70.93
59.791
12.151
-3.764
A
O5'
DG
1
ATOM
A
O5'
DG
1
1
1.00
1
O
62.88
60.991
12.096
-4.542
A
C5'
DG
1
ATOM
A
C5'
DG
1
1
1.00
1
C
59.18
62.183
12.593
-3.755
A
C4'
DG
1
ATOM
A
C4'
DG
1
1
1.00
1
C
58.31
62.795
13.700
-4.453
A
O4'
DG
1
ATOM
A
O4'
DG
1
1
1.00
1
O
55.39
61.833
13.126
-2.370
A
C3'
DG
1
ATOM
A
C3'
DG
1
1
1.00
1
C
56.19
61.938
12.077
-1.397
A
O3'
DG
1
ATOM
A
O3'
DG
1
1
1.00
1
O
56.40
62.926
14.149
-2.148
A
C2'
DG
1
ATOM
A
C2'
DG
1
1
1.00
1
C
56.09
63.076
14.750
-3.536
A
C1'
DG
1
ATOM
A
C1'
DG
1
1
1.00
1
C
55.89
62.130
15.830
-3.790
A
N9
DG
1
ATOM
A
N9
DG
1
1
1.00
1
N
55.24
61.079
15.830
-4.675
A
C8
DG
1
ATOM
A
C8
DG
1
1
1.00
1
C
53.67
60.400
16.945
-4.664
A
N7
DG
1
ATOM
A
N7
DG
1
1
1.00
1
N
52.95
61.044
17.729
-3.717
A
C5
DG
1
ATOM
A
C5
DG
1
1
1.00
1
C
49.31
60.767
19.044
-3.269
A
C6
DG
1
ATOM
A
C6
DG
1
1
1.00
1
C
47.86
59.864
19.808
-3.631
A
O6
DG
1
ATOM
A
O6
DG
1
1
1.00
1
O
47.49
61.672
19.452
-2.295
A
N1
DG
1
ATOM
A
N1
DG
1
1
1.00
1
N
46.08
62.712
18.694
-1.815
A
C2
DG
1
ATOM
A
C2
DG
1
1
1.00
1
C
42.13
63.474
19.260
-0.871
A
N2
DG
1
ATOM
A
N2
DG
1
1
1.00
1
N
50.46
62.984
17.472
-2.227
A
N3
DG
1
ATOM
A
N3
DG
1
1
1.00
1
N
54.20
62.115
17.054
-3.171
A
C4
DG
1
ATOM
A
C4
DG
1
1
1.00
1
C
58.74
60.988
12.095
-0.102
A
P
DG
2
ATOM
A
P
DG
1
2
1.00
1
P
61.28
61.133
10.808
0.622
A
OP1
DG
2
ATOM
A
OP1
DG
1
2
1.00
1
O
61.50
59.646
12.534
-0.559
A
OP2
DG
2
ATOM
A
OP2
DG
1
2
1.00
1
O
55.39
61.609
13.236
0.819
A
O5'
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2
ATOM
A
O5'
DG
1
2
1.00
1
O
51.12
62.967
13.150
1.272
A
C5'
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2
ATOM
A
C5'
DG
1
2
1.00
1
C
50.64
63.344
14.403
2.029
A
C4'
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2
ATOM
A
C4'
DG
1
2
1.00
1
C
50.02
63.406
15.538
1.139
A
O4'
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2
ATOM
A
O4'
DG
1
2
1.00
1
O
51.74
62.341
14.790
3.106
A
C3'
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2
ATOM
A
C3'
DG
1
2
1.00
1
C
52.82
62.665
14.137
4.339
A
O3'
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2
ATOM
A
O3'
DG
1
2
1.00
1
O
53.70
62.584
16.280
3.229
A
C2'
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2
ATOM
A
C2'
DG
1
2
1.00
1
C
50.31
62.876
16.691
1.792
A
C1'
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2
ATOM
A
C1'
DG
1
2
1.00
1
C
47.01
61.689
17.127
1.061
A
N9
DG
2
ATOM
A
N9
DG
1
2
1.00
1
N
44.41
60.939
16.401
0.164
A
C8
DG
2
ATOM
A
C8
DG
1
2
1.00
1
C
39.17
59.932
17.072
-0.324
A
N7
DG
2
ATOM
A
N7
DG
1
2
1.00
1
N
38.51
60.022
18.316
0.284
A
C5
DG
2
ATOM
A
C5
DG
1
2
1.00
1
C
35.46
59.206
19.468
0.147
A
C6
DG
2
ATOM
A
C6
DG
1
2
1.00
1
C
34.43
58.217
19.629
-0.576
A
O6
DG
2
ATOM
A
O6
DG
1
2
1.00
1
O
35.55
59.649
20.510
0.956
A
N1
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2
ATOM
A
N1
DG
1
2
1.00
1
N
35.59
60.746
20.457
1.782
A
C2
DG
2
ATOM
A
C2
DG
1
2
1.00
1
C
32.70
61.014
