0.022857
0.000000
0.000000
0.000000
0.017513
0.000000
0.000000
0.000000
0.007785
0.00000
0.00000
0.00000
Lau, A.Y.
Wyatt, M.D.
Glassner, B.J.
Samson, L.D.
Ellenberger, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90
90
90
43.75
57.10
128.45
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C5 H12 N O5 P
197.126
3-HYDROXY-PYRROLIDIN-2-YLMETHYL-MONOPHOSPHATE GROUP
DNA linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
NA
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
R
C
N
453
N
O
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
N
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
N
N
493
S
C
N
494
N
C
N
495
N
O
N
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
N
503
N
O
N
504
N
O
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
N
N
517
S
C
N
518
N
C
N
519
N
O
N
520
N
C
N
521
N
C
N
522
N
C
N
523
N
O
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
O
N
536
N
P
N
537
N
O
N
538
N
O
N
539
N
O
N
540
N
C
N
541
R
C
N
542
N
N
N
543
S
C
N
544
N
O
N
545
N
C
N
546
N
C
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
doub
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
13573
13578
10.1073/pnas.97.25.13573
11106395
Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG.
2000
10.2210/pdb1f6o/pdb
pdb_00001f6o
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-06-06
PHILLIPS
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X12C
NSLS
1.00
SYNCHROTRON
NSLS BEAMLINE X12C
3832.501
DNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3')
1
syn
polymer
3975.611
DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')
1
syn
polymer
24328.916
3-METHYL-ADENINE DNA GLYCOSYLASE
3.2.2.20
C-TERMINAL FRAGMENT
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
134
nat
water
AAG, ALKYLADENINE DNA GLYCOSYLASE
E.C.3.2.2.20
no
yes
(DG)(DA)(DC)(DA)(DT)(DG)(YRR)(DT)(DT)(DG)(DC)(DC)(DT)
GACATGNTTGCCT
D
polydeoxyribonucleotide
no
no
(DG)(DG)(DC)(DA)(DA)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DA)
GGCAATCATGTCA
E
polydeoxyribonucleotide
no
no
KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY
IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD
EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY
IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD
EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PLM1
1
2.47
50.27
VAPOR DIFFUSION, HANGING DROP
6.5
PEG 8000, magnesium acetate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
PEG 8000
1
magnesium acetate
1
sodium cacodylate
1
PEG 8000
2
2.354
1
19
D
1
E
25
-1.974
D_DG1:DC25_E
1
-12.161
-0.882
0.162
-0.471
0.237
1
20
D
2
E
24
1.594
D_DA2:DT24_E
2
-15.587
