1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kurniawan, N.D. Atkins, A.R. Brereton, I.M. Kroon, P.A. Smith, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 9 1282 1293 10933493 NMR structure of a concatemer of the first and second ligand-binding modules of the human low-density lipoprotein receptor. 2000 US Biochemistry BICHAW 0033 0006-2960 37 1662 1670 10.1021/bi972529n Calcium is Essential for the Structural Integrity of the Cysteine-Rich, Ligand-Binding Repeat of the Low-Density Lipoprotein Receptor 1998 US Biochemistry BICHAW 0033 0006-2960 37 10994 11002 10.1021/bi980452c Folding, Calcium Binding, and Structural Characterization of a Concatemer of the First and Second Ligand-Binding Modules of the Low-Density Lipoprotein Receptor 1998 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 92 6334 6338 Three-Dimensional Structure of a Cysteine-Rich Repeat from the Low-Density Lipoprotein Receptor 1995 US Biochemistry BICHAW 0033 0006-2960 34 14474 14481 Three-Dimensional Structure of the Second Cysteine-Rich Repeat from the Human Low-Density Lipoprotein Receptor 1995 10.2210/pdb1f5y/pdb pdb_00001f5y 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 LIGAND-BINDING MODULE CONCATEMER 9258.997 LOW-DENSITY LIPOPROTEIN RECEPTOR LIGAND-BINDING MODULES 1-2 1 man polymer 40.078 CALCIUM ION 2 syn non-polymer LDL RECEPTOR no no GSAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGS DEQGC GSAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGS DEQGC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 LIVER Homo sapiens 562 Escherichia coli PGEX-2T, GST-FUSION PROTEIN database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-08-30 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NMR structure of LB2 NMR structure of LB1 X-ray structure of LB5 RCSB Y RCSB 2000-06-18 REL REL CA CALCIUM ION This structure was determined using standard 2D homonuclear techniques structures with the lowest energy 50 20 2D-TOCSY DQF-COSY 2D NOESY E-COSY 0.045 5.5 atmospheric atm 310 K NMR inputs: NOE total 889: 286 intra, 273 sequential, 184 medium, 146 long range; Others: 32 dihedral restraints, 13 h-bonds, 12 calcium coordination Torsion angle dynamics (DYANA) followed by simulated annealing and molecular dynamics (X-PLOR) for calcium coordination 2 lowest energy 1 mM LB1-2, 15 mM CaCl2, pH 5.5 95% H2O/5% D2O 1 mM LB1-2, 15 mM CaCl2, pH 5.5 99% D2O BRUKER collection XwinNMR 2 ETH-Zurich data analysis XEASY 1.4 Guntert structure solution DYANA 1.5 Brunger refinement X-PLOR 3.85 Koradi data analysis MOLMOL 2.6 750 Bruker DMX CA 86 2 CA CA 86 A CA 87 2 CA CA 87 A GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A ALA 3 n 3 ALA 3 A VAL 4 n 4 VAL 4 A GLY 5 n 5 GLY 5 A ASP 6 n 6 ASP 6 A ARG 7 n 7 ARG 7 A CYS 8 n 8 CYS 8 A GLU 9 n 9 GLU 9 A ARG 10 n 10 ARG 10 A ASN 11 n 11 ASN 11 A GLU 12 n 12 GLU 12 A PHE 13 n 13 PHE 13 A GLN 14 n 14 GLN 14 A CYS 15 n 15 CYS 15 A GLN 16 n 16 GLN 16 A ASP 17 n 17 ASP 17 A GLY 18 n 18 GLY 18 A LYS 19 n 19 LYS 19 A CYS 20 n 20 CYS 20 A ILE 21 n 21 ILE 21 A SER 22 n 22 SER 22 A TYR 23 n 23 TYR 23 A LYS 24 n 24 LYS 24 A TRP 25 n 25 TRP 25 A VAL 26 n 26 VAL 26 A CYS 27 n 27 CYS 27 A ASP 28 n 28 ASP 28 A GLY 29 n 29 GLY 29 A SER 30 n 30 SER 30 A ALA 31 n 