21.571
2.479
A
N2
DG
2
ATOM
A
N2
DG
1
2
1.00
1
N
37.80
61.521
19.392
1.914
A
N3
DG
2
ATOM
A
N3
DG
1
2
1.00
1
N
40.69
61.101
18.365
1.143
A
C4
DG
2
ATOM
A
C4
DG
1
2
1.00
1
C
54.41
61.575
14.079
5.516
A
P
DC
3
ATOM
A
P
DC
1
3
1.00
1
P
54.03
62.281
13.719
6.773
A
OP1
DC
3
ATOM
A
OP1
DC
1
3
1.00
1
O
54.95
60.431
13.258
5.047
A
OP2
DC
3
ATOM
A
OP2
DC
1
3
1.00
1
O
56.33
61.070
15.581
5.655
A
O5'
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3
ATOM
A
O5'
DC
1
3
1.00
1
O
55.06
61.895
16.564
6.290
A
C5'
DC
3
ATOM
A
C5'
DC
1
3
1.00
1
C
55.17
61.113
17.836
6.520
A
C4'
DC
3
ATOM
A
C4'
DC
1
3
1.00
1
C
54.06
60.835
18.503
5.275
A
O4'
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3
ATOM
A
O4'
DC
1
3
1.00
1
O
54.27
59.757
17.676
7.189
A
C3'
DC
3
ATOM
A
C3'
DC
1
3
1.00
1
C
57.70
59.907
17.629
8.614
A
O3'
DC
3
ATOM
A
O3'
DC
1
3
1.00
1
O
53.93
59.085
18.979
6.808
A
C2'
DC
3
ATOM
A
C2'
DC
1
3
1.00
1
C
53.67
59.685
19.326
5.448
A
C1'
DC
3
ATOM
A
C1'
DC
1
3
1.00
1
C
50.38
58.757
19.068
4.346
A
N1
DC
3
ATOM
A
N1
DC
1
3
1.00
1
N
49.27
57.878
20.080
3.987
A
C2
DC
3
ATOM
A
C2
DC
1
3
1.00
1
C
48.20
57.954
21.165
4.579
A
O2
DC
3
ATOM
A
O2
DC
1
3
1.00
1
O
51.40
56.972
19.860
3.008
A
N3
DC
3
ATOM
A
N3
DC
1
3
1.00
1
N
51.08
56.939
18.680
2.388
A
C4
DC
3
ATOM
A
C4
DC
1
3
1.00
1
C
50.82
56.019
18.501
1.436
A
N4
DC
3
ATOM
A
N4
DC
1
3
1.00
1
N
52.65
57.845
17.630
2.721
A
C5
DC
3
ATOM
A
C5
DC
1
3
1.00
1
C
50.59
58.732
17.867
3.697
A
C6
DC
3
ATOM
A
C6
DC
1
3
1.00
1
C
58.84
58.619
17.826
9.558
A
P
DG
4
ATOM
A
P
DG
1
4
1.00
1
P
60.77
59.038
17.579
10.962
A
OP1
DG
4
ATOM
A
OP1
DG
1
4
1.00
1
O
60.08
57.499
17.040
8.970
A
OP2
DG
4
ATOM
A
OP2
DG
1
4
1.00
1
O
57.41
58.251
19.372
9.421
A
O5'
DG
4
ATOM
A
O5'
DG
1
4
1.00
1
O
50.21
56.994
19.872
9.924
A
C5'
DG
4
ATOM
A
C5'
DG
1
4
1.00
1
C
42.05
56.817
21.329
9.561
A
C4'
DG
4
ATOM
A
C4'
DG
1
4
1.00
1
C
36.56
57.032
21.504
8.146
A
O4'
DG
4
ATOM
A
O4'
DG
1
4
1.00
1
O
40.74
55.405
21.837
9.827
A
C3'
DG
4
ATOM
A
C3'
DG
1
4
1.00
1
C
46.40
55.330
22.434
11.127
A
O3'
DG
4
ATOM
A
O3'
DG
1
4
1.00
1
O
35.13
55.227
22.889
8.752
A
C2'
DG
4
ATOM
A
C2'
DG
1
4
1.00
1
C
31.82
55.986
22.285
7.584
A
C1'
DG
4
ATOM
A
C1'
DG
1
4
1.00
1
C
27.42
55.198
21.415
6.719
A
N9
DG
4
ATOM
A
N9
DG
1
4
1.00
1
N
25.26
55.437
20.092
6.440
A
C8
DG
4
ATOM
A
C8
DG
1
4
1.00
1
C
28.43
54.576
19.582
5.602
A
N7
DG
4
ATOM
A
N7
DG
1
4
1.00
1
N
25.57
53.713
20.632
5.313
A
C5
DG
4
ATOM
A
C5
DG
1
4
1.00
1
C
27.05
52.574
20.685
4.462
A
C6
DG
4
ATOM
A
C6
DG
1
4
1.00
1
C
26.00
52.092
19.790
3.757
A
O6
DG
4
ATOM
A
O6
DG
1
4
1.00
1
O
26.01
51.989
21.945
4.469
A
N1
DG
4
ATOM
A
N1
DG
1
4
1.00
1
N
25.45
52.442
23.018
5.194
A
C2
DG
4
ATOM
A
C2
DG
1
4
1.00
1
C
27.56
51.750
24.153
5.058
A
N2
DG
4
ATOM
A
N2
DG
1
4
1.00
1
N
27.43
53.496
22.983
5.989
A
N3
DG
4
ATOM
A
N3
DG
1
4
1.00
1
N
25.07
54.080
21.767
6.001
A
C4
DG
4
ATOM
A
C4
DG
1
4
1.00
1
C
47.34
51.945
20.100
8.504
