0.026983
0.000000
0.000000
0.000000
0.021401
0.000000
0.000000
0.000000
0.009034
0.00000
0.00000
0.00000
Vargason, J.M.
Eichman, B.F.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
37.060
46.727
110.689
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
H
N
111
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
758
761
10.1038/78985
10966645
The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
2000
10.2210/pdb1f6e/pdb
pdb_00001f6e
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
2000-02-21
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
1824.232
DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
6
syn
polymer
18.015
water
126
nat
water
no
yes
(DG)(DG)(DC)(DG)(5CM)(DC)
GGCGCC
A,B,C,D,E,F
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.52
51.27
VAPOR DIFFUSION, SITTING DROP
6.0
MGCL2, SPERMINE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
SODIUM CACODYLATE
1
SPERMINE
1
MGCL2
1
MGCL2
2
-7.650
1
19
A
1
B
12
-1.732
A_DG1:DC12_B
1
-1.524
-0.163
-0.106
-0.165
-1.725
1
19
A
2
B
11
1.994
A_DG2:5CM11_B
2
-8.138
-0.385
-0.031
-0.120
2.595
1
19
A
3
B
10
6.316
A_DC3:DG10_B
3
-10.939
0.391
-0.201
-0.092
-8.243
1
19
A
4
B
9
4.081
A_DG4:DC9_B
4
-11.347
-0.325
-0.241
-0.033
6.205
1
19
A
5
B
8
0.986
A_5CM5:DG8_B
5
-10.319
0.225
-0.129
-0.213
9.012
1
19
A
6
B
7
-0.673
A_DC6:DG7_B
6
-5.039
0.337
-0.121
-0.291
-7.875
1
19
C
13
D
24
1.122
C_DG13:DC24_D
7
-7.149
-0.333
0.149
-0.181
-0.968
1
19
C
14
D
23
-1.445
C_DG14:5CM23_D
8
-11.320
-0.308
0.001
-0.217
9.105
1
19
C
15
D
22
4.313
C_DC15:DG22_D
9
-11.515
0.240
-0.279
-0.110
-2.693
1
19
C
16
D
21
5.051
C_DG16:DC21_D
10
-7.721
-0.221
0.024
-0.084
4.377
1
19
C
17
D
20
0.879
C_5CM17:DG20_D
11
-8.964
0.321
-0.239
-0.177
5.589
1
19
C
18
D
19
-0.450
C_DC18:DG19_D
12
-3.553
0.271
0.074
-0.177
-4.749
1
19
E
26
F
35
0.477
E_DG26:5CM35_F
13
-8.494
-0.438
-0.049
-0.054
3.248
1
19
E
27
F
34
-0.843
E_DC27:DG34_F
14
-13.530
-0.015
-0.077
-0.355
-5.175
1
19
E
28
F
33
0.459
E_DG28:DC33_F
15
-11.770
-0.299
-0.188
-0.410
-0.122
1
19
E
29
F
32
1.209
E_5CM29:DG32_F
16
-10.437
0.245
0.078
-0.196
5.211
1
19
E
30
F
31
-1.486
E_DC30:DG31_F
17
-6.490
0.359
-0.010
-0.101
2.771
30.111
A
A
1
2
12.236
B
B
12
11
3.237
6.306
0.006
-1.899
AA_DG1DG2:5CM11DC12_BB
1
-2.255
4.376
29.373
-4.854
-0.440
3.024
33.458
A
A
2
3
8.177
B
B
11
10
3.278
4.692
0.235
-1.668
AA_DG2DC3:DG105CM11_BB
2
0.604
-1.052
33.131
-3.647
-0.311
2.043
27.955
A
A
3
4
31.938
B
B
10
9
3.568
14.682
-0.399
-1.953
AA_DC3DG4:DC9DG10_BB
3
-0.027
0.059
23.855
-7.281
0.821
2.917
32.055
A
A
4
5
8.476
B
B
9
8
3.084
4.663
-0.685
-1.159
AA_DG45CM5:DG8DC9_BB
4
-1.550
2.817
31.686
-2.874
0.983
2.936
32.626
A
A
5
6
12.336
B
B
8
7
3.252
6.878
0.652
