363
1
20
D
13
E
9
2.575
D_DT13:DA9_E
13
-12.630
0.642
0.391
-0.159
-3.714
1
19
D
14
E
8
2.689
D_DG14:DC8_E
14
-8.312
-0.404
0.222
-0.092
-1.702
1
20
D
15
E
7
4.322
D_DT15:DA7_E
15
-12.783
-0.167
0.005
-0.294
-1.722
1
20
D
16
E
6
3.555
D_DT16:DA6_E
16
-10.419
-0.067
0.320
0.007
-1.758
1
19
D
17
E
5
-3.930
D_DC17:DG5_E
17
-10.233
0.269
0.029
-0.206
-7.702
1
20
D
18
E
4
5.658
D_DA18:DT4_E
18
-6.531
0.465
0.245
0.081
-1.868
1
20
D
19
E
3
4.430
D_DT19:DA3_E
19
-5.760
0.532
0.338
0.145
12.463
1
20
D
20
E
2
7.370
D_DA20:DT2_E
20
-14.655
-0.301
-0.030
-0.133
12.994
1
19
D
21
E
1
4.480
D_DG21:DC1_E
21
-12.729
0.145
0.123
-0.180
3.256
33.510
D
D
1
2
10.550
E
E
21
20
3.662
6.015
-0.500
-1.093
DD_DC1DT2:DA20DG21_EE
1
6.422
-11.263
32.366
-2.962
2.006
2.830
30.105
D
D
2
3
15.231
E
E
20
19
3.015
7.820
0.322
-0.392
DD_DT2DA3:DT19DA20_EE
2
1.832
-3.568
29.038
-2.209
-0.280
3.293
31.870
D
D
3
4
3.487
E
E
19
18
3.340
1.914
-0.023
-0.678
DD_DA3DT4:DA18DT19_EE
3
0.540
-0.984
31.810
-1.589
0.141
2.895
28.133
D
D
4
5
12.166
E
E
18
17
3.083
5.871
0.773
-0.706
DD_DT4DG5:DC17DA18_EE
4
0.856
-1.774
27.513
-2.724
-1.405
3.488
39.046
D
D
5
6
-7.748
E
E
17
16
3.485
-5.164
-0.149
-0.248
DD_DG5DA6:DT16DC17_EE
5
0.293
-0.439
38.716
0.295
0.260
3.166
37.860
D
D
6
7
-9.353
E
E
16
15
3.129
-6.042
0.075
-0.482
DD_DA6DA7:DT15DT16_EE
6
1.686
-2.610
37.356
0.009
0.094
3.325
35.223
D
D
7
8
-0.077
E
E
15
14
3.321
-0.047
0.610
-0.498
DD_DA7DC8:DG14DT15_EE
7
0.207
-0.342
35.222
-0.816
-0.976
3.424
40.862
D
D
8
9
0.997
E
E
14
13
3.427
0.696
-0.048
-0.178
DD_DC8DA9:DT13DG14_EE
8
-0.409
0.586
40.855
-0.335
0.021
3.015
31.436
D
D
9
10
-5.091
E
E
13
12
3.017
-2.748
-0.081
-0.504
DD_DA9DT10:DA12DT13_EE
9
4.049
-7.502
31.062
-0.453
0.852
3.502
37.377
D
D
10
11
-2.346
E
E
12
11
3.520
-1.503
0.085
0.364
DD_DT10DA11:DT11DA12_EE
10
-0.500
0.781
37.344
0.780
-0.203
3.073
37.530
D
D
11
12
-1.976
E
E
11
10
3.072
-1.271
-0.213
-0.340
DD_DA11DA12:DT10DT11_EE
11
1.191
-1.851
37.491
-0.373
0.478
3.575
30.134
D
D
12
13
-5.620
E
E
10
9
3.536
-2.917
0.209
-0.683
DD_DA12DT13:DA9DT10_EE
12
-1.115
2.149
29.976
-0.665
-0.649
2.995
33.872
D
D
13
14
3.232
E
E
9
8
3.019
1.882
0.106
-0.407
DD_DT13DG14:DC8DA9_EE
13
0.995
-1.708
33.807
-0.978
-0.035
3.218
35.902
D
D
14
15
-1.730
E
E
8
7
3.251
-1.065
-0.435
-0.405
DD_DG14DT15:DA7DC8_EE
14
2.871
-4.664
35.775
-0.506
1.113
3.353
35.888
D
D
15
16
-9.452
E
E