A
BR
CBR
5
HETATM
A
BR
CBR
1
5
1.00
1
BR
44.00
53.925
22.469
11.903
A
P
CBR
5
HETATM
A
P
CBR
1
5
1.00
1
P
54.62
54.118
23.167
13.197
A
OP1
CBR
5
HETATM
A
OP1
CBR
1
5
1.00
1
O
49.89
53.402
21.083
11.888
A
OP2
CBR
5
HETATM
A
OP2
CBR
1
5
1.00
1
O
47.54
52.989
23.377
10.989
A
O5'
CBR
5
HETATM
A
O5'
CBR
1
5
1.00
1
O
38.44
50.254
23.817
8.128
A
N1
CBR
5
HETATM
A
N1
CBR
1
5
1.00
1
N
37.04
51.060
22.785
8.514
A
C6
CBR
5
HETATM
A
C6
CBR
1
5
1.00
1
C
34.14
49.206
23.597
7.244
A
C2
CBR
5
HETATM
A
C2
CBR
1
5
1.00
1
C
40.47
48.462
24.540
6.957
A
O2
CBR
5
HETATM
A
O2
CBR
1
5
1.00
1
O
35.48
49.019
22.367
6.732
A
N3
CBR
5
HETATM
A
N3
CBR
1
5
1.00
1
N
37.54
49.826
21.371
7.091
A
C4
CBR
5
HETATM
A
C4
CBR
1
5
1.00
1
C
43.30
49.619
20.176
6.541
A
N4
CBR
5
HETATM
A
N4
CBR
1
5
1.00
1
N
34.88
50.881
21.559
8.024
A
C5
CBR
5
HETATM
A
C5
CBR
1
5
1.00
1
C
46.90
49.814
25.481
9.940
A
C2'
CBR
5
HETATM
A
C2'
CBR
1
5
1.00
1
C
44.44
53.370
24.718
10.640
A
C5'
CBR
5
HETATM
A
C5'
CBR
1
5
1.00
1
C
44.82
52.150
25.515
10.239
A
C4'
CBR
5
HETATM
A
C4'
CBR
1
5
1.00
1
C
45.80
51.891
25.330
8.833
A
O4'
CBR
5
HETATM
A
O4'
CBR
1
5
1.00
1
O
41.28
50.490
25.180
8.615
A
C1'
CBR
5
HETATM
A
C1'
CBR
1
5
1.00
1
C
48.04
50.876
25.071
10.938
A
C3'
CBR
5
HETATM
A
C3'
CBR
1
5
1.00
1
C
53.25
50.685
25.796
12.152
A
O3'
CBR
5
HETATM
A
O3'
CBR
1
5
1.00
1
O
56.79
49.541
25.323
13.172
A
P
DC
6
ATOM
A
P
DC
1
6
1.00
1
P
58.77
49.420
26.371
14.220
A
OP1
DC
6
ATOM
A
OP1
DC
1
6
1.00
1
O
52.89
49.802
23.907
13.558
A
OP2
DC
6
ATOM
A
OP2
DC
1
6
1.00
1
O
55.27
48.214
25.324
12.292
A
O5'
DC
6
ATOM
A
O5'
DC
1
6
1.00
1
O
48.98
47.227
24.292
12.453
A
C5'
DC
6
ATOM
A
C5'
DC
1
6
1.00
1
C
45.18
46.061
24.545
11.527
A
C4'
DC
6
ATOM
A
C4'
DC
1
6
1.00
1
C
43.36
46.472
24.303
10.166
A
O4'
DC
6
ATOM
A
O4'
DC
1
6
1.00
1
O
45.72
44.881
23.614
11.767
A
C3'
DC
6
ATOM
A
C3'
DC
1
6
1.00
1
C
53.68
43.997
24.228
12.699
A
O3'
DC
6
ATOM
A
O3'
DC
1
6
1.00
1
O
45.05
44.252
23.539
10.391
A
C2'
DC
6
ATOM
A
C2'
DC
1
6
1.00
1
C
40.92
45.460
23.584
9.471
A
C1'
DC
6
ATOM
A
C1'
DC
1
6
1.00
1
C
36.05
45.996
22.259
9.130
A
N1
DC
6
ATOM
A
N1
DC
1
6
1.00
1
N
33.49
45.417
21.563
8.071
A
C2
DC
6
ATOM
A
C2
DC
1
6
1.00
1
C
34.64
44.453
22.074
7.483
A
O2
DC
6
ATOM
A
O2
DC
1
6
1.00
1
O
31.60
45.915
20.354
7.719
A
N3
DC
6
ATOM
A
N3
DC
1
6
1.00
1
N
33.31
46.941
19.835
8.398
A
C4
DC
6
ATOM
A
C4
DC
1
6
1.00
1
C
31.47
47.407
18.643
8.014
A
N4
DC
6
ATOM
A
N4
DC
1
6
1.00
1
N
31.52
47.539
20.518
9.500
A
C5
DC
6
ATOM
A
C5
DC
1
6
1.00
1
C
32.44
47.041
21.718
9.827
A
C6
DC
6
ATOM
A
C6
DC
1
6
1.00
1
C
55.10
42.336
14.804
0.255
B
O5'
DG
7
ATOM
B
O5'
DG
1
1
1.00
1
O
46.26
41.013
15.151
-0.151
B
C5'
DG
7
ATOM
B
C5'
DG
1
1
1.00
1
C
45.46
40.553
16.443
0.484
B
C4'
DG
7
ATOM
B
C4'
DG
1
1
1.00
1
C
45.65
40.517
16.301
1.918
B
O4'
DG
7
ATOM
B
O4'
DG
1
1
1.00
1
O
47.52
41.463
17.633
0.237
B
C3'
DG
7
ATOM
B
C3'
DG
1
1
1.00
1
C
52.97
41.189
18.269
-1.014
B