-0.050
-0.027
0.079
0.428
1
19
D
3
E
23
-1.234
D_DC3:DG23_E
3
-7.959
0.217
-0.172
0.062
-4.067
1
20
D
4
E
22
3.210
D_DA4:DT22_E
4
-11.862
0.392
0.008
0.078
1.853
1
20
D
5
E
21
-1.184
D_DT5:DA21_E
5
-4.904
-0.099
0.451
-0.213
8.483
1
19
D
6
E
20
4.045
D_DG6:DC20_E
6
10.645
-0.282
0.262
-0.037
-6.278
1
20
D
8
E
18
-0.313
D_DT8:DA18_E
7
-16.100
-0.120
0.168
-0.136
1.550
1
20
D
9
E
17
-3.087
D_DT9:DA17_E
8
-13.589
0.058
0.328
0.154
3.150
1
19
D
10
E
16
-0.711
D_DG10:DC16_E
9
1.801
0.087
-0.208
-0.224
4.113
1
19
D
11
E
15
-3.821
D_DC11:DG15_E
10
-10.622
-0.065
-0.193
0.049
-5.281
1
19
D
12
E
14
-8.393
D_DC12:DG14_E
11
-1.594
0.140
0.274
-0.505
3.363
41.074
D
D
1
2
8.617
E
E
25
24
3.369
6.025
-0.149
0.219
DD_DG1DA2:DT24DC25_EE
1
0.711
-1.017
40.642
-0.365
0.292
3.114
32.167
D
D
2
3
9.552
E
E
24
23
3.186
5.266
0.404
-0.322
DD_DA2DC3:DG23DT24_EE
2
2.270
-4.118
31.665
-1.496
-0.334
3.597
38.719
D
D
3
4
11.379
E
E
23
22
3.600
7.495
0.546
0.177
DD_DC3DA4:DT22DG23_EE
3
2.446
-3.714
37.938
-0.755
-0.490
2.834
25.292
D
D
4
5
18.367
E
E
22
21
3.134
7.909
-0.077
-0.482
DD_DA4DT5:DA21DT22_EE
4
-0.945
2.194
24.024
-3.254
-0.081
2.924
45.719
D
D
5
6
-13.229
E
E
21
20
3.317
-10.195
0.459
1.599
DD_DT5DG6:DC20DA21_EE
5
2.721
-3.531
44.548
2.919
-0.361
3.127
32.091
D
D
8
9
2.639
E
E
18
17
3.143
1.456
-0.041
-0.013
DD_DT8DT9:DA17DA18_EE
6
-3.380
6.127
31.885
-0.274
-0.509
3.547
35.125
D
D
9
10
1.329
E
E
17
16
3.423
0.799
1.086
0.509
DD_DT9DG10:DC16DA17_EE
7
4.790
-7.961
34.798
0.716
-1.033
3.226
33.556
D
D
10
11
1.972
E
E
16
15
3.190
1.138
-1.000
-0.149
DD_DG10DC11:DG15DC16_EE
8
-1.586
2.749
33.501
-0.441
1.477
3.320
38.315
D
D
11
12
12.280
E
E
15
14
3.581
7.995
-0.113
-0.912
DD_DC11DC12:DG14DG15_EE
9
-3.345
5.138
37.358
-2.459
-0.276
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-12-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision.
CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA.
CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA.
RCSB
Y
RCSB
2000-06-22
REL
NA
SODIUM ION
HOH
water
NA
1001
4
NA
NA
1001
A
WAT
6
5
HOH
HOH
14
D
WAT
13
5
HOH
HOH
15
D
WAT
14
5
HOH
HOH
16
D
WAT
17
5
HOH
HOH
17
D
WAT
18
5
HOH
HOH
18
D
WAT
24
5
HOH
HOH
19
D
WAT
33
5
HOH
HOH
20
D
WAT
35
5
HOH
HOH
21
D
WAT
41
5
HOH
HOH
22
D
WAT
45
5
HOH
HOH
23
D
WAT
47
5
HOH
HOH
24
D
WAT
51
5
HOH
HOH
25
D
WAT
60
5
HOH
HOH
26
D
WAT
65
5
HOH
HOH
27
D
WAT
69
5
HOH
HOH
28
D
WAT
70
5
HOH
HOH
29
D
WAT
72
5
HOH
HOH
30
D
WAT
74
5
HOH
HOH
31
D
WAT
84
5
HOH
HOH
32
D
WAT
86
5
HOH
HOH
33
D
WAT
114
5
HOH
HOH
34
D
WAT
117
5
HOH
HOH
35
D
WAT
121
5
HOH
HOH
36
D
WAT
125
5
HOH
HOH
37
D
WAT
133
5
HOH
HOH
38
D
WAT