7
6
3.329
-5.797
0.408
-0.591
DD_DT15DT16:DA6DA7_EE
15
-2.075
3.384
35.373
-0.106
-0.968
3.378
43.590
D
D
16
17
-7.983
E
E
6
5
3.341
-5.905
0.122
-0.515
DD_DT16DC17:DG5DA6_EE
16
3.602
-4.869
43.064
-0.106
0.194
3.191
30.831
D
D
17
18
9.959
E
E
5
4
3.330
5.270
-0.489
-0.593
DD_DC17DA18:DT4DG5_EE
17
-0.478
0.904
30.384
-2.147
0.826
3.224
28.756
D
D
18
19
0.056
E
E
4
3
3.225
0.028
0.037
-0.751
DD_DA18DT19:DA3DT4_EE
18
-0.294
0.592
28.755
-1.518
-0.140
2.944
38.399
D
D
19
20
0.966
E
E
3
2
2.944
0.632
0.081
1.584
DD_DT19DA20:DT2DA3_EE
19
6.420
-9.804
37.873
2.338
0.603
3.129
30.603
D
D
20
21
33.569
E
E
2
1
3.337
16.745
0.362
0.699
DD_DA20DG21:DC1DT2_EE
20
-3.263
6.541
25.501
-2.265
-1.385
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Data collection
1
0
2001-06-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-03
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
1BM9 is the uncomplexed form of the protein
RCSB
Y
RCSB
2000-06-08
REL
REL
HOH
water
HOH
1
4
HOH
HOH
22
D
HOH
3
4
HOH
HOH
23
D
HOH
5
4
HOH
HOH
24
D
HOH
12
4
HOH
HOH
25
D
HOH
24
4
HOH
HOH
26
D
HOH
25
4
HOH
HOH
27
D
HOH
28
4
HOH
HOH
28
D
HOH
31
4
HOH
HOH
29
D
HOH
45
4
HOH
HOH
30
D
HOH
49
4
HOH
HOH
31
D
HOH
57
4
HOH
HOH
32
D
HOH
66
4
HOH
HOH
33
D
HOH
69
4
HOH
HOH
34
D
HOH
71
4
HOH
HOH
35
D
HOH
73
4
HOH
HOH
36
D
HOH
76
4
HOH
HOH
37
D
HOH
80
4
HOH
HOH
38
D
HOH
81
4
HOH
HOH
39
D
HOH
89
4
HOH
HOH
40
D
HOH
91
4
HOH
HOH
41
D
HOH
92
4
HOH
HOH
42
D
HOH
2
4
HOH
HOH
22
E
HOH
6
4
HOH
HOH
23
E
HOH
14
4
HOH
HOH
24
E
HOH
15
4
HOH
HOH
25
E
HOH
20
4
HOH
HOH
26
E
HOH
30
4
HOH
HOH
27
E
HOH
33
4
HOH
HOH
28
E
HOH
36
4
HOH
HOH
29
E
HOH
38
4
HOH
HOH
30
E
HOH
41
4
HOH
HOH
31
E
HOH
50
4
HOH
HOH
32
E
HOH
61
4
HOH
HOH
33
E
HOH
64
4
HOH
HOH
34
E
HOH
67
4
HOH
HOH
35
E
HOH
77
4
HOH
HOH
36
E
HOH
78
4
HOH
HOH
37
E
HOH
87
4
HOH
HOH
38
E
HOH
88
4
HOH
HOH
39
E
HOH
90
4
HOH
HOH
40
E
HOH
95
4
HOH
HOH
41
E
HOH
8
4
HOH
HOH
123
A
HOH
10
4
HOH
HOH
124
A
HOH
11
4
HOH
HOH
125
A
HOH
13
4
HOH
HOH
126
A
HOH
16
4
HOH
HOH
127
A
HOH
17
4
HOH
HOH
128
A
HOH
19
4
HOH
HOH
129
A
HOH
22
4
HOH
HOH
130
A
HOH
23
4
HOH
HOH
131
A
HOH
27
4
HOH
HOH
132
A
HOH
29
4
HOH
HOH
133
A
HOH
32
4
HOH
HOH
134
A
HOH
34
4
HOH
HOH
135
A
HOH
37
4
HOH
HOH
136
A
HOH
39
4
HOH
HOH
137
A
HOH
40
4
HOH
HOH
138
A
HOH
44
4
HOH
HOH
139
A
HOH
47
4
HOH
HOH
140
A
HOH
55
4
HOH
HOH
141
A
HOH
56
4
HOH
HOH
142
A
HOH
59
4
HOH
HOH
143
A
HOH
70
4
HOH
HOH
144
A