31 ALA 31 A GLU 32 n 32 GLU 32 A CYS 33 n 33 CYS 33 A GLN 34 n 34 GLN 34 A ASP 35 n 35 ASP 35 A GLY 36 n 36 GLY 36 A SER 37 n 37 SER 37 A ASP 38 n 38 ASP 38 A GLU 39 n 39 GLU 39 A SER 40 n 40 SER 40 A GLN 41 n 41 GLN 41 A GLU 42 n 42 GLU 42 A THR 43 n 43 THR 43 A CYS 44 n 44 CYS 44 A LEU 45 n 45 LEU 45 A SER 46 n 46 SER 46 A VAL 47 n 47 VAL 47 A THR 48 n 48 THR 48 A CYS 49 n 49 CYS 49 A LYS 50 n 50 LYS 50 A SER 51 n 51 SER 51 A GLY 52 n 52 GLY 52 A ASP 53 n 53 ASP 53 A PHE 54 n 54 PHE 54 A SER 55 n 55 SER 55 A CYS 56 n 56 CYS 56 A GLY 57 n 57 GLY 57 A GLY 58 n 58 GLY 58 A ARG 59 n 59 ARG 59 A VAL 60 n 60 VAL 60 A ASN 61 n 61 ASN 61 A ARG 62 n 62 ARG 62 A CYS 63 n 63 CYS 63 A ILE 64 n 64 ILE 64 A PRO 65 n 65 PRO 65 A GLN 66 n 66 GLN 66 A PHE 67 n 67 PHE 67 A TRP 68 n 68 TRP 68 A ARG 69 n 69 ARG 69 A CYS 70 n 70 CYS 70 A ASP 71 n 71 ASP 71 A GLY 72 n 72 GLY 72 A GLN 73 n 73 GLN 73 A VAL 74 n 74 VAL 74 A ASP 75 n 75 ASP 75 A CYS 76 n 76 CYS 76 A ASP 77 n 77 ASP 77 A ASN 78 n 78 ASN 78 A GLY 79 n 79 GLY 79 A SER 80 n 80 SER 80 A ASP 81 n 81 ASP 81 A GLU 82 n 82 GLU 82 A GLN 83 n 83 GLN 83 A GLY 84 n 84 GLY 84 A CYS 85 n 85 CYS 85 A author_defined_assembly 1 monomeric A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 A CYS 27 A N CYS 27 1_555 81.9 A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 A ASP 28 A OD1 ASP 28 1_555 69.3 A CYS 27 A N CYS 27 1_555 A CA 86 B CA CA 1_555 A ASP 28 A OD1 ASP 28 1_555 103.3 A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 A SER 30 A O SER 30 1_555 116.1 A CYS 27 A N CYS 27 1_555 A CA 86 B CA CA 1_555 A SER 30 A O SER 30 1_555 146.5 A ASP 28 A OD1 ASP 28 1_555 A CA 86 B CA CA 1_555 A SER 30 A O SER 30 1_555 62.5 A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 A GLU 32 A OE1 GLU 32 1_555 59.4 A CYS 27 A N CYS 27 1_555 A CA 86 B CA CA 1_555 A GLU 32 A OE1 GLU 32 1_555 141.3 A ASP 28 A OD1 ASP 28 1_555 A CA 86 B CA CA 1_555 A GLU 32 A OE1 GLU 32 1_555 66.2 A SER 30 A O SER 30 1_555 A CA 86 B CA CA 1_555 A GLU 32 A OE1 GLU 32 1_555 64.1 A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 A ASP 38 A O ASP 38 1_555 114.0 A CYS 27 A N CYS 27 1_555 A CA 86 B CA CA 1_555 A ASP 38 A O ASP 38 1_555 58.8 A ASP 28 A OD1 ASP 28 1_555 A CA 86 B CA CA 1_555 A ASP 38 A O ASP 38 1_555 159.6 A SER 30 A O SER 30 1_555 A CA 86 B CA CA 1_555 A ASP 38 A O ASP 38 1_555 126.0 A GLU 32 A OE1 GLU 32 1_555 A CA 86 B CA CA 1_555 A ASP 38 A O ASP 38 1_555 133.6 A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 A ASP 38 A OD1 ASP 38 1_555 103.3 A CYS 27 A N CYS 27 1_555 A CA 86 B CA CA 1_555 A ASP 38 A OD1 ASP 38 1_555 130.4 A ASP 28 A OD1 ASP 28 1_555 A CA 86 B CA CA 1_555 A ASP 38 A OD1 ASP 38 1_555 124.9 A SER 30 A O SER 30 1_555 A CA 86 B CA CA 1_555 A ASP 38 A OD1 ASP 38 1_555 75.3 A GLU 32 A OE1 GLU 32 1_555 A CA 86 B CA CA 1_555 A ASP 38 A OD1 ASP 38 1_555 64.1 A ASP 38 A O ASP 38 1_555 A CA 86 B CA CA 1_555 A ASP 38 A OD1 ASP 38 1_555 74.9 A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 A GLU 39 A OE1 GLU 39 1_555 136.8 A CYS 27 A N CYS 27 1_555 A CA 86 B CA CA 1_555 A GLU 39 A OE1 GLU 39 1_555 86.6 A ASP 28 A OD1 ASP 28 1_555 A CA 86 B CA CA 1_555 A GLU 39 A OE1 GLU 39 1_555 73.3 A SER 30 A O SER 30 1_555 A CA 86 B CA CA 1_555 A GLU 39 A