20
5
HOH
HOH
27
E
WAT
53
5
HOH
HOH
28
E
WAT
61
5
HOH
HOH
29
E
WAT
66
5
HOH
HOH
30
E
WAT
92
5
HOH
HOH
31
E
WAT
100
5
HOH
HOH
32
E
WAT
102
5
HOH
HOH
33
E
WAT
109
5
HOH
HOH
34
E
WAT
118
5
HOH
HOH
35
E
WAT
123
5
HOH
HOH
36
E
WAT
127
5
HOH
HOH
37
E
WAT
129
5
HOH
HOH
38
E
WAT
1
5
HOH
HOH
1002
A
WAT
2
5
HOH
HOH
1003
A
WAT
3
5
HOH
HOH
1004
A
WAT
4
5
HOH
HOH
1005
A
WAT
5
5
HOH
HOH
1006
A
WAT
7
5
HOH
HOH
1007
A
WAT
8
5
HOH
HOH
1008
A
WAT
9
5
HOH
HOH
1009
A
WAT
10
5
HOH
HOH
1010
A
WAT
11
5
HOH
HOH
1011
A
WAT
12
5
HOH
HOH
1012
A
WAT
15
5
HOH
HOH
1013
A
WAT
16
5
HOH
HOH
1014
A
WAT
19
5
HOH
HOH
1015
A
WAT
21
5
HOH
HOH
1016
A
WAT
22
5
HOH
HOH
1017
A
WAT
23
5
HOH
HOH
1018
A
WAT
25
5
HOH
HOH
1019
A
WAT
26
5
HOH
HOH
1020
A
WAT
27
5
HOH
HOH
1021
A
WAT
28
5
HOH
HOH
1022
A
WAT
29
5
HOH
HOH
1023
A
WAT
30
5
HOH
HOH
1024
A
WAT
31
5
HOH
HOH
1025
A
WAT
32
5
HOH
HOH
1026
A
WAT
34
5
HOH
HOH
1027
A
WAT
36
5
HOH
HOH
1028
A
WAT
37
5
HOH
HOH
1029
A
WAT
38
5
HOH
HOH
1030
A
WAT
39
5
HOH
HOH
1031
A
WAT
40
5
HOH
HOH
1032
A
WAT
42
5
HOH
HOH
1033
A
WAT
43
5
HOH
HOH
1034
A
WAT
44
5
HOH
HOH
1035
A
WAT
46
5
HOH
HOH
1036
A
WAT
48
5
HOH
HOH
1037
A
WAT
49
5
HOH
HOH
1038
A
WAT
50
5
HOH
HOH
1039
A
WAT
52
5
HOH
HOH
1040
A
WAT
54
5
HOH
HOH
1041
A
WAT
55
5
HOH
HOH
1042
A
WAT
56
5
HOH
HOH
1043
A
WAT
57
5
HOH
HOH
1044
A
WAT
58
5
HOH
HOH
1045
A
WAT
59
5
HOH
HOH
1046
A
WAT
62
5
HOH
HOH
1047
A
WAT
63
5
HOH
HOH
1048
A
WAT
64
5
HOH
HOH
1049
A
WAT
67
5
HOH
HOH
1050
A
WAT
68
5
HOH
HOH
1051
A
WAT
71
5
HOH
HOH
1052
A
WAT
73
5
HOH
HOH
1053
A
WAT
75
5
HOH
HOH
1054
A
WAT
76
5
HOH
HOH
1055
A
WAT
77
5
HOH
HOH
1056
A
WAT
78
5
HOH
HOH
1057
A
WAT
79
5
HOH
HOH
1058
A
WAT
80
5
HOH
HOH
1059
A
WAT
81
5
HOH
HOH
1060
A
WAT
82
5
HOH
HOH
1061
A
WAT
83
5
HOH
HOH
1062
A
WAT
85
5
HOH
HOH
1063
A
WAT
87
5
HOH
HOH
1064
A
WAT
88
5
HOH
HOH
1065
A
WAT
89
5
HOH
HOH
1066
A
WAT
90
5
HOH
HOH
1067
A
WAT
91
5
HOH
HOH
1068
A
WAT
93
5
HOH
HOH
1069
A
WAT
94
5
HOH
HOH
1070
A
WAT
95
5
HOH
HOH
1071
A
WAT
96
5
HOH
HOH
1072
A
WAT
97
5
HOH
HOH
1073
A
WAT
98
5
HOH
HOH
1074
A
WAT
99
5
HOH
HOH
1075
A
WAT
101
5
HOH
HOH
1076
A
WAT
103
5
HOH
HOH
1077
A
WAT
104
5
HOH
HOH
1078
A
WAT
105
5
HOH
HOH
1079
A
WAT
106
5
HOH
HOH
1080
A
WAT
107
5
HOH
HOH
1081
A
WAT
108
5
HOH
HOH
1082
A
WAT
110
5
HOH
HOH
1083
A
WAT
111
5
HOH
HOH
1084
A
WAT
112
5
HOH
HOH
1085
A
WAT
113
5
HOH
HOH
1086
A
WAT
115
5
HOH
HOH
1087
A
WAT
116
5
HOH
HOH
1088
A
WAT
119
5
HOH
HOH
1089
A
WAT
120
5
HOH
HOH
1090
A
WAT
122
5
HOH
HOH
1091
A
WAT
124
5
HOH
HOH
1092
A
WAT
126
5
HOH
HOH
1093
A
WAT
128
5
HOH
HOH
1094
A
WAT
130
5
HOH
HOH
1095
A
WAT
131
5
HOH
HOH
1096
A
WAT
132
5
HOH
HOH
1097
A
WAT
134
5
HOH
HOH
1098