O3'
DG
7
ATOM
B
O3'
DG
1
1
1.00
1
O
44.57
41.081
18.534
1.392
B
C2'
DG
7
ATOM
B
C2'
DG
1
1
1.00
1
C
40.11
40.940
17.524
2.521
B
C1'
DG
7
ATOM
B
C1'
DG
1
1
1.00
1
C
32.84
42.200
17.274
3.212
B
N9
DG
7
ATOM
B
N9
DG
1
1
1.00
1
N
30.93
43.017
16.176
3.096
B
C8
DG
7
ATOM
B
C8
DG
1
1
1.00
1
C
29.98
44.080
16.246
3.852
B
N7
DG
7
ATOM
B
N7
DG
1
1
1.00
1
N
27.07
43.956
17.465
4.505
B
C5
DG
7
ATOM
B
C5
DG
1
1
1.00
1
C
28.06
44.804
18.090
5.449
B
C6
DG
7
ATOM
B
C6
DG
1
1
1.00
1
C
31.57
45.874
17.677
5.920
B
O6
DG
7
ATOM
B
O6
DG
1
1
1.00
1
O
28.01
44.300
19.322
5.851
B
N1
DG
7
ATOM
B
N1
DG
1
1
1.00
1
N
28.62
43.126
19.878
5.403
B
C2
DG
7
ATOM
B
C2
DG
1
1
1.00
1
C
30.23
42.796
21.070
5.916
B
N2
DG
7
ATOM
B
N2
DG
1
1
1.00
1
N
29.95
42.330
19.306
4.521
B
N3
DG
7
ATOM
B
N3
DG
1
1
1.00
1
N
29.48
42.803
18.111
4.118
B
C4
DG
7
ATOM
B
C4
DG
1
1
1.00
1
C
51.30
42.370
19.051
-1.773
B
P
DG
8
ATOM
B
P
DG
1
2
1.00
1
P
54.72
41.892
19.358
-3.145
B
OP1
DG
8
ATOM
B
OP1
DG
1
2
1.00
1
O
46.34
43.636
18.284
-1.579
B
OP2
DG
8
ATOM
B
OP2
DG
1
2
1.00
1
O
45.70
42.477
20.422
-0.978
B
O5'
DG
8
ATOM
B
O5'
DG
1
2
1.00
1
O
45.51
41.367
21.327
-0.941
B
C5'
DG
8
ATOM
B
C5'
DG
1
2
1.00
1
C
48.99
41.654
22.446
0.031
B
C4'
DG
8
ATOM
B
C4'
DG
1
2
1.00
1
C
48.16
41.844
21.891
1.349
B
O4'
DG
8
ATOM
B
O4'
DG
1
2
1.00
1
O
51.86
42.943
23.197
-0.263
B
C3'
DG
8
ATOM
B
C3'
DG
1
2
1.00
1
C
55.09
42.734
24.242
-1.223
B
O3'
DG
8
ATOM
B
O3'
DG
1
2
1.00
1
O
49.23
43.263
23.773
1.101
B
C2'
DG
8
ATOM
B
C2'
DG
1
2
1.00
1
C
42.77
42.833
22.652
2.039
B
C1'
DG
8
ATOM
B
C1'
DG
1
2
1.00
1
C
37.22
43.928
21.761
2.398
B
N9
DG
8
ATOM
B
N9
DG
1
2
1.00
1
N
34.76
44.209
20.510
1.902
B
C8
DG
8
ATOM
B
C8
DG
1
2
1.00
1
C
31.74
45.279
19.980
2.435
B
N7
DG
8
ATOM
B
N7
DG
1
2
1.00
1
N
32.35
45.726
20.942
3.335
B
C5
DG
8
ATOM
B
C5
DG
1
2
1.00
1
C
32.55
46.845
20.944
4.210
B
C6
DG
8
ATOM
B
C6
DG
1
2
1.00
1
C
34.63
47.702
20.069
4.371
B
O6
DG
8
ATOM
B
O6
DG
1
2
1.00
1
O
32.02
46.918
22.122
4.945
B
N1
DG
8
ATOM
B
N1
DG
1
2
1.00
1
N
34.82
46.032
23.167
4.850
B
C2
DG
8
ATOM
B
C2
DG
1
2
1.00
1
C
36.34
46.264
24.226
5.644
B
N2
DG
8
ATOM
B
N2
DG
1
2
1.00
1
N
34.48
44.992
23.178
4.040
B
N3
DG
8
ATOM
B
N3
DG
1
2
1.00
1
N
35.01
44.901
22.043
3.320
B
C4
DG
8
ATOM
B
C4
DG
1
2
1.00
1
C
55.49
43.883
24.570
-2.300
B
P
DC
9
ATOM
B
P
DC
1
3
1.00
1
P
58.42
43.272
25.377
-3.391
B
OP1
DC
9
ATOM
B
OP1
DC
1
3
1.00
1
O
46.01
44.623
23.318
-2.635
B
OP2
DC
9
ATOM
B
OP2
DC
1
3
1.00
1
O
50.66
44.869
25.518
-1.492
B
O5'
DC
9
ATOM
B
O5'
DC
1
3
1.00
1
O
45.54
46.108
25.019
-0.996
B
C5'
DC
9
ATOM
B
C5'
DC
1
3
1.00
1
C
43.49
46.640
25.950
0.067
B
C4'
DC
9
ATOM
B
C4'
DC
1
3
1.00
1
C
42.12
46.444
25.334
1.356
B
O4'
DC
9
ATOM
B
O4'
DC
1
3
1.00
1
O
44.06
48.142
26.177
-0.060
B
C3'
DC
9
ATOM
B
C3'
DC
1
3
1.00
1
C
46.09
48.376
27.396
-0.778
B
O3'
DC
9
ATOM
B
O3'
DC
1
3
1.00
1
O
42.28
48.569
26.311
1.386
B
C2'
DC
9
ATOM
B
C2'
DC
1
3
1.00
1
C