OE1 GLU 39 1_555 60.7 A GLU 32 A OE1 GLU 32 1_555 A CA 86 B CA CA 1_555 A GLU 39 A OE1 GLU 39 1_555 121.8 A ASP 38 A O ASP 38 1_555 A CA 86 B CA CA 1_555 A GLU 39 A OE1 GLU 39 1_555 94.4 A ASP 38 A OD1 ASP 38 1_555 A CA 86 B CA CA 1_555 A GLU 39 A OE1 GLU 39 1_555 115.6 A TRP 68 A O TRP 68 1_555 A CA 87 C CA CA 1_555 A ASP 71 A OD2 ASP 71 1_555 91.1 A TRP 68 A O TRP 68 1_555 A CA 87 C CA CA 1_555 A GLN 73 A O GLN 73 1_555 155.2 A ASP 71 A OD2 ASP 71 1_555 A CA 87 C CA CA 1_555 A GLN 73 A O GLN 73 1_555 95.5 A TRP 68 A O TRP 68 1_555 A CA 87 C CA CA 1_555 A ASP 75 A OD2 ASP 75 1_555 135.4 A ASP 71 A OD2 ASP 71 1_555 A CA 87 C CA CA 1_555 A ASP 75 A OD2 ASP 75 1_555 113.3 A GLN 73 A O GLN 73 1_555 A CA 87 C CA CA 1_555 A ASP 75 A OD2 ASP 75 1_555 62.4 A TRP 68 A O TRP 68 1_555 A CA 87 C CA CA 1_555 A ASP 81 A OD2 ASP 81 1_555 84.0 A ASP 71 A OD2 ASP 71 1_555 A CA 87 C CA CA 1_555 A ASP 81 A OD2 ASP 81 1_555 169.5 A GLN 73 A O GLN 73 1_555 A CA 87 C CA CA 1_555 A ASP 81 A OD2 ASP 81 1_555 92.8 A ASP 75 A OD2 ASP 75 1_555 A CA 87 C CA CA 1_555 A ASP 81 A OD2 ASP 81 1_555 65.3 A TRP 68 A O TRP 68 1_555 A CA 87 C CA CA 1_555 A GLU 82 A OE1 GLU 82 1_555 97.9 A ASP 71 A OD2 ASP 71 1_555 A CA 87 C CA CA 1_555 A GLU 82 A OE1 GLU 82 1_555 129.7 A GLN 73 A O GLN 73 1_555 A CA 87 C CA CA 1_555 A GLU 82 A OE1 GLU 82 1_555 59.9 A ASP 75 A OD2 ASP 75 1_555 A CA 87 C CA CA 1_555 A GLU 82 A OE1 GLU 82 1_555 94.0 A ASP 81 A OD2 ASP 81 1_555 A CA 87 C CA CA 1_555 A GLU 82 A OE1 GLU 82 1_555 60.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 13 A O PHE 13 A N ILE 21 A N ILE 21 A N PHE 54 A N PHE 54 A O ILE 64 A O ILE 64 1 7.28 0.90 109.00 116.28 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 1 7.75 1.10 130.40 138.15 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 1 8.57 1.10 114.20 122.77 A A A CA CB SG CYS CYS CYS 27 27 27 N 1 7.26 0.90 109.00 116.26 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 2 7.17 0.90 109.00 116.17 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 2 7.75 1.10 130.40 138.15 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 2 7.38 0.90 109.00 116.38 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 3 7.05 0.90 109.00 116.05 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 3 7.91 1.10 130.40 138.31 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 3 7.18 1.10 114.20 121.38 A A A CA CB SG CYS CYS CYS 27 27 27 N 3 7.44 0.90 109.00 116.44 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 3 -3.03 0.50 120.30 117.27 A A A NE CZ NH2 ARG ARG ARG 69 69 69 N 4 7.33 0.90 109.00 116.33 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 4 7.60 1.10 130.40 138.00 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 4 7.22 1.10 114.20 121.42 A A A CA CB SG CYS CYS CYS 49 49 49 N 4 7.48 0.90 109.00 116.48 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 4 6.76 1.10 130.40 137.16 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 5 7.29 0.90 109.00 116.29 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 5 7.91 1.10 130.40 138.31 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 5 7.42 0.90 109.00 116.42 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 5 7.06 1.10 130.40 137.46 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 