HOH
72
4
HOH
HOH
145
A
HOH
74
4
HOH
HOH
146
A
HOH
75
4
HOH
HOH
147
A
HOH
82
4
HOH
HOH
148
A
HOH
84
4
HOH
HOH
149
A
HOH
86
4
HOH
HOH
150
A
HOH
94
4
HOH
HOH
151
A
HOH
4
4
HOH
HOH
123
B
HOH
7
4
HOH
HOH
124
B
HOH
9
4
HOH
HOH
125
B
HOH
18
4
HOH
HOH
126
B
HOH
21
4
HOH
HOH
127
B
HOH
26
4
HOH
HOH
128
B
HOH
35
4
HOH
HOH
129
B
HOH
42
4
HOH
HOH
130
B
HOH
43
4
HOH
HOH
131
B
HOH
46
4
HOH
HOH
132
B
HOH
48
4
HOH
HOH
133
B
HOH
51
4
HOH
HOH
134
B
HOH
52
4
HOH
HOH
135
B
HOH
53
4
HOH
HOH
136
B
HOH
54
4
HOH
HOH
137
B
HOH
58
4
HOH
HOH
138
B
HOH
60
4
HOH
HOH
139
B
HOH
62
4
HOH
HOH
140
B
HOH
63
4
HOH
HOH
141
B
HOH
65
4
HOH
HOH
142
B
HOH
68
4
HOH
HOH
143
B
HOH
79
4
HOH
HOH
144
B
HOH
83
4
HOH
HOH
145
B
HOH
85
4
HOH
HOH
146
B
HOH
93
4
HOH
HOH
147
B
HOH
96
4
HOH
HOH
148
B
C
1
n
1
DC
1
D
T
2
n
2
DT
2
D
A
3
n
3
DA
3
D
T
4
n
4
DT
4
D
G
5
n
5
DG
5
D
A
6
n
6
DA
6
D
A
7
n
7
DA
7
D
C
8
n
8
DC
8
D
A
9
n
9
DA
9
D
T
10
n
10
DT
10
D
A
11
n
11
DA
11
D
A
12
n
12
DA
12
D
T
13
n
13
DT
13
D
G
14
n
14
DG
14
D
T
15
n
15
DT
15
D
T
16
n
16
DT
16
D
C
17
n
17
DC
17
D
A
18
n
18
DA
18
D
T
19
n
19
DT
19
D
A
20
n
20
DA
20
D
G
21
n
21
DG
21
D
C
1
n
1
DC
1
E
T
2
n
2
DT
2
E
A
3
n
3
DA
3
E
T
4
n
4
DT
4
E
G
5
n
5
DG
5
E
A
6
n
6
DA
6
E
A
7
n
7
DA
7
E
C
8
n
8
DC
8
E
A
9
n
9
DA
9
E
T
10
n
10
DT
10
E
T
11
n
11
DT
11
E
A
12
n
12
DA
12
E
T
13
n
13
DT
13
E
G
14
n
14
DG
14
E
T
15
n
15
DT
15
E
T
16
n
16
DT
16
E
C
17
n
17
DC
17
E
A
18
n
18
DA
18
E
T
19
n
19
DT
19
E
A
20
n
20
DA
20
E
G
21
n
21
DG
21
E
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
SER
8
n
8
SER
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
PHE
11
n
11
PHE
11
A
LEU
12
n
12
LEU
12
A
VAL
13
n
13
VAL
13
A
LYS
14
n
14
LYS
14
A
GLN
15
n
15
GLN
15
A
ARG
16
n
16
ARG
16
A
ALA
17
n
17
ALA
17
A
PHE
18
n
18
PHE
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
TYR
22
n
22
TYR
22
A
MET
23
n
23
MET
23
A
ILE
24
n
24
ILE
24
A
THR
25
n
25
THR
25
A
MET
26
n
26
MET
26
A
THR
27
n
27
THR
27
A
GLU
28
n
28
GLU
28
A
GLN
29
n
29
GLN
29
A
GLU
30
n
30
GLU
30
A
ARG
31
n
31
ARG
31
A
LEU
32
n
32
LEU
32
A
TYR
33
n
33
TYR
33
A
GLY
34
n
34
GLY
34
A
LEU
35
n
35
LEU
35
A
LYS
36
n
36
LYS
36
A
LEU
37
n
37
LEU
37
A
LEU
38
n
38
LEU
38
A
GLU
39
n
39
GLU
39
A
VAL
40
n
40
VAL
40
A
LEU
41
n
41
LEU
41
A
ARG
42
n
42
ARG
42
A
SER
43
n
43
SER
43
A
GLU
44
n
44
GLU
44
A
PHE
45
n
45
PHE
45
A
LYS
46
n
46
LYS
46
A
GLU
47
n
47
GLU
47
A
ILE
48
n
48
ILE
48
A
GLY
49
n