-1.331
AA_5CM5DC6:DG7DG8_BB
5
1.558
-2.795
31.875
-3.514
-0.902
2.871
33.588
C
C
13
14
13.010
D
D
24
23
3.114
7.454
-0.832
-0.998
CC_DG13DG14:5CM23DC24_DD
6
-2.148
3.750
32.705
-2.859
1.114
2.890
34.257
C
C
14
15
13.055
D
D
23
22
3.119
7.627
0.653
-0.834
CC_DG14DC15:DG225CM23_DD
7
1.515
-2.593
33.389
-2.533
-0.886
1.945
32.058
C
C
15
16
33.075
D
D
22
21
3.491
17.297
0.101
-1.856
CC_DC15DG16:DC21DG22_DD
8
-3.426
6.550
26.879
-6.192
-0.744
2.938
33.247
C
C
16
17
7.688
D
D
21
20
3.193
4.384
-0.517
-1.483
CC_DG165CM17:DG20DC21_DD
9
2.157
-3.783
32.896
-3.282
1.244
2.753
30.127
C
C
17
18
14.229
D
D
20
19
3.289
7.325
0.605
-1.886
CC_5CM17DC18:DG19DG20_DD
10
0.363
-0.706
29.241
-5.031
-1.094
3.064
37.371
E
E
26
27
5.451
F
F
35
34
3.154
3.486
-0.602
-1.134
EE_DG26DC27:DG345CM35_FF
11
-1.884
2.945
37.168
-2.207
0.702
2.168
32.234
E
E
27
28
31.248
F
F
34
33
3.467
16.556
0.769
-1.690
EE_DC27DG28:DC33DG34_FF
12
1.102
-2.079
27.733
-5.786
-1.203
2.616
37.222
E
E
28
29
18.097
F
F
33
32
3.168
11.371
-0.472
-1.468
EE_DG285CM29:DG32DC33_FF
13
-2.451
3.900
35.419
-3.671
0.443
2.941
34.467
E
E
29
30
11.255
F
F
32
31
3.183
6.621
0.698
-1.256
EE_5CM29DC30:DG31DG32_FF
14
3.125
-5.313
33.703
-3.095
-0.719
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-08-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE
B-DNA HEXAMER GGCGCC WITH SPERMINE
E-DNA HEXAMER GGCGM5CC
E-DNA HEXAMER GGCGBR5CC
NDB
Y
NDB
2000-06-21
REL
REL
HOH
water
HOH
38
2
HOH
HOH
38
A
HOH
40
2
HOH
HOH
40
A
HOH
42
2
HOH
HOH
42
A
HOH
51
2
HOH
HOH
51
A
HOH
55
2
HOH
HOH
55
A
HOH
57
2
HOH
HOH
57
A
HOH
68
2
HOH
HOH
68
A
HOH
69
2
HOH
HOH
69
A
HOH
78
2
HOH
HOH
78
A
HOH
80
2
HOH
HOH
80
A
HOH
97
2
HOH
HOH
97
A
HOH
107
2
HOH
HOH
107
A
HOH
108
2
HOH
HOH
108
A
HOH
109
2
HOH
HOH
109
A
HOH
110
2
HOH
HOH
110
A
HOH
111
2
HOH
HOH
111
A
HOH
112
2
HOH
HOH
112
A
HOH
125
2
HOH
HOH
125
A
HOH
135
2
HOH
HOH
135
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
146
2
HOH
HOH
146
A
HOH
147
2
HOH
HOH
147
A
HOH
153
2
HOH
HOH
153
A
HOH
154
2
HOH
HOH
154
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
159
2
HOH
HOH
159
A
HOH
37
2
HOH
HOH
37
B
HOH
39
2
HOH
HOH
39
B
HOH
41
2
HOH
HOH
41
B
HOH
58
2
HOH
HOH
58
B
HOH
65
2
HOH
HOH
65
B
HOH
67
2
HOH
HOH
67
B
HOH
77
2
HOH
HOH
77
B
HOH
87
2
HOH
HOH
87
B
HOH
100
2
HOH
HOH
100
B
HOH
101
2
HOH
HOH
101
B
HOH
102
2
HOH
HOH
102
B
HOH
117
2
HOH
HOH
117
B
HOH
121
2
HOH
HOH
121
B
HOH
138
2
HOH
HOH
138
B
HOH
139
2
HOH
HOH
139
B
HOH
155
2
HOH
HOH
155
B
HOH
161
2
HOH
HOH
161
B
HOH
43
2
HOH
HOH
43
C
HOH
45
2
HOH
HOH
45
C
HOH
47
2
HOH
HOH
47
C
HOH
52
2
HOH
HOH
52
C
HOH
62
2
HOH
HOH
62
C
HOH
63
2
HOH
HOH
63
C
HOH
64
2
HOH
HOH
64
C
HOH
66
2
HOH
HOH
66
C
HOH
75
2
HOH
HOH
75
C
HOH
81
2
HOH