5 -9.18 0.90 118.30 109.12 A A A CB CG OD1 ASP ASP ASP 71 71 71 N 6 7.38 0.90 109.00 116.38 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 6 7.62 1.10 130.40 138.02 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 6 8.77 1.10 114.20 122.97 A A A CA CB SG CYS CYS CYS 27 27 27 N 6 -3.06 0.50 120.30 117.24 A A A NE CZ NH2 ARG ARG ARG 59 59 59 N 6 7.36 0.90 109.00 116.36 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 7 7.34 0.90 109.00 116.34 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 7 8.01 1.10 130.40 138.41 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 7 7.46 1.10 114.20 121.66 A A A CA CB SG CYS CYS CYS 44 44 44 N 7 7.32 0.90 109.00 116.32 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 7 6.84 1.10 130.40 137.24 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 7 -9.37 0.90 118.30 108.93 A A A CB CG OD1 ASP ASP ASP 71 71 71 N 8 7.18 0.90 109.00 116.18 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 8 7.72 1.10 130.40 138.12 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 8 7.12 1.10 114.20 121.32 A A A CA CB SG CYS CYS CYS 27 27 27 N 8 -6.16 1.00 110.10 103.94 A A A CG CD1 NE1 TRP TRP TRP 68 68 68 N 8 7.50 0.90 109.00 116.50 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 8 7.34 1.10 130.40 137.74 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 8 -9.46 0.90 118.30 108.84 A A A CB CG OD1 ASP ASP ASP 71 71 71 N 8 12.01 1.10 114.20 126.21 A A A CA CB SG CYS CYS CYS 76 76 76 N 9 7.12 1.10 114.20 121.32 A A A CA CB SG CYS CYS CYS 15 15 15 N 9 7.13 0.90 109.00 116.13 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 9 8.05 1.10 130.40 138.45 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 9 9.56 1.10 114.20 123.76 A A A CA CB SG CYS CYS CYS 27 27 27 N 9 7.20 1.10 114.20 121.40 A A A CA CB SG CYS CYS CYS 44 44 44 N 9 -3.16 0.50 120.30 117.14 A A A NE CZ NH2 ARG ARG ARG 59 59 59 N 9 7.49 0.90 109.00 116.49 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 9 6.67 1.10 130.40 137.07 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 10 7.30 0.90 109.00 116.30 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 10 7.76 1.10 130.40 138.16 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 10 -6.17 1.00 110.10 103.93 A A A CG CD1 NE1 TRP TRP TRP 68 68 68 N 10 7.65 0.90 109.00 116.65 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 10 7.53 1.10 130.40 137.93 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 10 -9.59 0.90 118.30 108.71 A A A CB CG OD2 ASP ASP ASP 71 71 71 N 11 7.24 0.90 109.00 116.24 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 11 8.00 1.10 130.40 138.40 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 11 7.48 0.90 109.00 116.48 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 11 6.86 1.10 130.40 137.26 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 12 7.31 0.90 109.00 116.31 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 12 7.66 1.10 130.40 138.06 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 12 13.82 1.10 114.20 128.02 A A A CA CB SG CYS CYS CYS 27 27 27 N 12 9.57 1.10 114.20 123.77 A A A CA CB SG CYS CYS CYS 44 44 44 N 12 7.45 1.10 114.20 121.65 A A A CA CB SG CYS CYS CYS 56 56 56 N 12 7.37 0.90 109.00 116.37 