49
GLY
49
A
PHE
50
n
50
PHE
50
A
LYS
51
n
51
LYS
51
A
PRO
52
n
52
PRO
52
A
ASN
53
n
53
ASN
53
A
HIS
54
n
54
HIS
54
A
THR
55
n
55
THR
55
A
GLU
56
n
56
GLU
56
A
VAL
57
n
57
VAL
57
A
TYR
58
n
58
TYR
58
A
ARG
59
n
59
ARG
59
A
SER
60
n
60
SER
60
A
LEU
61
n
61
LEU
61
A
HIS
62
n
62
HIS
62
A
GLU
63
n
63
GLU
63
A
LEU
64
n
64
LEU
64
A
LEU
65
n
65
LEU
65
A
ASP
66
n
66
ASP
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
ILE
69
n
69
ILE
69
A
LEU
70
n
70
LEU
70
A
LYS
71
n
71
LYS
71
A
GLN
72
n
72
GLN
72
A
ILE
73
n
73
ILE
73
A
LYS
74
n
74
LYS
74
A
VAL
75
n
75
VAL
75
A
LYS
76
n
76
LYS
76
A
LYS
77
n
77
LYS
77
A
GLU
78
n
78
GLU
78
A
GLY
79
n
79
GLY
79
A
ALA
80
n
80
ALA
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
GLN
83
n
83
GLN
83
A
GLU
84
n
84
GLU
84
A
VAL
85
n
85
VAL
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
TYR
88
n
88
TYR
88
A
GLN
89
n
89
GLN
89
A
PHE
90
n
90
PHE
90
A
LYS
91
n
91
LYS
91
A
ASP
92
n
92
ASP
92
A
TYR
93
n
93
TYR
93
A
GLU
94
n
94
GLU
94
A
ALA
95
n
95
ALA
95
A
ALA
96
n
96
ALA
96
A
LYS
97
n
97
LYS
97
A
LEU
98
n
98
LEU
98
A
TYR
99
n
99
TYR
99
A
LYS
100
n
100
LYS
100
A
LYS
101
n
101
LYS
101
A
GLN
102
n
102
GLN
102
A
LEU
103
n
103
LEU
103
A
LYS
104
n
104
LYS
104
A
VAL
105
n
105
VAL
105
A
GLU
106
n
106
GLU
106
A
LEU
107
n
107
LEU
107
A
ASP
108
n
108
ASP
108
A
ARG
109
n
109
ARG
109
A
SER
110
n
110
SER
110
A
LYS
111
n
111
LYS
111
A
LYS
112
n
112
LYS
112
A
LEU
113
n
113
LEU
113
A
ILE
114
n
114
ILE
114
A
GLU
115
n
115
GLU
115
A
LYS
116
n
116
LYS
116
A
ALA
117
n
117
ALA
117
A
LEU
118
n
118
LEU
118
A
SER
119
n
119
SER
119
A
ASP
120
n
120
ASP
120
A
ASN
121
n
121
ASN
121
A
PHE
122
n
122
PHE
122
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
SER
8
n
8
SER
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
PHE
11
n
11
PHE
11
B
LEU
12
n
12
LEU
12
B
VAL
13
n
13
VAL
13
B
LYS
14
n
14
LYS
14
B
GLN
15
n
15
GLN
15
B
ARG
16
n
16
ARG
16
B
ALA
17
n
17
ALA
17
B
PHE
18
n
18
PHE
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
LEU
21
n
21
LEU
21
B
TYR
22
n
22
TYR
22
B
MET
23
n
23
MET
23
B
ILE
24
n
24
ILE
24
B
THR
25
n
25
THR
25
B
MET
26
n
26
MET
26
B
THR
27
n
27
THR
27
B
GLU
28
n
28
GLU
28
B
GLN
29
n
29
GLN
29
B
GLU
30
n
30
GLU
30
B
ARG
31
n
31
ARG
31
B
LEU
32
n
32
LEU
32
B
TYR
33
n
33
TYR
33
B
GLY
34
n
34
GLY
34
B
LEU
35
n
35
LEU
35
B
LYS
36
n
36
LYS
36
B
LEU
37
n
37
LEU
37
B
LEU
38
n
38
LEU
38
B
GLU
39
n
39
GLU
39
B
VAL