HOH
81
C
HOH
84
2
HOH
HOH
84
C
HOH
85
2
HOH
HOH
85
C
HOH
86
2
HOH
HOH
86
C
HOH
90
2
HOH
HOH
90
C
HOH
91
2
HOH
HOH
91
C
HOH
92
2
HOH
HOH
92
C
HOH
93
2
HOH
HOH
93
C
HOH
94
2
HOH
HOH
94
C
HOH
105
2
HOH
HOH
105
C
HOH
118
2
HOH
HOH
118
C
HOH
126
2
HOH
HOH
126
C
HOH
136
2
HOH
HOH
136
C
HOH
144
2
HOH
HOH
144
C
HOH
145
2
HOH
HOH
145
C
HOH
160
2
HOH
HOH
160
C
HOH
44
2
HOH
HOH
44
D
HOH
46
2
HOH
HOH
46
D
HOH
53
2
HOH
HOH
53
D
HOH
59
2
HOH
HOH
59
D
HOH
60
2
HOH
HOH
60
D
HOH
61
2
HOH
HOH
61
D
HOH
73
2
HOH
HOH
73
D
HOH
74
2
HOH
HOH
74
D
HOH
76
2
HOH
HOH
76
D
HOH
95
2
HOH
HOH
95
D
HOH
104
2
HOH
HOH
104
D
HOH
119
2
HOH
HOH
119
D
HOH
127
2
HOH
HOH
127
D
HOH
133
2
HOH
HOH
133
D
HOH
134
2
HOH
HOH
134
D
HOH
148
2
HOH
HOH
148
D
HOH
151
2
HOH
HOH
151
D
HOH
152
2
HOH
HOH
152
D
HOH
48
2
HOH
HOH
48
E
HOH
50
2
HOH
HOH
50
E
HOH
54
2
HOH
HOH
54
E
HOH
71
2
HOH
HOH
71
E
HOH
79
2
HOH
HOH
79
E
HOH
82
2
HOH
HOH
82
E
HOH
83
2
HOH
HOH
83
E
HOH
88
2
HOH
HOH
88
E
HOH
98
2
HOH
HOH
98
E
HOH
99
2
HOH
HOH
99
E
HOH
103
2
HOH
HOH
103
E
HOH
106
2
HOH
HOH
106
E
HOH
114
2
HOH
HOH
114
E
HOH
120
2
HOH
HOH
120
E
HOH
122
2
HOH
HOH
122
E
HOH
123
2
HOH
HOH
123
E
HOH
128
2
HOH
HOH
128
E
HOH
129
2
HOH
HOH
129
E
HOH
130
2
HOH
HOH
130
E
HOH
131
2
HOH
HOH
131
E
HOH
132
2
HOH
HOH
132
E
HOH
140
2
HOH
HOH
140
E
HOH
49
2
HOH
HOH
49
F
HOH
56
2
HOH
HOH
56
F
HOH
70
2
HOH
HOH
70
F
HOH
72
2
HOH
HOH
72
F
HOH
89
2
HOH
HOH
89
F
HOH
96
2
HOH
HOH
96
F
HOH
113
2
HOH
HOH
113
F
HOH
115
2
HOH
HOH
115
F
HOH
116
2
HOH
HOH
116
F
HOH
124
2
HOH
HOH
124
F
HOH
137
2
HOH
HOH
137
F
HOH
149
2
HOH
HOH
149
F
HOH
150
2
HOH
HOH
150
F
HOH
162
2
HOH
HOH
162
F
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
+C
5
n
5
5CM
5
A
C
6
n
6
DC
6
A
G
7
n
1
DG
7
B
G
8
n
2
DG
8
B
C
9
n
3
DC
9
B
G
10
n
4
DG
10
B
+C
11
n
5
5CM
11
B
C
12
n
6
DC
12
B
G
13
n
1
DG
13
C
G
14
n
2
DG
14
C
C
15
n
3
DC
15
C
G
16
n
4
DG
16
C
+C
17
n
5
5CM
17
C
C
18
n
6
DC
18
C
G
19
n
1
DG
19
D
G
20
n
2
DG
20
D
C
21
n
3
DC
21
D
G
22
n
4
DG
22
D
+C
23
n
5
5CM
23
D
C
24
n
6
DC
24
D
G
25
n
1
DG
25
E
G
26
n
2
DG
26
E
C
27
n
3
DC
27
E
G
28
n
4
DG
28
E
+C
29
n
5
5CM
29
E
C
30
n
6
DC
30
E
G
31
n
1
DG
31
F
G
32
n
2
DG
32
F
C
33
n
3
DC
33
F
G
34
n
4
DG
34
F
+C
35
n
5
5CM
35
F
C
36
n
6
DC
36
F
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
A
5CM
5
A
5CM
5
DC
B
5CM
11
B
5CM
5
DC
C
5CM
17
C
5CM
5
DC
D
5CM
23
D
5CM
5
DC
E
5CM
29
E
5CM
5
DC
F
5CM
35
F
5CM
5
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
E
O5'
DG
25
E
O5'
DG
1
1
Y
1
E
C5'
DG
25
E
C5'
DG
1
1
Y
1
E
C4'
DG
25
E
C4'
DG
1
1
Y
1
E
O4'
DG
25
E
O4'
DG
1
1
Y
1
E
C3'
DG
25
E
C3'
DG
1
1
Y
1
E
C2'
DG
25
E
C2'
DG
1
1
Y
1
E
C1'
DG
25
E
C1'
DG
1
1
Y
1
E
N9
DG
25
E
N9
DG
1
1
Y
1
E
C8
DG
25
E
C8
DG
1
1
Y
1
E
N7
DG
25