A
G
1
n
1
DG
1
D
A
2
n
2
DA
2
D
C
3
n
3
DC
3
D
A
4
n
4
DA
4
D
T
5
n
5
DT
5
D
G
6
n
6
DG
6
D
YRR
7
n
7
YRR
7
D
T
8
n
8
DT
8
D
T
9
n
9
DT
9
D
G
10
n
10
DG
10
D
C
11
n
11
DC
11
D
C
12
n
12
DC
12
D
T
13
n
13
DT
13
D
G
14
n
1
DG
14
E
G
15
n
2
DG
15
E
C
16
n
3
DC
16
E
A
17
n
4
DA
17
E
A
18
n
5
DA
18
E
T
19
n
6
DT
19
E
C
20
n
7
DC
20
E
A
21
n
8
DA
21
E
T
22
n
9
DT
22
E
G
23
n
10
DG
23
E
T
24
n
11
DT
24
E
C
25
n
12
DC
25
E
A
26
n
13
DA
26
E
LYS
80
n
1
LYS
80
A
GLY
81
n
2
GLY
81
A
HIS
82
n
3
HIS
82
A
LEU
83
n
4
LEU
83
A
THR
84
n
5
THR
84
A
ARG
85
n
6
ARG
85
A
LEU
86
n
7
LEU
86
A
GLY
87
n
8
GLY
87
A
LEU
88
n
9
LEU
88
A
GLU
89
n
10
GLU
89
A
PHE
90
n
11
PHE
90
A
PHE
91
n
12
PHE
91
A
ASP
92
n
13
ASP
92
A
GLN
93
n
14
GLN
93
A
PRO
94
n
15
PRO
94
A
ALA
95
n
16
ALA
95
A
VAL
96
n
17
VAL
96
A
PRO
97
n
18
PRO
97
A
LEU
98
n
19
LEU
98
A
ALA
99
n
20
ALA
99
A
ARG
100
n
21
ARG
100
A
ALA
101
n
22
ALA
101
A
PHE
102
n
23
PHE
102
A
LEU
103
n
24
LEU
103
A
GLY
104
n
25
GLY
104
A
GLN
105
n
26
GLN
105
A
VAL
106
n
27
VAL
106
A
LEU
107
n
28
LEU
107
A
VAL
108
n
29
VAL
108
A
ARG
109
n
30
ARG
109
A
ARG
110
n
31
ARG
110
A
LEU
111
n
32
LEU
111
A
PRO
112
n
33
PRO
112
A
ASN
113
n
34
ASN
113
A
GLY
114
n
35
GLY
114
A
THR
115
n
36
THR
115
A
GLU
116
n
37
GLU
116
A
LEU
117
n
38
LEU
117
A
ARG
118
n
39
ARG
118
A
GLY
119
n
40
GLY
119
A
ARG
120
n
41
ARG
120
A
ILE
121
n
42
ILE
121
A
VAL
122
n
43
VAL
122
A
GLU
123
n
44
GLU
123
A
THR
124
n
45
THR
124
A
GLU
125
n
46
GLU
125
A
ALA
126
n
47
ALA
126
A
TYR
127
n
48
TYR
127
A
LEU
128
n
49
LEU
128
A
GLY
129
n
50
GLY
129
A
PRO
130
n
51
PRO
130
A
GLU
131
n
52
GLU
131
A
ASP
132
n
53
ASP
132
A
GLU
133
n
54
GLU
133
A
ALA
134
n
55
ALA
134
A
ALA
135
n
56
ALA
135
A
HIS
136
n
57
HIS
136
A
SER
137
n
58
SER
137
A
ARG
138
n
59
ARG
138
A
GLY
139
n
60
GLY
139
A
GLY
140
n
61
GLY
140
A
ARG
141
n
62
ARG
141
A
GLN
142
n
63
GLN
142
A
THR
143
n
64
THR
143
A
PRO
144
n
65
PRO
144
A
ARG
145
n
66
ARG
145
A
ASN
146
n
67
ASN
146
A
ARG
147
n
68
ARG
147
A
GLY
148
n
69
GLY
148
A
MET
149
n
70
MET
149
A
PHE
150
n
71
PHE
150
A
MET
151
n
72
MET
151
A
LYS
152
n
73
LYS
152
A
PRO
153
n
74
PRO
153
A
GLY
154
n
75
GLY
154
A
THR
155
n
76
THR
155
A
LEU
156
n
77
LEU
156
A
TYR
157
n
78
TYR
157
A
VAL
158
n
79
VAL
158
A
TYR
159
n
80
TYR
159
A
ILE
160
n
81
ILE
160
A
ILE
161
n
82
ILE
161
A
TYR
162
n
83
TYR
162
A
GLY
163
n
84
GLY
163
A
MET
164
n
85
MET
164
A
TYR
165
n
86
TYR
165
A
PHE
166
n
87
PHE
166
A
CYS
167
n
88
CYS
167
A
MET
168
n
89
MET
168
A
ASN
169
n
90
ASN
169
A
ILE
170
n
91
ILE
170
A
SER
171
n
92
SER
171
A
SER
172
n
93
SER
172
A
GLN
173
n
94
GLN
173
A
GLY
174
n
95
GLY
174
A
ASP
175
n
96
ASP
175
A
GLY
176