40
n
40
VAL
40
B
LEU
41
n
41
LEU
41
B
ARG
42
n
42
ARG
42
B
SER
43
n
43
SER
43
B
GLU
44
n
44
GLU
44
B
PHE
45
n
45
PHE
45
B
LYS
46
n
46
LYS
46
B
GLU
47
n
47
GLU
47
B
ILE
48
n
48
ILE
48
B
GLY
49
n
49
GLY
49
B
PHE
50
n
50
PHE
50
B
LYS
51
n
51
LYS
51
B
PRO
52
n
52
PRO
52
B
ASN
53
n
53
ASN
53
B
HIS
54
n
54
HIS
54
B
THR
55
n
55
THR
55
B
GLU
56
n
56
GLU
56
B
VAL
57
n
57
VAL
57
B
TYR
58
n
58
TYR
58
B
ARG
59
n
59
ARG
59
B
SER
60
n
60
SER
60
B
LEU
61
n
61
LEU
61
B
HIS
62
n
62
HIS
62
B
GLU
63
n
63
GLU
63
B
LEU
64
n
64
LEU
64
B
LEU
65
n
65
LEU
65
B
ASP
66
n
66
ASP
66
B
ASP
67
n
67
ASP
67
B
GLY
68
n
68
GLY
68
B
ILE
69
n
69
ILE
69
B
LEU
70
n
70
LEU
70
B
LYS
71
n
71
LYS
71
B
GLN
72
n
72
GLN
72
B
ILE
73
n
73
ILE
73
B
LYS
74
n
74
LYS
74
B
VAL
75
n
75
VAL
75
B
LYS
76
n
76
LYS
76
B
LYS
77
n
77
LYS
77
B
GLU
78
n
78
GLU
78
B
GLY
79
n
79
GLY
79
B
ALA
80
n
80
ALA
80
B
LYS
81
n
81
LYS
81
B
LEU
82
n
82
LEU
82
B
GLN
83
n
83
GLN
83
B
GLU
84
n
84
GLU
84
B
VAL
85
n
85
VAL
85
B
VAL
86
n
86
VAL
86
B
LEU
87
n
87
LEU
87
B
TYR
88
n
88
TYR
88
B
GLN
89
n
89
GLN
89
B
PHE
90
n
90
PHE
90
B
LYS
91
n
91
LYS
91
B
ASP
92
n
92
ASP
92
B
TYR
93
n
93
TYR
93
B
GLU
94
n
94
GLU
94
B
ALA
95
n
95
ALA
95
B
ALA
96
n
96
ALA
96
B
LYS
97
n
97
LYS
97
B
LEU
98
n
98
LEU
98
B
TYR
99
n
99
TYR
99
B
LYS
100
n
100
LYS
100
B
LYS
101
n
101
LYS
101
B
GLN
102
n
102
GLN
102
B
LEU
103
n
103
LEU
103
B
LYS
104
n
104
LYS
104
B
VAL
105
n
105
VAL
105
B
GLU
106
n
106
GLU
106
B
LEU
107
n
107
LEU
107
B
ASP
108
n
108
ASP
108
B
ARG
109
n
109
ARG
109
B
SER
110
n
110
SER
110
B
LYS
111
n
111
LYS
111
B
LYS
112
n
112
LYS
112
B
LEU
113
n
113
LEU
113
B
ILE
114
n
114
ILE
114
B
GLU
115
n
115
GLU
115
B
LYS
116
n
116
LYS
116
B
ALA
117
n
117
ALA
117
B
LEU
118
n
118
LEU
118
B
SER
119
n
119
SER
119
B
ASP
120
n
120
ASP
120
B
ASN
121
n
121
ASN
121
B
PHE
122
n
122
PHE
122
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
75
C
N
VAL
75
A
O
VAL
85
C
O
VAL
85
B
O
ILE
73
D
O
ILE
73
B
N
LEU
87
D
N
LEU
87
1
A
MET
1
C
MET
1
1
Y
1
A
LYS
2
C
LYS
2
1
Y
1
A
GLU
3
C
GLU
3
1
Y
1
A
GLU
4
C
GLU
4
1
Y
1
A
LYS
5
C
LYS
5
1
Y
1
A
ARG
6
C
ARG
6
1
Y
1
A
SER
7
C
SER
7
1
Y
1
B
MET
1
D
MET
1
1
Y
1
B
LYS
2
D
LYS
2
1
Y
1
B
GLU
3
D
GLU
3
1
Y
1
B
GLU
4
D
GLU
4
1
Y
1
B
LYS
5
D
LYS
5
1
Y
1
B
ARG
6
D
ARG
6
1
Y
1
B
SER
7
D
SER
7
1
Y
1
D
DT
2
0.072
SIDE CHAIN
1
D
DA
6
0.051
SIDE CHAIN
1
D
DA
7
0.052
SIDE CHAIN
1
D
DA
9
0.055
SIDE CHAIN
1
D
DT
10
0.058