E
N7
DG
1
1
Y
1
E
C5
DG
25
E
C5
DG
1
1
Y
1
E
C6
DG
25
E
C6
DG
1
1
Y
1
E
O6
DG
25
E
O6
DG
1
1
Y
1
E
N1
DG
25
E
N1
DG
1
1
Y
1
E
C2
DG
25
E
C2
DG
1
1
Y
1
E
N2
DG
25
E
N2
DG
1
1
Y
1
E
N3
DG
25
E
N3
DG
1
1
Y
1
E
C4
DG
25
E
C4
DG
1
1
Y
1
F
C5'
DC
36
F
C5'
DC
6
1
Y
1
F
C4'
DC
36
F
C4'
DC
6
1
Y
1
F
O4'
DC
36
F
O4'
DC
6
1
Y
1
F
C3'
DC
36
F
C3'
DC
6
1
Y
1
F
O3'
DC
36
F
O3'
DC
6
1
Y
1
F
C2'
DC
36
F
C2'
DC
6
1
Y
1
F
C1'
DC
36
F
C1'
DC
6
1
Y
1
F
N1
DC
36
F
N1
DC
6
1
Y
1
F
C2
DC
36
F
C2
DC
6
1
Y
1
F
O2
DC
36
F
O2
DC
6
1
Y
1
F
N3
DC
36
F
N3
DC
6
1
Y
1
F
C4
DC
36
F
C4
DC
6
1
Y
1
F
N4
DC
36
F
N4
DC
6
1
Y
1
F
C5
DC
36
F
C5
DC
6
1
Y
1
F
C6
DC
36
F
C6
DC
6
1
Y
1
B
DG
8
0.063
SIDE CHAIN
1
B
DG
10
0.063
SIDE CHAIN
RESIDUES G E 25 AND C F 36 WERE DISORDERED AND WERE NOT
MODELLED WITH THE EXCEPTION OF THE BACKBONE ATOMS IN THE
COORDINATE SECTION
0.248
0.205
0.208
0.208
2.0
8.0
585
5740
5740
10.2
RANDOM
1
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
MLF
2.0
8.0
126
819
6
687
0
0.004
0.8
26.2
2.0
500
1F6E
6053
6053
0.0
0.0
0.055
1
21.2
4.6
88.6
0.384
2.00
2.07
1.9
62.9
phasing
AMoRE
refinement
CNS
0.9
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF THE A-DNA HEXAMER GGCGM5CC
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
covale
1.604
both
A
DG
4
A
O3'
DG
4
1_555
A
5CM
5
A
P
5CM
5
1_555
covale
1.612
both
A
5CM
5
A
O3'
5CM
5
1_555
A
DC
6
A
P
DC
6
1_555
covale
1.606
both
B
DG
10
B
O3'
DG
4
1_555
B
5CM
11
B
P
5CM
5
1_555
covale
1.605
both
B
5CM
11
B
O3'
5CM
5
1_555
B
DC
12
B
P
DC
6
1_555
covale
1.609
both
C
DG
16
C
O3'
DG
4
1_555
C
5CM
17
C
P
5CM
5
1_555
covale
1.610
both
C
5CM
17
C
O3'
5CM
5
1_555
C
DC
18
C
P
DC
6
1_555
covale
1.602
both
D
DG
22
D
O3'
DG
4
1_555
D
5CM
23
D
P
5CM
5
1_555
covale
1.606
both
D
5CM
23
D
O3'
5CM
5
1_555
D
DC
24
D
P
DC
6
1_555
covale
1.604
both
E
DG
28
E
O3'
DG
4
1_555
E
5CM
29
E
P
5CM
5
1_555
covale
1.605
both
E
5CM
29
E
O3'
5CM
5
1_555
E
DC
30
E
P
DC
6
1_555
covale
1.603
both
F
DG
34
F
O3'
DG
4
1_555
F
5CM
35
F
P
5CM
5
1_555
covale
1.614
both
F
5CM
35
F
O3'
5CM
5
1_555
F
DC
36
F
P
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
5CM
11
B
N3
5CM
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
5CM
11
B
O2
5CM
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
5CM
11
B
N4
5CM
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
N3
5CM
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
N4
5CM
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
O2
5CM
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
1
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N1
DG
1
1_555
D
DC
24
D
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N2
DG
1
1_555
D
DC
24
D
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