n
97
GLY
176
A
ALA
177
n
98
ALA
177
A
CYS
178
n
99
CYS
178
A
VAL
179
n
100
VAL
179
A
LEU
180
n
101
LEU
180
A
LEU
181
n
102
LEU
181
A
ARG
182
n
103
ARG
182
A
ALA
183
n
104
ALA
183
A
LEU
184
n
105
LEU
184
A
GLU
185
n
106
GLU
185
A
PRO
186
n
107
PRO
186
A
LEU
187
n
108
LEU
187
A
GLU
188
n
109
GLU
188
A
GLY
189
n
110
GLY
189
A
LEU
190
n
111
LEU
190
A
GLU
191
n
112
GLU
191
A
THR
192
n
113
THR
192
A
MET
193
n
114
MET
193
A
ARG
194
n
115
ARG
194
A
GLN
195
n
116
GLN
195
A
LEU
196
n
117
LEU
196
A
ARG
197
n
118
ARG
197
A
SER
198
n
119
SER
198
A
THR
199
n
120
THR
199
A
LEU
200
n
121
LEU
200
A
n
122
201
A
n
123
202
A
n
124
203
A
n
125
204
A
n
126
205
A
SER
206
n
127
SER
206
A
ARG
207
n
128
ARG
207
A
VAL
208
n
129
VAL
208
A
LEU
209
n
130
LEU
209
A
LYS
210
n
131
LYS
210
A
ASP
211
n
132
ASP
211
A
ARG
212
n
133
ARG
212
A
GLU
213
n
134
GLU
213
A
LEU
214
n
135
LEU
214
A
CYS
215
n
136
CYS
215
A
SER
216
n
137
SER
216
A
GLY
217
n
138
GLY
217
A
PRO
218
n
139
PRO
218
A
SER
219
n
140
SER
219
A
LYS
220
n
141
LYS
220
A
LEU
221
n
142
LEU
221
A
CYS
222
n
143
CYS
222
A
GLN
223
n
144
GLN
223
A
ALA
224
n
145
ALA
224
A
LEU
225
n
146
LEU
225
A
ALA
226
n
147
ALA
226
A
ILE
227
n
148
ILE
227
A
ASN
228
n
149
ASN
228
A
LYS
229
n
150
LYS
229
A
SER
230
n
151
SER
230
A
PHE
231
n
152
PHE
231
A
ASP
232
n
153
ASP
232
A
GLN
233
n
154
GLN
233
A
ARG
234
n
155
ARG
234
A
ASP
235
n
156
ASP
235
A
LEU
236
n
157
LEU
236
A
ALA
237
n
158
ALA
237
A
GLN
238
n
159
GLN
238
A
ASP
239
n
160
ASP
239
A
GLU
240
n
161
GLU
240
A
ALA
241
n
162
ALA
241
A
VAL
242
n
163
VAL
242
A
TRP
243
n
164
TRP
243
A
LEU
244
n
165
LEU
244
A
GLU
245
n
166
GLU
245
A
ARG
246
n
167
ARG
246
A
GLY
247
n
168
GLY
247
A
PRO
248
n
169
PRO
248
A
LEU
249
n
170
LEU
249
A
GLU
250
n
171
GLU
250
A
PRO
251
n
172
PRO
251
A
SER
252
n
173
SER
252
A
GLU
253
n
174
GLU
253
A
PRO
254
n
175
PRO
254
A
ALA
255
n
176
ALA
255
A
VAL
256
n
177
VAL
256
A
VAL
257
n
178
VAL
257
A
ALA
258
n
179
ALA
258
A
ALA
259
n
180
ALA
259
A
ALA
260
n
181
ALA
260
A
ARG
261
n
182
ARG
261
A
VAL
262
n
183
VAL
262
A
GLY
263
n
184
GLY
263
A
VAL
264
n
185
VAL
264
A
GLY
265
n
186
GLY
265
A
HIS
266
n
187
HIS
266
A
ALA
267
n
188
ALA
267
A
GLY
268
n
189
GLY
268
A
GLU
269
n
190
GLU
269
A
TRP
270
n
191
TRP
270
A
ALA
271
n
192
ALA
271
A
ARG
272
n
193
ARG
272
A
LYS
273
n
194
LYS
273
A
PRO
274
n
195
PRO
274
A
LEU
275
n
196
LEU
275
A
ARG
276
n
197
ARG
276
A
PHE
277
n
198
PHE
277
A
TYR
278
n
199
TYR
278
A
VAL
279
n
200
VAL
279
A
ARG
280
n
201
ARG
280
A
GLY
281
n
202
GLY
281
A
SER
282
n
203
SER
282
A
PRO
283
n
204
PRO
283
A
TRP
284
n
205
TRP
284
A
VAL
285
n
206
VAL
285
A
SER
286
n
207
SER
286
A
VAL
287
n
208