SIDE CHAIN
1
D
DG
14
0.048
SIDE CHAIN
1
D
DT
16
0.059
SIDE CHAIN
1
D
DA
18
0.076
SIDE CHAIN
1
D
DA
20
0.080
SIDE CHAIN
1
E
DG
5
0.086
SIDE CHAIN
1
9.56
1.40
114.30
123.86
D
D
D
N9
C1'
C2'
DA
DA
DA
3
3
3
N
1
2.36
0.30
108.30
110.66
D
D
D
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
3.88
0.50
106.80
110.68
D
D
D
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
1
10.77
1.40
114.30
125.07
D
D
D
N9
C1'
C2'
DG
DG
DG
5
5
5
N
1
4.21
0.30
108.30
112.51
D
D
D
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
8.68
1.40
114.30
122.98
D
D
D
N1
C1'
C2'
DC
DC
DC
8
8
8
N
1
2.22
0.30
108.30
110.52
D
D
D
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
9.38
1.40
114.30
123.68
D
D
D
N1
C1'
C2'
DT
DT
DT
10
10
10
N
1
1.87
0.30
108.30
110.17
D
D
D
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
2.03
0.30
108.30
110.33
D
D
D
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
8.59
1.40
114.30
122.89
D
D
D
N1
C1'
C2'
DC
DC
DC
17
17
17
N
1
8.91
1.40
114.30
123.21
D
D
D
N1
C1'
C2'
DT
DT
DT
19
19
19
N
1
2.44
0.30
108.30
110.74
D
D
D
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
9.30
1.40
114.30
123.60
D
D
D
N9
C1'
C2'
DA
DA
DA
20
20
20
N
1
2.30
0.30
108.30
110.60
D
D
D
O4'
C1'
N9
DG
DG
DG
21
21
21
N
1
-5.45
0.80
102.40
96.95
E
E
E
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
1
9.72
1.40
114.30
124.02
E
E
E
N9
C1'
C2'
DG
DG
DG
5
5
5
N
1
5.13
0.30
108.30
113.43
E
E
E
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
8.72
1.40
114.30
123.02
E
E
E
N1
C1'
C2'
DT
DT
DT
13
13
13
N
1
A
PHE
11
-89.59
-146.78
1
A
LYS
81
-159.69
84.64
1
A
ASP
92
-153.71
87.49
1
B
PHE
11
-87.70
-146.06
1
B
ASP
92
-153.27
89.67
-7.784
-6.708
0.000
-7.784
0.000
15.569
0.2759
0.2279
0.271
0.271
2.5
50
1509
15166
15166
10
87.9
random
1
THROUGHOUT
0.0
0.0
protein_rep.param, dna-rna_rep.param, water_rep.param
2.5
50
96
2873
0
855
1922
0.009658
1.72021
60.5
2.5
50
1F4K
15166
-3
0.073
1
13.7
9.7
87.9
0.175
2.50
2.58
5.8
54.2
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
CRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEX
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
The whole biological assembly is contained in the asymmetric unit. It comprises a homodimer constructed from chain A and B bound to double stranded DNA (chains D and E).
A
LYS
14
C
LYS
14
HELX_P
A
GLU
30
C
GLU
30
1
1
17
A
TYR
33
C
TYR
33
HELX_P
A
LYS
46
C
LYS
46
1