O6
DG
1
1_555
D
DC
24
D
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N1
DG
2
1_555
D
5CM
23
D
N3
5CM
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N2
DG
2
1_555
D
5CM
23
D
O2
5CM
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
O6
DG
2
1_555
D
5CM
23
D
N4
5CM
5
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N3
DC
3
1_555
D
DG
22
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N4
DC
3
1_555
D
DG
22
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
15
C
O2
DC
3
1_555
D
DG
22
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N1
DG
4
1_555
D
DC
21
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N2
DG
4
1_555
D
DC
21
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
O6
DG
4
1_555
D
DC
21
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
C
5CM
17
C
N3
5CM
5
1_555
D
DG
20
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
5CM
17
C
N4
5CM
5
1_555
D
DG
20
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
5CM
17
C
O2
5CM
5
1_555
D
DG
20
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N3
DC
6
1_555
D
DG
19
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N4
DC
6
1_555
D
DG
19
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
O2
DC
6
1_555
D
DG
19
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N1
DG
2
1_555
F
5CM
35
F
N3
5CM
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N2
DG
2
1_555
F
5CM
35
F
O2
5CM
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
O6
DG
2
1_555
F
5CM
35
F
N4
5CM
5
1_555
hydrog
WATSON-CRICK
E
DC
27
E
N3
DC
3
1_555
F
DG
34
F
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
27
E
N4
DC
3
1_555
F
DG
34
F
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
27
E
O2
DC
3
1_555
F
DG
34
F
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N1
DG
4
1_555
F
DC
33
F
N3
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N2
DG
4
1_555
F
DC
33
F
O2
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
O6
DG
4
1_555
F
DC
33
F
N4
DC
3
1_555
hydrog
WATSON-CRICK
E
5CM
29
E
N3
5CM
5
1_555
F
DG
32
F
N1
DG
2
1_555
hydrog
WATSON-CRICK
E
5CM
29
E
N4
5CM
5
1_555
F
DG
32
F
O6
DG
2
1_555
hydrog
WATSON-CRICK
E
5CM
29
E
O2
5CM
5
1_555
F
DG
32
F
N2
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
30
E
N3
DC
6
1_555
F
DG
31
F
N1
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
30
E
N4
DC
6
1_555
F
DG
31
F
O6
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
30
E
O2
DC
6
1_555
F
DG
31
F
N2
DG
1
1_555
DNA
A-DNA, E-DNA, DOUBLE HELIX, DNA
1F6E
PDB
1
1F6E
1
6
1F6E
1
6
1F6E
A
1
1
6
7
12
1F6E
7
12
1F6E
B
1
1
6
13
18
1F6E
13
18
1F6E
C
1
1
6
19
24
1F6E
19
24
1F6E
D
1
1
6
25
30
1F6E
25
30
1F6E
E
1
1
6
31
36
1F6E
31
36
1F6E
F
1
1
6
20
orthorhombic
C 2 2 21