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 13 7.19 0.90 109.00 116.19 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 13 8.28 1.10 130.40 138.68 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 13 8.26 1.10 114.20 122.46 A A A CA CB SG CYS CYS CYS 27 27 27 N 13 7.43 0.90 109.00 116.43 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 14 7.32 0.90 109.00 116.32 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 14 7.70 1.10 130.40 138.10 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 14 9.55 1.10 114.20 123.75 A A A CA CB SG CYS CYS CYS 27 27 27 N 14 7.25 0.90 109.00 116.25 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 14 6.71 1.10 130.40 137.11 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 15 7.19 0.90 109.00 116.19 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 15 7.86 1.10 130.40 138.26 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 15 7.53 1.10 114.20 121.73 A A A CA CB SG CYS CYS CYS 27 27 27 N 15 -6.06 1.00 110.10 104.04 A A A CG CD1 NE1 TRP TRP TRP 68 68 68 N 15 7.56 0.90 109.00 116.56 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 15 6.90 1.10 130.40 137.30 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 15 -8.52 0.90 118.30 109.78 A A A CB CG OD1 ASP ASP ASP 71 71 71 N 16 7.26 0.90 109.00 116.26 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 16 7.88 1.10 130.40 138.28 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 16 7.41 1.10 114.20 121.61 A A A CA CB SG CYS CYS CYS 56 56 56 N 16 7.41 0.90 109.00 116.41 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 16 6.61 1.10 130.40 137.01 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 17 7.23 0.90 109.00 116.23 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 17 7.98 1.10 130.40 138.38 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 17 9.56 1.10 114.20 123.76 A A A CA CB SG CYS CYS CYS 49 49 49 N 17 -3.12 0.50 120.30 117.18 A A A NE CZ NH2 ARG ARG ARG 59 59 59 N 17 7.26 0.90 109.00 116.26 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 18 7.22 0.90 109.00 116.22 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 18 7.57 1.10 130.40 137.97 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 18 7.63 1.10 114.20 121.83 A A A CA CB SG CYS CYS CYS 27 27 27 N 18 -6.05 1.00 110.10 104.05 A A A CG CD1 NE1 TRP TRP TRP 68 68 68 N 18 7.50 0.90 109.00 116.50 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 18 7.67 1.10 130.40 138.07 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 18 -9.87 0.90 118.30 108.43 A A A CB CG OD1 ASP ASP ASP 71 71 71 N 19 7.26 0.90 109.00 116.26 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 19 7.99 1.10 130.40 138.39 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 19 -6.04 1.00 110.10 104.06 A A A CG CD1 NE1 TRP TRP TRP 68 68 68 N 19 7.45 0.90 109.00 116.45 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 19 7.32 1.10 130.40 137.72 A A A NE1 CE2 CZ2 TRP TRP TRP 68 68 68 N 19 -8.27 0.90 118.30 110.03 A A A CB CG OD2 ASP ASP ASP 71 71 71 N 20 7.30 0.90 109.00 116.30 A A A CD1 NE1 CE2 TRP TRP TRP 25 25 25 N 20 7.64 1.10 130.40 138.04 A A A NE1 CE2 CZ2 TRP TRP TRP 25 25 25 N 20 8.55 1.10 114.20 122.75 A A A CA CB SG CYS CYS CYS 27 27 27 N 20 7.37 0.90 109.00 116.37 A A A CD1 NE1 CE2 TRP TRP