2
14
A
ASN
53
C
ASN
53
HELX_P
A
ASP
67
C
ASP
67
1
3
15
A
ASP
92
C
ASP
92
HELX_P
A
PHE
122
C
PHE
122
1
4
31
B
LYS
14
D
LYS
14
HELX_P
B
GLU
30
D
GLU
30
1
5
17
B
TYR
33
D
TYR
33
HELX_P
B
LYS
46
D
LYS
46
1
6
14
B
ASN
53
D
ASN
53
HELX_P
B
ASP
67
D
ASP
67
1
7
15
B
ASP
92
D
ASP
92
HELX_P
B
PHE
122
D
PHE
122
1
8
31
hydrog
WATSON-CRICK
D
DC
1
A
N3
DC
1
1_555
E
DG
21
B
N1
DG
21
1_555
hydrog
WATSON-CRICK
D
DC
1
A
N4
DC
1
1_555
E
DG
21
B
O6
DG
21
1_555
hydrog
WATSON-CRICK
D
DC
1
A
O2
DC
1
1_555
E
DG
21
B
N2
DG
21
1_555
hydrog
WATSON-CRICK
D
DT
2
A
N3
DT
2
1_555
E
DA
20
B
N1
DA
20
1_555
hydrog
WATSON-CRICK
D
DT
2
A
O4
DT
2
1_555
E
DA
20
B
N6
DA
20
1_555
hydrog
WATSON-CRICK
D
DA
3
A
N1
DA
3
1_555
E
DT
19
B
N3
DT
19
1_555
hydrog
WATSON-CRICK
D
DA
3
A
N6
DA
3
1_555
E
DT
19
B
O4
DT
19
1_555
hydrog
WATSON-CRICK
D
DT
4
A
N3
DT
4
1_555
E
DA
18
B
N1
DA
18
1_555
hydrog
WATSON-CRICK
D
DT
4
A
O4
DT
4
1_555
E
DA
18
B
N6
DA
18
1_555
hydrog
WATSON-CRICK
D
DG
5
A
N1
DG
5
1_555
E
DC
17
B
N3
DC
17
1_555
hydrog
WATSON-CRICK
D
DG
5
A
N2
DG
5
1_555
E
DC
17
B
O2
DC
17
1_555
hydrog
WATSON-CRICK
D
DG
5
A
O6
DG
5
1_555
E
DC
17
B
N4
DC
17
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N1
DA
6
1_555
E
DT
16
B
N3
DT
16
1_555
hydrog
WATSON-CRICK
D
DA
6
A
N6
DA
6
1_555
E
DT
16
B
O4
DT
16
1_555
hydrog
WATSON-CRICK
D
DA
7
A
N1
DA
7
1_555
E
DT
15
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
D
DA
7
A
N6
DA
7
1_555
E
DT
15
B
O4
DT
15
1_555
hydrog
WATSON-CRICK
D
DC
8
A
N3
DC
8
1_555
E
DG
14
B
N1
DG
14
1_555
hydrog
WATSON-CRICK
D
DC
8
A
N4
DC
8
1_555
E
DG
14
B
O6
DG
14
1_555
hydrog
WATSON-CRICK
D
DC
8
A
O2
DC
8
1_555
E
DG
14
B
N2
DG
14
1_555
hydrog
WATSON-CRICK
D
DA
9
A
N1
DA
9
1_555
E
DT
13
B
N3
DT
13
1_555
hydrog
WATSON-CRICK
D
DA
9
A
N6
DA
9
1_555
E
DT
13
B
O4
DT
13
1_555
hydrog
WATSON-CRICK
D
DT
10
A
N3
DT
10
1_555
E
DA
12
B
N1
DA
12
1_555
hydrog
WATSON-CRICK
D
DT
10
A
O4
DT
10
1_555
E
DA
12
B
N6
DA
12
1_555
hydrog
WATSON-CRICK
D
DA
11
A
N1
DA
11
1_555
E
DT
11
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
D
DA
11
A
N6
DA
11
1_555
E
DT
11
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
D
DA
12
A
N1
DA
12
1_555
E
DT
10
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
D
DA
12
A
N6
DA
12
1_555
E
DT
10
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
D
DT
13
A
N3
DT
13
1_555
E
DA
9
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
D
DT
13