40.95
47.687
25.259
2.033
B
C1'
DC
9
ATOM
B
C1'
DC
1
3
1.00
1
C
35.66
48.204
23.899
1.852
B
N1
DC
9
ATOM
B
N1
DC
1
3
1.00
1
N
34.79
49.210
23.451
2.697
B
C2
DC
9
ATOM
B
C2
DC
1
3
1.00
1
C
38.55
49.644
24.219
3.567
B
O2
DC
9
ATOM
B
O2
DC
1
3
1.00
1
O
34.45
49.687
22.199
2.552
B
N3
DC
9
ATOM
B
N3
DC
1
3
1.00
1
N
32.12
49.195
21.407
1.603
B
C4
DC
9
ATOM
B
C4
DC
1
3
1.00
1
C
34.77
49.693
20.171
1.509
B
N4
DC
9
ATOM
B
N4
DC
1
3
1.00
1
N
29.90
48.170
21.843
0.715
B
C5
DC
9
ATOM
B
C5
DC
1
3
1.00
1
C
31.09
47.707
23.087
0.874
B
C6
DC
9
ATOM
B
C6
DC
1
3
1.00
1
C
47.73
49.574
27.473
-1.845
B
P
DG
10
ATOM
B
P
DG
1
4
1.00
1
P
50.44
49.417
28.754
-2.580
B
OP1
DG
10
ATOM
B
OP1
DG
1
4
1.00
1
O
40.41
49.639
26.197
-2.600
B
OP2
DG
10
ATOM
B
OP2
DG
1
4
1.00
1
O
44.49
50.878
27.556
-0.933
B
O5'
DG
10
ATOM
B
O5'
DG
1
4
1.00
1
O
35.11
51.011
28.592
0.050
B
C5'
DG
10
ATOM
B
C5'
DG
1
4
1.00
1
C
29.07
51.997
28.180
1.118
B
C4'
DG
10
ATOM
B
C4'
DG
1
4
1.00
1
C
28.86
51.627
26.909
1.678
B
O4'
DG
10
ATOM
B
O4'
DG
1
4
1.00
1
O
26.66
53.434
28.004
0.670
B
C3'
DG
10
ATOM
B
C3'
DG
1
4
1.00
1
C
28.28
54.087
29.276
0.686
B
O3'
DG
10
ATOM
B
O3'
DG
1
4
1.00
1
O
24.68
53.983
27.135
1.783
B
C2'
DG
10
ATOM
B
C2'
DG
1
4
1.00
1
C
25.73
52.792
26.273
2.190
B
C1'
DG
10
ATOM
B
C1'
DG
1
4
1.00
1
C
26.45
52.847
24.921
1.649
B
N9
DG
10
ATOM
B
N9
DG
1
4
1.00
1
N
23.31
52.066
24.377
0.658
B
C8
DG
10
ATOM
B
C8
DG
1
4
1.00
1
C
25.27
52.391
23.144
0.374
B
N7
DG
10
ATOM
B
N7
DG
1
4
1.00
1
N
23.14
53.443
22.857
1.236
B
C5
DG
10
ATOM
B
C5
DG
1
4
1.00
1
C
25.20
54.208
21.673
1.400
B
C6
DG
10
ATOM
B
C6
DG
1
4
1.00
1
C
31.83
54.113
20.600
0.789
B
O6
DG
10
ATOM
B
O6
DG
1
4
1.00
1
O
23.03
55.174
21.821
2.390
B
N1
DG
10
ATOM
B
N1
DG
1
4
1.00
1
N
21.59
55.378
22.959
3.127
B
C2
DG
10
ATOM
B
C2
DG
1
4
1.00
1
C
20.24
56.360
22.915
4.036
B
N2
DG
10
ATOM
B
N2
DG
1
4
1.00
1
N
21.65
54.672
24.062
2.987
B
N3
DG
10
ATOM
B
N3
DG
1
4
1.00
1
N
24.14
53.729
23.942
2.031
B
C4
DG
10
ATOM
B
C4
DG
1
4
1.00
1
C
34.93
55.358
24.832
-1.283
B
BR
CBR
11
HETATM
B
BR
CBR
1
5
1.00
1
BR
23.92
55.489
29.461
-0.069
B
P
CBR
11
HETATM
B
P
CBR
1
5
1.00
1
P
27.45
55.865
30.892
-0.008
B
OP1
CBR
11
HETATM
B
OP1
CBR
1
5
1.00
1
O
23.87
55.391
28.778
-1.379
B
OP2
CBR
11
HETATM
B
OP2
CBR
1
5
1.00
1
O
22.32
56.521
28.648
0.820
B
O5'
CBR
11
HETATM
B
O5'
CBR
1
5
1.00
1
O
24.82
58.090
25.036
1.781
B
N1
CBR
11
HETATM
B
N1
CBR
1
5
1.00
1
N
26.54
57.103
25.353
0.889
B
C6
CBR
11
HETATM
B
C6
CBR
1
5
1.00
1
C
25.68
58.667
23.768
1.771
B
C2
CBR
11
HETATM
B
C2
CBR
1
5
1.00
1
C
31.03
59.559
23.514
2.592
B
O2
CBR
11
HETATM
B
O2
CBR
1
5
1.00
1
O
26.14
58.244
22.852
0.869
B
N3
CBR
11
HETATM
B
N3
CBR
1
5
1.00
1
N
26.51
57.290
23.172
-0.006
B
C4
CBR
11
HETATM
B
C4
CBR
1
5
1.00
1
C
25.57
56.918
22.244
-0.887
B
N4
CBR
11
HETATM
B
N4
CBR
1
5
1.00
1
N
25.82
56.681
24.460
-0.018
B
C5
CBR
11
HETATM
B
C5
CBR
1
5
1.00
1
C
23.46
59.807
26.779
2.272
B