TRP 68 68 68 N 1 A SER 2 -143.90 -48.98 1 A VAL 4 44.91 163.36 1 A GLU 9 -148.75 42.41 1 A ARG 10 -136.74 -118.35 1 A ASP 35 -130.46 -55.51 1 A SER 40 -87.97 38.04 1 A GLN 41 52.44 18.49 1 A THR 43 -155.34 46.26 1 A SER 46 -101.17 -166.66 1 A VAL 47 34.12 58.94 1 A THR 48 56.42 83.82 1 A LYS 50 -161.89 90.41 1 A SER 51 -167.56 45.13 1 A SER 80 -62.38 7.90 1 A GLU 82 -158.90 -51.88 2 A SER 2 -140.85 -48.22 2 A ALA 3 -86.54 31.55 2 A ARG 7 -98.08 -158.80 2 A GLU 9 -147.63 43.94 2 A ARG 10 -140.68 -119.92 2 A ASP 35 -129.14 -56.56 2 A SER 40 -92.25 32.74 2 A THR 43 -145.48 40.69 2 A LEU 45 -78.26 29.82 2 A SER 46 -135.50 -102.14 2 A THR 48 33.49 56.56 2 A LYS 50 -166.25 77.57 2 A SER 51 -153.49 41.90 2 A PHE 67 -56.12 -9.73 2 A CYS 70 38.32 39.33 2 A GLU 82 -131.72 -62.20 3 A ALA 3 63.89 116.34 3 A VAL 4 -46.63 154.91 3 A GLU 9 -149.26 43.73 3 A ARG 10 -138.01 -118.84 3 A ASP 35 -130.20 -54.52 3 A SER 40 -89.23 41.51 3 A GLN 41 46.71 27.43 3 A THR 43 -152.73 22.00 3 A SER 46 -126.87 -86.32 3 A LYS 50 -168.38 73.41 3 A SER 51 -150.80 44.40 3 A ASN 61 -109.83 64.40 3 A GLN 66 -25.81 -35.54 3 A SER 80 -77.98 31.90 3 A GLU 82 -131.52 -60.21 4 A ASP 6 -74.39 -164.97 4 A GLU 9 -147.82 43.56 4 A ARG 10 -139.04 -117.14 4 A ASP 35 -132.50 -53.61 4 A SER 40 -91.18 35.38 4 A GLN 41 44.96 20.64 4 A SER 46 56.50 -166.88 4 A VAL 47 38.38 78.51 4 A CYS 49 -82.45 -83.56 4 A LYS 50 51.48 89.60 4 A ASP 53 -79.60 -163.50 4 A GLN 66 -23.91 -36.50 4 A PHE 67 -68.66 0.18 4 A SER 80 -73.29 20.62 4 A GLU 82 -134.15 -64.61 5 A ALA 3 -163.42 -44.30 5 A GLU 9 -160.62 22.78 5 A ARG 10 -141.00 -114.93 5 A ASP 35 -126.99 -53.88 5 A THR 43 -149.55 49.66 5 A VAL 47 34.13 97.43 5 A CYS 49 -49.81 168.52 5 A SER 51 -164.37 37.13 5 A ASN 61 -85.37 38.51 5 A TRP 68 -104.30 42.34 5 A SER 80 -72.93 24.80 5 A GLU 82 -137.88 -57.40 6 A SER 2 -158.83 -57.43 6 A ASP 6 59.33 5.00 6 A GLU 9 -153.79 47.46 6 A ARG 10 -141.04 -120.22 6 A ASP 35 -146.03 -52.33 6 A SER 40 -88.08 30.92 6 A GLN 41 47.25 18.89 6 A THR 43 -124.82 -124.01 6 A CYS 44 82.61 -4.58 6 A LEU 45 -79.00 35.36 6 A SER 46 -144.18 -62.44 6 A THR 48 50.80 81.92 6 A CYS 49 -65.56 -169.95 6 A LYS 50 -169.62 84.83 6 A SER 51 -153.51 42.89 6 A VAL 60 -130.25 -157.54 6 A ASN 61 -166.39 87.77 6 A ARG 62 -172.59 135.82 6 A GLN 66 -24.14 -36.18 6 A CYS 70 27.84 40.51 6 A SER 80 -76.11 30.89 7 A GLU 9 -155.50 47.19 7 A ARG 10 -141.43 -120.08 7 A GLN 34 74.95 33.38 7 A ASP 35 -134.90 -52.72 7 A SER 40 -89.99 42.83 7 A GLN 41 51.34 16.35 7 A THR 43 -144.18 34.20 7 A VAL 47 32.33 87.05 7 A CYS 49 -55.34 176.46 7 A LYS 50 -165.72 87.27 7 A SER 51 -164.52 41.71 7 A TRP 68 -102.10 42.83 7 A SER 80 -74.27 30.75 7 A GLU 82 -137.40 -57.33 8 A ALA 3 50.89 70.31 8 A GLU 9 -148.90 43.79 8 A ARG 10 -140.75 -118.29 8 A ASP 35 -137.44 -55.55 8 A SER 40 -85.72 37.97 8 A GLN 41 34.46 56.88 8 A CYS 44 -98.89 37.94 8 A SER 46 -134.47 -159.05 8 A VAL 47 60.99 -78.54 8 A THR 48 -141.83 42.69 8 A SER 51 39.14 33.24 8 A ASP 53 -77.79 -169.09 8 A PHE 54 -51.98 90.76 8 A VAL 60 -133.20 -156.79 8 A CYS 70 73.44 48.47 8 A SER 80 -76.05 28.76 9 A ASP 6 -62.25 97.60 9 A GLU 9 -157.40 46.51 9 A ARG 10 -146.35 -122.07 9 A GLN 34 72.02 31.88 9 A ASP 35 -136.64 -49.15 9 A SER 40 -88.33 36.71 9 A GLN 41 51.99 