VAL
287
A
VAL
288
n
209
VAL
288
A
ASP
289
n
210
ASP
289
A
ARG
290
n
211
ARG
290
A
VAL
291
n
212
VAL
291
A
ALA
292
n
213
ALA
292
A
GLU
293
n
214
GLU
293
A
GLN
294
n
215
GLN
294
A
ASP
295
n
216
ASP
295
A
n
217
296
A
n
218
297
A
n
219
298
A
author_defined_assembly
3
trimeric
A
MET
149
C
O
MET
70
1_555
A
NA
1001
D
NA
NA
1_555
A
SER
171
C
OG
SER
92
1_555
82.0
A
MET
149
C
O
MET
70
1_555
A
NA
1001
D
NA
NA
1_555
A
SER
172
C
O
SER
93
1_555
166.6
A
SER
171
C
OG
SER
92
1_555
A
NA
1001
D
NA
NA
1_555
A
SER
172
C
O
SER
93
1_555
84.6
A
MET
149
C
O
MET
70
1_555
A
NA
1001
D
NA
NA
1_555
A
GLY
174
C
O
GLY
95
1_555
98.8
A
SER
171
C
OG
SER
92
1_555
A
NA
1001
D
NA
NA
1_555
A
GLY
174
C
O
GLY
95
1_555
177.1
A
SER
172
C
O
SER
93
1_555
A
NA
1001
D
NA
NA
1_555
A
GLY
174
C
O
GLY
95
1_555
94.5
A
MET
149
C
O
MET
70
1_555
A
NA
1001
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
88.9
A
SER
171
C
OG
SER
92
1_555
A
NA
1001
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
91.1
A
SER
172
C
O
SER
93
1_555
A
NA
1001
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
90.1
A
GLY
174
C
O
GLY
95
1_555
A
NA
1001
D
NA
NA
1_555
A
ALA
177
C
O
ALA
98
1_555
86.1
A
MET
149
C
O
MET
70
1_555
A
NA
1001
D
NA
NA
1_555
A
HOH
1005
G
O
HOH
1_555
83.7
A
SER
171
C
OG
SER
92
1_555
A
NA
1001
D
NA
NA
1_555
A
HOH
1005
G
O
HOH
1_555
93.7
A
SER
172
C
O
SER
93
1_555
A
NA
1001
D
NA
NA
1_555
A
HOH
1005
G
O
HOH
1_555
98.5
A
GLY
174
C
O
GLY
95
1_555
A
NA
1001
D
NA
NA
1_555
A
HOH
1005
G
O
HOH
1_555
89.1
A
ALA
177
C
O
ALA
98
1_555
A
NA
1001
D
NA
NA
1_555
A
HOH
1005
G
O
HOH
1_555
170.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
161
C
N
ILE
82
A
O
TYR
165
C
O
TYR
86
A
O
ILE
170
C
O
ILE
91
A
N
VAL
179
C
N
VAL
100
A
N
LEU
187
C
N
LEU
108
A
O
ARG
118
C
O
ARG
39
A
O
GLY
119
C
O
GLY
40
A
N
LEU
107
C
N
LEU
28
A
N
VAL
108
C
N
VAL
29
A
O
TRP
243
C
O
TRP
164
A
N
ILE
161
C
N
ILE
82
A
O
TYR
165
C
O
TYR
86
A
O
ILE
170
C
O
ILE
91
A
N
VAL
179
C
N
VAL
100
A
N
LEU
187
C
N
LEU
108
A
O
ARG
118
C
O
ARG
39
A
N
THR
124
C
N
THR
45
A
O
PHE
277
C
O
PHE
198
A
O
TYR
278
C
O
TYR
199
A
N
VAL
257
C
N
VAL
178
1
A
CG
ARG
207
C
CG
ARG
128
1
Y
1
A
CD
ARG
207
C
CD
ARG
128
1
Y
1
A
NE
ARG
207
C
NE
ARG
128
1
Y
1
A
CZ
ARG
207
C
CZ
ARG
128
1
Y
1
A
NH1
ARG
207
C
NH1
ARG
128
1
Y
1
A
NH2
ARG
207
C
NH2
ARG
128
1
Y
1
A
CG
LYS
210
C
CG
LYS
131
1
Y
1
A
CD
LYS
210
C
CD
LYS
131
1
Y
1
A
CE
LYS
210
C
CE
LYS
131
1
Y
1
A
NZ
LYS
210
C
NZ
LYS
131
1
Y
1
A
CG
GLN
294
C
CG
GLN
215
1
Y
1
A
CD
GLN
294
C
CD
GLN
215
1
Y
1
A
OE1
GLN
294
C
OE1
GLN
215
1
Y
1
A
NE2
GLN
294
C
NE2
GLN
215
1
Y
1
A
ARG
201
C
ARG
122
1
Y
1
A
LYS
202
C
LYS
123
1
Y
1
A
GLY
203
C
GLY
124
1
Y
1
A