C2'
CBR
11
HETATM
B
C2'
CBR
1
5
1.00
1
C
21.97
56.953
29.156
2.080
B
C5'
CBR
11
HETATM
B
C5'
CBR
1
5
1.00
1
C
22.42
58.060
28.287
2.629
B
C4'
CBR
11
HETATM
B
C4'
CBR
1
5
1.00
1
C
23.56
57.555
26.985
2.974
B
O4'
CBR
11
HETATM
B
O4'
CBR
1
5
1.00
1
O
24.05
58.582
26.015
2.760
B
C1'
CBR
11
HETATM
B
C1'
CBR
1
5
1.00
1
C
23.82
59.185
28.011
1.650
B
C3'
CBR
11
HETATM
B
C3'
CBR
1
5
1.00
1
C
26.34
60.125
29.082
1.625
B
O3'
CBR
11
HETATM
B
O3'
CBR
1
5
1.00
1
O
25.53
61.132
29.200
0.391
B
P
DC
12
ATOM
B
P
DC
1
6
1.00
1
P
31.33
62.007
30.373
0.611
B
OP1
DC
12
ATOM
B
OP1
DC
1
6
1.00
1
O
25.22
60.328
29.096
-0.855
B
OP2
DC
12
ATOM
B
OP2
DC
1
6
1.00
1
O
27.61
62.016
27.890
0.515
B
O5'
DC
12
ATOM
B
O5'
DC
1
6
1.00
1
O
23.55
62.956
27.739
1.578
B
C5'
DC
12
ATOM
B
C5'
DC
1
6
1.00
1
C
25.90
63.796
26.505
1.340
B
C4'
DC
12
ATOM
B
C4'
DC
1
6
1.00
1
C
23.33
62.954
25.340
1.408
B
O4'
DC
12
ATOM
B
O4'
DC
1
6
1.00
1
O
25.62
64.460
26.436
-0.027
B
C3'
DC
12
ATOM
B
C3'
DC
1
6
1.00
1
C
33.88
65.718
27.120
-0.051
B
O3'
DC
12
ATOM
B
O3'
DC
1
6
1.00
1
O
24.67
64.651
24.943
-0.197
B
C2'
DC
12
ATOM
B
C2'
DC
1
6
1.00
1
C
23.66
63.454
24.339
0.529
B
C1'
DC
12
ATOM
B
C1'
DC
1
6
1.00
1
C
24.94
62.359
23.921
-0.356
B
N1
DC
12
ATOM
B
N1
DC
1
6
1.00
1
N
27.65
62.389
22.632
-0.874
B
C2
DC
12
ATOM
B
C2
DC
1
6
1.00
1
C
26.56
63.341
21.892
-0.575
B
O2
DC
12
ATOM
B
O2
DC
1
6
1.00
1
O
26.16
61.389
22.220
-1.687
B
N3
DC
12
ATOM
B
N3
DC
1
6
1.00
1
N
20.26
60.391
23.047
-1.986
B
C4
DC
12
ATOM
B
C4
DC
1
6
1.00
1
C
22.78
59.434
22.589
-2.791
B
N4
DC
12
ATOM
B
N4
DC
1
6
1.00
1
N
18.44
60.336
24.374
-1.473
B
C5
DC
12
ATOM
B
C5
DC
1
6
1.00
1
C
21.07
61.331
24.766
-0.668
B
C6
DC
12
ATOM
B
C6
DC
1
6
1.00
1
C
66.59
62.163
22.428
8.399
A
O
HOH
23
HETATM
C
O
HOH
2
1.00
1
O
71.37
42.401
23.947
7.032
A
O
HOH
24
HETATM
C
O
HOH
2
1.00
1
O
95.24
57.177
17.292
-2.544
A
O
HOH
26
HETATM
C
O
HOH
2
1.00
1
O
72.99
60.241
22.247
5.667
A
O
HOH
35
HETATM
C
O
HOH
2
1.00
1
O
89.44
58.595
13.548
2.855
A
O
HOH
38
HETATM
C
O
HOH
2
1.00
1
O
80.32
57.960
21.435
-6.593
A
O
HOH
40
HETATM
C
O
HOH
2
1.00
1
O
59.57
51.170
22.053
-1.990
B
O
HOH
13
HETATM
D
O
HOH
2
1.00
1
O
66.20
46.018
17.364
0.846
B
O
HOH
14
HETATM
D
O
HOH
2
1.00
1
O
45.83
60.086
33.180
1.545
B
O
HOH
15
HETATM
D
O
HOH
2
1.00
1
O
73.08
45.918
14.304
3.758
B
O
HOH
16
HETATM
D
O
HOH
2
1.00
1
O
51.22
48.482
17.661
3.910
B
O
HOH
17
HETATM
D
O
HOH
2
1.00
1
O
39.16
58.009
24.745
-4.243
B
O
HOH
18
HETATM
D
O
HOH
2
1.00
1
O
34.27
58.428
27.470
-1.907
B
O
HOH
19
HETATM
D
O
HOH
2
1.00
1
O
0.00
47.938
27.496
-6.447
B
O
HOH
20
HETATM
D
O
HOH
2
1.00
1
O
49.26
62.348
24.002
4.415
B
O
HOH
21
HETATM
D
O
HOH
2
1.00
1
O
40.77
65.371
29.336
0.109
B
O
HOH
22
HETATM
D
O
HOH
2
1.00
1
O
70.29
66.298
28.969
3.250
B
O
HOH
25
HETATM
D
O
HOH
2
1.00
1
O
90.92
55.098
33.272
-2.656
B
O
HOH
27
HETATM
D
O
HOH
2
1.00
1
O
69.29
58.061
32.888
-0.224
B
O
HOH
28
HETATM
D
O
HOH
2