19.09 9 A THR 43 -139.90 -122.63 9 A VAL 47 55.65 -21.27 9 A THR 48 -89.25 42.07 9 A CYS 49 43.40 -174.07 9 A LYS 50 -37.14 133.32 9 A SER 51 -89.70 31.88 9 A GLN 66 -18.15 -40.38 9 A ASP 75 -132.98 -43.00 9 A SER 80 -75.02 22.77 9 A ASP 81 -140.73 15.75 9 A GLU 82 -126.32 -64.56 10 A GLU 9 -158.35 49.93 10 A ARG 10 -141.40 -122.15 10 A GLN 34 72.45 32.67 10 A ASP 35 -136.49 -51.20 10 A SER 40 -89.85 34.16 10 A GLN 41 44.54 29.81 10 A THR 43 -126.23 -100.78 10 A SER 46 -85.93 -100.42 10 A THR 48 34.42 49.11 10 A LYS 50 -131.42 -154.98 10 A SER 80 -77.85 33.26 11 A SER 2 -140.60 44.59 11 A GLU 9 -152.54 44.72 11 A ARG 10 -136.69 -121.68 11 A ASP 35 -141.30 -53.82 11 A SER 40 -87.67 31.09 11 A GLN 41 51.48 10.14 11 A THR 43 -151.00 51.04 11 A SER 46 -68.20 -179.31 11 A VAL 47 36.17 47.62 11 A THR 48 53.70 89.34 11 A CYS 49 -46.34 169.57 11 A LYS 50 -151.00 63.50 11 A SER 51 -152.48 50.15 11 A GLN 66 -24.52 -39.16 12 A ALA 3 56.23 91.84 12 A VAL 4 61.04 167.14 12 A GLU 9 -147.35 42.82 12 A ARG 10 -141.33 -117.78 12 A ASP 35 -135.99 -53.55 12 A SER 40 -90.06 40.30 12 A GLN 41 36.44 31.81 12 A THR 43 -124.96 -146.51 12 A CYS 44 45.65 20.27 12 A LEU 45 -163.51 -53.43 12 A SER 80 -72.80 21.72 12 A GLU 82 -134.27 -61.31 13 A SER 2 54.53 -151.00 13 A GLU 9 -144.53 41.88 13 A ARG 10 -141.20 -117.86 13 A GLN 34 74.09 32.33 13 A ASP 35 -134.54 -52.35 13 A SER 40 -90.28 30.43 13 A THR 43 -114.14 -119.33 13 A SER 46 60.05 88.35 13 A VAL 47 38.36 -60.95 13 A THR 48 -76.80 49.56 13 A CYS 49 37.46 -153.04 13 A SER 51 -88.25 31.85 13 A ASP 77 -32.36 -72.66 13 A SER 80 -76.38 25.98 13 A GLU 82 -129.09 -61.54 14 A ALA 3 55.79 86.84 14 A VAL 4 -70.69 -163.61 14 A GLU 9 -148.09 43.91 14 A ARG 10 -140.68 -118.78 14 A ASP 35 -151.03 -56.58 14 A GLN 41 38.98 37.74 14 A THR 43 -107.09 -127.81 14 A SER 46 66.50 -76.68 14 A VAL 47 -171.94 -28.63 14 A THR 48 -81.96 34.70 14 A CYS 49 37.29 -167.56 14 A LYS 50 -29.72 123.70 14 A ASN 61 -101.55 69.42 14 A GLU 82 -139.53 -63.32 15 A VAL 4 32.95 -119.82 15 A GLU 9 -151.48 45.07 15 A ARG 10 -142.09 -117.97 15 A ASP 35 -127.75 -53.50 15 A SER 40 -87.65 40.21 15 A THR 43 -152.20 30.57 15 A VAL 47 34.17 95.60 15 A THR 48 33.43 48.50 15 A CYS 49 -40.99 -83.93 15 A LYS 50 52.63 91.41 15 A SER 51 -146.59 34.12 15 A PHE 67 -68.51 1.30 15 A SER 80 -78.19 30.12 16 A ASP 6 61.02 134.50 16 A GLU 9 -145.87 42.09 16 A ARG 10 -136.81 -119.59 16 A GLN 34 74.29 39.96 16 A ASP 35 -142.16 -51.32 16 A GLN 41 46.38 28.80 16 A THR 43 -129.67 -120.71 16 A CYS 44 82.17 -22.85 16 A LEU 45 -78.92 20.08 16 A SER 46 -103.25 -61.57 16 A VAL 47 -55.85 100.67 16 A LYS 50 -143.85 32.56 16 A PRO 65 -55.90 108.30 16 A GLN 66 -28.27 -35.77 16 A SER 80 -74.70 21.93 16 A GLU 82 -133.65 -61.27 17 A VAL 4 -75.61 -169.42 17 A ASP 6 53.27 89.14 17 A GLU 9 -160.69 23.70 17 A ARG 10 -145.66 -116.86 17 A CYS 27 35.98 41.94 17 A GLN 34 75.34 39.31 17 A ASP 35 -142.09 -50.29 17 A SER 40 -93.98 36.80 17 A GLN 41 60.28 -11.37 17 A THR 43 -102.68 -121.21 17 A LEU 45 -79.53 -79.81 17 A SER 46 37.60 -103.91 17 A VAL 47 -49.44 -104.33 17 A CYS 49 -55.15 -174.81 17 A SER 51 60.21 61.81 17 A ASP 53 -115.32 -158.37 17 A SER 80 -72.72 21.45 17 A GLU 82 -136.53 -59.85 18 A ASP 6 -82.24 36.18 18 A GLU 9 -149.27 45.32 18 A