A
O4
DT
13
1_555
E
DA
9
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
D
DG
14
A
N1
DG
14
1_555
E
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
14
A
N2
DG
14
1_555
E
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
D
DG
14
A
O6
DG
14
1_555
E
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
D
DT
15
A
N3
DT
15
1_555
E
DA
7
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
15
A
O4
DT
15
1_555
E
DA
7
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
D
DT
16
A
N3
DT
16
1_555
E
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
D
DT
16
A
O4
DT
16
1_555
E
DA
6
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
D
DC
17
A
N3
DC
17
1_555
E
DG
5
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
17
A
N4
DC
17
1_555
E
DG
5
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
D
DC
17
A
O2
DC
17
1_555
E
DG
5
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
D
DA
18
A
N1
DA
18
1_555
E
DT
4
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
D
DA
18
A
N6
DA
18
1_555
E
DT
4
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
D
DT
19
A
N3
DT
19
1_555
E
DA
3
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
D
DT
19
A
O4
DT
19
1_555
E
DA
3
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
D
DA
20
A
N1
DA
20
1_555
E
DT
2
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
D
DA
20
A
N6
DA
20
1_555
E
DT
2
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
D
DG
21
A
N1
DG
21
1_555
E
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
D
DG
21
A
N2
DG
21
1_555
E
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
D
DG
21
A
O6
DG
21
1_555
E
DC
1
B
N4
DC
1
1_555
REPLICATION/DNA
winged-helix protein-DNA complex, REPLICATION AND TERMINATION, FORK ARREST MECHANISM, REPLICATION-DNA COMPLEX
RTP_BACSU
UNP
3
1
P68732
MKEEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGA
KLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF
1F4K
PDB
1
1F4K
1F4K
PDB
2
1F4K
1
122
1F4K
1
122
P68732
A
1
1
122
1
122
1F4K
1
122
P68732
B
1
1
122
1
21
1F4K
1
21
1F4K
D
2
1
21
1
21
1F4K
1
21
1F4K
E
3
1
21
1
CYS
engineered mutation
SER
110
1F4K
A
P68732
UNP
110
110
2
CYS
engineered mutation
SER
110
1F4K
B
P68732
UNP
110
110
2
2
anti-parallel
anti-parallel
A
LEU
70
C
LEU
70
A
LYS
76
C
LYS
76
A
GLU
84
C
GLU
84
A
PHE
90
C
PHE
90
B
LEU
70
D
LEU
70
B
LYS
74
D
LYS
74
B
VAL
86
D
VAL
86
B
PHE
90
D
PHE
90
154
trigonal
P 32 2 1