1.00
1
O
55.80
40.292
20.650
4.522
B
O
HOH
29
HETATM
D
O
HOH
2
1.00
1
O
60.11
64.243
34.308
-0.654
B
O
HOH
30
HETATM
D
O
HOH
2
1.00
1
O
88.14
43.624
21.973
-5.219
B
O
HOH
31
HETATM
D
O
HOH
2
1.00
1
O
50.41
61.997
32.415
-1.368
B
O
HOH
32
HETATM
D
O
HOH
2
1.00
1
O
0.00
64.717
32.156
1.731
B
O
HOH
33
HETATM
D
O
HOH
2
1.00
1
O
47.73
59.181
30.780
-2.669
B
O
HOH
34
HETATM
D
O
HOH
2
1.00
1
O
81.74
45.246
20.629
-1.212
B
O
HOH
36
HETATM
D
O
HOH
2
1.00
1
O
75.37
54.768
21.885
-3.104
B
O
HOH
37
HETATM
D
O
HOH
2
1.00
1
O
68.63
51.607
24.937
-3.030
B
O
HOH
39
HETATM
D
O
HOH
2
1.00
1
O
0.016556
0.000000
0.000000
0.000000
0.016556
0.000000
0.000000
0.000000
0.040479
0.00000
0.00000
0.00000
Vargason, J.M.
Eichman, B.F.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
60.400
60.400
24.704
C9 H13 Br N3 O7 P
386.093
n
5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
BR
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
N
N
7
N
C
N
8
N
C
N
9
N
O
N
10
N
N
N
11
N
C
N
12
N
N
N
13
N
C
N
14
N
C
N
15
N
C
N
16
R
C
N
17
N
O
N
18
R
C
N
19
S
C
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
N
47
N
N
N
48
N
C
N
49
N
O
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
C
N
54
N
C
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
O
N
70
N
P
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
C
N
75
R
C
N
76
N
O
N
77
S
C
N
78
N
O
N
79
N
C
N
80
R
C
Y
81
N
N
Y
82
N
C
Y
83
N
N
Y
84
N
C
N
85
N
C
N
86
N
O
N
87
N
N
N
88
N
C
N
89
N
N
N
90
N
N
Y
91
N
C
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
O
N
107
N
H
N
108
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
sing
Y
95
N
sing
Y
96
N
doub
N
97
N
sing
Y
98
N
sing
N
99
N
sing
Y
100
N
doub
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
758
761
10.1038/78985
10966645
The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
2000
10.2210/pdb1f6j/pdb
pdb_00001f6j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
1999-03-05
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
1889.101
DNA (5'-D(*GP*GP*CP*GP*(CBR)P*C)-3')
2
syn
polymer
18.015
water
28
nat
water
no
yes
(DG)(DG)(DC)(DG)(CBR)(DC)
GGCGCC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.95
58.37
VAPOR DIFFUSION, SITTING DROP
6.0
MGCL2, SPERMINE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
SODIUM CACODYLATE
1
SPERMINE
1
MGCL2
1
MGCL2
2
-4.408
1
19
A
1
B
12
3.260
A_DG1:DC12_B
1
5.668
-0.471
0.229
-0.230
-2.126
1
19
A
2
B
11
5.060
A_DG2:CBR11_B
2
-8.479
-0.297
-0.018
-0.255
-0.340
1
19
A
3
B
10
4.883
A_DC3:DG10_B
3
0.916
0.022
-0.101
-0.222
-7.327
1
19
A
4
B
9
8.181
A_DG4:DC9_B
4
-7.305
-0.685
-0.075
-0.018
-2.194
1
19
A
5
B
8
2.770
A_CBR5:DG8_B
5
-11.728
0.216
0.156
-0.237
7.425
1
19
A
6
B
7
2.396
A_DC6:DG7_B
6
-7.452
0.570
-0.133
-0.418
2.952
32.849
A
A
1
2
10.298
B
B
12
11
3.314
5.793
-0.197
-1.762
AA_DG1DG2:CBR11DC12_BB
1
1.314
-2.335
32.322
-4.075
0.566
3.230
32.722
A
A
2
3
2.552
B
B
11
10
3.316