ARG 10 -141.50 -118.75 18 A CYS 27 35.34 41.97 18 A ASP 35 -141.25 -53.48 18 A SER 40 -96.52 34.67 18 A GLN 41 29.66 57.42 18 A LEU 45 -83.38 31.70 18 A SER 46 -142.89 -65.45 18 A LYS 50 -170.26 90.26 18 A SER 51 -162.36 52.62 18 A TRP 68 -107.60 42.03 18 A SER 80 -75.67 33.07 19 A GLU 9 -145.77 42.47 19 A ARG 10 -137.92 -118.18 19 A GLN 34 76.78 30.39 19 A ASP 35 -131.80 -52.39 19 A SER 40 -86.17 38.97 19 A GLN 41 42.45 24.31 19 A VAL 47 37.67 -123.57 19 A LYS 50 -168.02 76.10 19 A SER 51 -149.94 40.23 19 A VAL 60 -135.68 -159.84 19 A SER 80 -75.47 29.56 20 A GLU 9 -148.06 43.44 20 A ARG 10 -139.53 -118.01 20 A ASP 35 -133.03 -53.02 20 A GLN 41 68.37 -0.25 20 A THR 43 -151.63 32.42 20 A SER 46 -88.73 -112.31 20 A THR 48 35.10 46.95 20 A LYS 50 -164.13 88.83 20 A SER 51 -171.66 49.56 20 A ASN 61 -82.11 46.72 20 A SER 80 -69.23 8.10 20 A GLU 82 -123.57 -62.32 NMR STRUCTURE OF A CONCATEMER OF THE FIRST AND SECOND LIGAND-BINDING MODULES OF THE HUMAN LDL RECEPTOR 1 N N 2 N N 2 N N A TYR 23 A TYR 23 HELX_P A TRP 25 A TRP 25 5 1 3 A GLN 66 A GLN 66 HELX_P A TRP 68 A TRP 68 5 2 3 disulf 2.017 A CYS 8 A SG CYS 8 1_555 A CYS 20 A SG CYS 20 1_555 disulf 2.016 A CYS 15 A SG CYS 15 1_555 A CYS 33 A SG CYS 33 1_555 disulf 2.019 A CYS 27 A SG CYS 27 1_555 A CYS 44 A SG CYS 44 1_555 disulf 2.021 A CYS 49 A SG CYS 49 1_555 A CYS 63 A SG CYS 63 1_555 disulf 2.021 A CYS 56 A SG CYS 56 1_555 A CYS 76 A SG CYS 76 1_555 disulf 2.020 A CYS 70 A SG CYS 70 1_555 A CYS 85 A SG CYS 85 1_555 metalc 2.667 A TRP 25 A O TRP 25 1_555 A CA 86 B CA CA 1_555 metalc 2.897 A CYS 27 A N CYS 27 1_555 A CA 86 B CA CA 1_555 metalc 2.657 A ASP 28 A OD1 ASP 28 1_555 A CA 86 B CA CA 1_555 metalc 2.617 A SER 30 A O SER 30 1_555 A CA 86 B CA CA 1_555 metalc 2.674 A GLU 32 A OE1 GLU 32 1_555 A CA 86 B CA CA 1_555 metalc 3.090 A ASP 38 A O ASP 38 1_555 A CA 86 B CA CA 1_555 metalc 2.675 A ASP 38 A OD1 ASP 38 1_555 A CA 86 B CA CA 1_555 metalc 2.695 A GLU 39 A OE1 GLU 39 1_555 A CA 86 B CA CA 1_555 metalc 2.657 A TRP 68 A O TRP 68 1_555 A CA 87 C CA CA 1_555 metalc 2.720 A ASP 71 A OD2 ASP 71 1_555 A CA 87 C CA CA 1_555 metalc 2.653 A GLN 73 A O GLN 73 1_555 A CA 87 C CA CA 1_555 metalc 2.659 A ASP 75 A OD2 ASP 75 1_555 A CA 87 C CA CA 1_555 metalc 2.722 A ASP 81 A OD2 ASP 81 1_555 A CA 87 C CA CA 1_555 metalc 2.658 A GLU 82 A OE1 GLU 82 1_555 A CA 87 C CA CA 1_555 LIPID BINDING PROTEIN Beta hairpin, 3-10 helix, calcium binding, LIPID BINDING PROTEIN LDLR_HUMAN UNP 1 P01130 22 104 1F5Y 3 85 P01130 A 1 3 85 1 cloning artifact GLY 1 1F5Y A P01130 UNP 1 1 cloning artifact SER 2 1F5Y A P01130 UNP 2 2 2 anti-parallel anti-parallel A PHE 13 A PHE 13 A GLN 14 A GLN 14 A CYS 20 A CYS 20 A ILE 21 A ILE 21 A PHE 54 A PHE 54 A SER 55 A SER 55 A CYS 63 A CYS 63 A ILE 64 A ILE 64 BINDING SITE FOR RESIDUE CA A 86 A CA 86 Software 8 BINDING SITE FOR RESIDUE CA A 87 A CA 87 Software 6 A TRP 25 A TRP 25 8 1_555 A VAL 26 A VAL 26 8 1_555 A CYS 27 A CYS 27 8 1_555 A ASP 28 A ASP 28 8 1_555 A SER 30 A SER 30 8 1_555 A GLU 32 A GLU 32 8 1_555 A ASP 38 A ASP 38 8 1_555 A GLU 39 A GLU 39 8 1_555 A TRP 68 A TRP 68 6 1_555 A ASP 71 A ASP 71 6 1_555 A GLN 73 A GLN 73 6 1_555 A ASP 75 A ASP 75 6 1_555 A ASP 81 A ASP 81 6 1_555 A GLU 82 A GLU 82 6 1_555 1 P 1