THR
204
C
THR
125
1
Y
1
A
ALA
205
C
ALA
126
1
Y
1
A
THR
296
C
THR
217
1
Y
1
A
GLN
297
C
GLN
218
1
Y
1
A
ALA
298
C
ALA
219
1
Y
1
A
A
NH2
O
ARG
VAL
276
287
2.19
1
11.20
1.50
119.30
130.50
A
A
A
C
N
CA
GLU
PRO
PRO
250
251
251
Y
1
A
MET
164
-161.12
-5.95
1
A
ARG
207
94.86
110.67
1
A
GLU
250
78.42
113.33
1
A
PRO
251
-82.00
39.43
1
A
SER
252
168.19
109.21
1
A
GLN
294
-97.49
53.55
Used Powell conjugate gradient minimization and torsion angle-restrained
molecular dynamics
0.2820000
0.2190000
2.4
500
1166
13118
11332
10.3
86.4
Random
1
THROUGHOUT
4.0
2.0
Engh & Huber
2.4
500
134
2290
1
517
1638
0.006
1.20
41.8
2.4
500
1F6O
13118
11332
2.0
0.0710000
1
21.5
8.0
86.4
0.2530000
2.40
2.53
1643
6.0
75.6
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
GLY
81
C
GLY
2
HELX_P
A
THR
84
C
THR
5
5
1
4
A
GLY
87
C
GLY
8
HELX_P
A
ASP
92
C
ASP
13
1
2
6
A
PRO
94
C
PRO
15
HELX_P
A
PHE
102
C
PHE
23
1
3
9
A
SER
137
C
SER
58
HELX_P
A
ARG
141
C
ARG
62
5
4
5
A
ASN
146
C
ASN
67
HELX_P
A
MET
151
C
MET
72
5
5
6
A
GLY
189
C
GLY
110
HELX_P
A
LEU
200
C
LEU
121
1
6
12
A
LYS
210
C
LYS
131
HELX_P
A
LEU
214
C
LEU
135
5
7
5
A
GLY
217
C
GLY
138
HELX_P
A
LEU
225
C
LEU
146
1
8
9
A
ASN
228
C
ASN
149
HELX_P
A
ASP
232
C
ASP
153
5
9
5
A
VAL
264
C
VAL
185
HELX_P
A
GLY
268
C
GLY
189
5
10
5
A
ALA
267
C
ALA
188
HELX_P
A
LYS
273
C
LYS
194
5
11
7
A
ASP
289
C
ASP
210
HELX_P
A
GLN
294
C
GLN
215
1
12
6
covale
1.596
both
D
DG
6
A
O3'
DG
6
1_555
D
YRR
7
A
P
YRR
7
1_555
covale
1.599
both
D
YRR
7
A
O3'
YRR
7
1_555
D
DT
8
A
P
DT
8
1_555
metalc
2.665
A
MET
149
C
O
MET
70
1_555
A
NA
1001
D
NA
NA
1_555
metalc
2.622
A
SER
171
C
OG
SER
92
1_555
A
NA
1001
D
NA
NA
1_555
metalc
2.513
A
SER
172
C
O
SER
93
1_555
A
NA
1001
D
NA
NA
1_555
metalc
2.702
A
GLY
174
C
O
GLY
95
1_555
A
NA
1001
D
NA
NA
1_555
metalc
2.723
A
ALA
177
C
O
ALA
98
1_555
A
NA
1001
D
NA
NA
1_555
metalc
2.873
A
NA
1001
D
NA
NA
1_555
A
HOH
1005
G
O
HOH
1_555
hydrog
WATSON-CRICK
D
DG
1
A
N1
DG
1
1_555
E
DC
25
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
D
DG
1
A
N2
DG
1
1_555
E
DC
25
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
D
DG
1
A
O6
DG
1
1_555
E
DC
25
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
D
DA
2
A
N1
DA
2
1_555
E
DT
24
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
D
DA
2
A
N6
DA
2
1_555
E
DT
24
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
D
DC
3
A
N3
DC
3
1_555
E
DG
23
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
D
DC
3
A
N4
DC
3
1_555
E
DG
23
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
D
DC
3
A
O2
DC
3
1_555
E
DG
23
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N1
DA
4
1_555
E
DT
22