1.437
0.636
-1.970
AA_DG2DC3:DG10CBR11_BB
2
0.080
-0.143
32.691
-3.745
-1.115
3.854
22.802
A
A
3
4
-5.579
B
B
10
9
3.661
-2.202
-0.229
-2.176
AA_DC3DG4:DC9DG10_BB
3
-0.278
0.704
22.695
-4.596
0.466
3.404
36.627
A
A
4
5
0.453
B
B
9
8
3.311
0.284
-1.323
-1.990
AA_DG4CBR5:DG8DC9_BB
4
-3.524
5.616
36.462
-3.207
1.607
2.618
28.721
A
A
5
6
13.504
B
B
8
7
3.014
6.609
0.708
-1.744
AA_CBR5DC6:DG7DG8_BB
5
4.865
-9.941
27.547
-4.823
-0.465
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-08-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE
B-DNA HEXAMER GGCGCC WITH SPERMINE
A-DNA HEXAMER GGCGM5CC
E-DNA HEXAMER GGCGM5CC
NDB
Y
NDB
2000-06-21
REL
REL
HOH
water
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
26
2
HOH
HOH
26
A
HOH
35
2
HOH
HOH
35
A
HOH
38
2
HOH
HOH
38
A
HOH
40
2
HOH
HOH
40
A
HOH
13
2
HOH
HOH
13
B
HOH
14
2
HOH
HOH
14
B
HOH
15
2
HOH
HOH
15
B
HOH
16
2
HOH
HOH
16
B
HOH
17
2
HOH
HOH
17
B
HOH
18
2
HOH
HOH
18
B
HOH
19
2
HOH
HOH
19
B
HOH
20
2
HOH
HOH
20
B
HOH
21
2
HOH
HOH
21
B
HOH
22
2
HOH
HOH
22
B
HOH
25
2
HOH
HOH
25
B
HOH
27
2
HOH
HOH
27
B
HOH
28
2
HOH
HOH
28
B
HOH
29
2
HOH
HOH
29
B
HOH
30
2
HOH
HOH
30
B
HOH
31
2
HOH
HOH
31
B
HOH
32
2
HOH
HOH
32
B
HOH
33
2
HOH
HOH
33
B
HOH
34
2
HOH
HOH
34
B
HOH
36
2
HOH
HOH
36
B
HOH
37
2
HOH
HOH
37
B
HOH
39
2
HOH
HOH
39
B
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
BRO
5
n
5
CBR
5
A
C
6
n
6
DC
6
A
G
7
n
1
DG
7
B
G
8
n
2
DG
8
B
C
9
n
3
DC
9
B
G
10
n
4
DG
10
B
BRO
11
n
5
CBR
11
B
C
12
n
6
DC
12
B
author_defined_assembly
2
dimeric
A
CBR
5
A
CBR
5
DC
B
CBR
11
B
CBR
5
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.256
0.193
0.2
0.2
2.25
8.0
226
2324
2324
9.7
RANDOM
1
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PARKINSON ET AL.
2.25
8.0
28
270
2
240
0
0.004
0.9
36.3
2.25
500
1F6J
2393
2393
0.0
0.0
0.05
1
39.3
12.9
99.9
0.347
2.25
2.33
12.0
99.9
phasing
AMoRE
refinement
X-PLOR
3.851
data reduction
d*TREK
data scaling
d*TREK
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGBR5CC
1
N
N
1
N
N
2
N
N
2
N
N
covale
1.605
both
A
DG
4
A
O3'
DG
4
1_555
A
CBR
5
A
P
CBR
5
1_555
covale
1.604
both
A
CBR
5
A
O3'
CBR
5
1_555
A
DC
6
A
P
DC
6
1_555
covale
1.603
both
B
DG
10
B
O3'
DG
4
1_555
B
CBR
11
B
P
CBR
5
1_555
covale
1.597
both
B
CBR
11
B
O3'
CBR
5
1_555
B
DC
12
B
P
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
CBR
11
B
N3
CBR
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
CBR
11
B
O2
CBR
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
CBR
11
B
N4
CBR
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
CBR
5
A
N3
CBR
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
CBR
5
A
N4
CBR
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
CBR
5
A
O2
CBR
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
1
1_555
DNA
E-DNA, DOUBLE HELIX, METHYLATION, DNA
1F6J
PDB
1
1F6J
1
6
1F6J
1
6
1F6J
A
1
1
6
7
12
1F6J
7
12
1F6J
B
1
1
6
96
tetragonal
P 43 21 2