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
D
DA
4
A
N6
DA
4
1_555
E
DT
22
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
D
DT
5
A
N3
DT
5
1_555
E
DA
21
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
D
DT
5
A
O4
DT
5
1_555
E
DA
21
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
D
DG
6
A
N1
DG
6
1_555
E
DC
20
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
6
A
N2
DG
6
1_555
E
DC
20
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
D
DG
6
A
O6
DG
6
1_555
E
DC
20
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
D
DT
8
A
N3
DT
8
1_555
E
DA
18
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
D
DT
8
A
O4
DT
8
1_555
E
DA
18
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
D
DT
9
A
N3
DT
9
1_555
E
DA
17
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
D
DT
9
A
O4
DT
9
1_555
E
DA
17
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N1
DG
10
1_555
E
DC
16
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
D
DG
10
A
N2
DG
10
1_555
E
DC
16
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
D
DG
10
A
O6
DG
10
1_555
E
DC
16
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N3
DC
11
1_555
E
DG
15
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
D
DC
11
A
N4
DC
11
1_555
E
DG
15
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
D
DC
11
A
O2
DC
11
1_555
E
DG
15
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
D
DC
12
A
N3
DC
12
1_555
E
DG
14
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
12
A
N4
DC
12
1_555
E
DG
14
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
12
A
O2
DC
12
1_555
E
DG
14
B
N2
DG
1
1_555
HYDROLASE/DNA
Protein-DNA Complex, AAG DNA repair glycosylase, HYDROLASE-DNA COMPLEX
3MG_HUMAN
UNP
3
80
P29372
1F6O
PDB
1
1F6O
1F6O
PDB
2
1F6O
80
298
1F6O
80
298
P29372
A
1
1
219
1
13
1F6O
1
13
1F6O
D
2
1
13
14
26
1F6O
14
26
1F6O
E
3
1
13
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
156
C
LEU
77
A
ILE
161
C
ILE
82
A
TYR
165
C
TYR
86
A
SER
171
C
SER
92
A
CYS
178
C
CYS
99
A
GLU
188
C
GLU
109
A
GLU
116
C
GLU
37
A
TYR
127
C
TYR
48
A
VAL
106
C
VAL
27
A
ARG
110
C
ARG
31
A
VAL
242
C
VAL
163
A
GLU
245
C
GLU
166
A
LEU
156
C
LEU
77
A
ILE
161
C
ILE
82
A
TYR
165
C
TYR
86
A
SER
171
C
SER
92
A
CYS
178
C
CYS
99
A
GLU
188
C
GLU
109
A
GLU
116
C
GLU
37
A
TYR
127
C
TYR
48
A
ARG
276
C
ARG
197
A
VAL
279
C
VAL
200
A
VAL
256
C
VAL
177
A
ALA
259
C
ALA
180
BINDING SITE FOR RESIDUE NA A 1001
A
NA
1001
Software
6
A
MET
149
C
MET
70
6
1_555
A
SER
171
C
SER
92
6
1_555
A
SER
172
C
SER
93
6
1_555
A
GLY
174
C
GLY
95
6
1_555
A
ALA
177
C
ALA
98
6
1_555
A
HOH
1005
G
HOH
6
1_555
19
orthorhombic
P 21 21 21