1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kao, Y.-H. Lee, G.F. Wang, Y. Starovasnik, M.A. Kelley, R.F. Spellman, M.W. Lerner, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C Y 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C Y 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C N 255 N C N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N O N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 R C N 286 N O N 287 N C N 288 N O N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing Y 227 N doub Y 228 N sing Y 229 N sing N 230 N sing Y 231 N doub N 232 N sing Y 233 N doub N 234 N sing Y 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing N 299 N sing Y 300 N doub N 301 N sing Y 302 N doub N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing US Biochemistry BICHAW 0033 0006-2960 38 7097 7110 10.1021/bi990234z 10353820 The effect of O-fucosylation on the first EGF-like domain from human blood coagulation factor VII. 1999 10.2210/pdb1f7e/pdb pdb_00001f7e 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 CALCIUM BOUND FORM 4878.247 PROTEIN (Blood Coagulation Factor VII) FIRST EGF-LIKE DOMAIN (RESIDUES 45-87) 1 man polymer no no SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection 1 0 1999-06-16 1 1 2008-04-26 1 2 2011-07-13 1 3 2022-02-16 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name BNL Y RCSB 1999-02-19 REL REL DETAILS ARE INCLUDED IN THE PUBLICATION. LEAST RESTRAINT VIOLATION AND LOWEST XPLOR ENERGY 100 20 DQF-COSY 2Q TOCSY NOESY 1H-15N HSQC 3D 1H-15N NOESY-HSQC 3D 1H-15N TOCSY-HSQC 400mM 5.5 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. HYBRID DISTANCE GEOMETRY - SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.851 structure solution Felix structure solution X-PLOR 500 Varian INOVA 500 SER 45 n 1 SER 45 A ASP 46 n 2 ASP 46 A GLY 47 n 3 GLY 47 A ASP 48 n 4 ASP 48 A GLN 49 n 5 GLN 49 A CYS 50 n 6 CYS 50 A ALA 51 n 7 ALA 51 A SER 52 n 8 SER 52 A SER 53 n 9 SER 53 A PRO 54 n 10 PRO 54 A CYS 55 n 11 CYS 55 A GLN 56 n 12 GLN 56 A ASN 57 n 13 ASN 57 A GLY 58 n 14 GLY 58 A GLY 59 n 15 GLY 59 A SER 60 n 16 SER 60 A CYS 61 n 17 CYS 61 A LYS 62 n 18 LYS 62 A ASP 63 n 19 ASP 63 A GLN 64 n 20 GLN 64 A LEU 65 n 21 LEU 65 A GLN 66 n 22 GLN 66 A SER 67 n 23 SER 67 A TYR 68 n 24 TYR 68 A ILE 69 n 25 ILE 69 A CYS 70 n 26 CYS 70 A PHE 71 n 27 PHE 71 A CYS 72 n 28 CYS 72 A LEU 73 n 29 LEU 73 A PRO 74 n 30 PRO 74 A ALA 75 n 31 ALA 75 A PHE 76 n 32 PHE 76 A GLU 77 n 33 GLU 77 A GLY 78 n 34 GLY 78 A ARG 79 n 35 ARG 79 A ASN 80 n 36 ASN 80 A CYS 81 n 37 CYS 81 A GLU 82 n 38 GLU 82 A THR 83 n 39 THR 83 A HIS 84 n 40 HIS 84 A LYS 85 n 41 LYS 85 A ASP 86 n 42 ASP 86 A ASP 87 n 43 ASP 87 A GLY 88 n 44 GLY 88 A SER 89 n 45 SER 89 A ALA 90 n 46 ALA 90 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ASP 46 -163.47 53.44 1 A LEU 65 53.91 97.29 1 A GLN 66 62.94 -77.29 1 A SER 67 -62.07 -165.99 1 A PHE 71 -102.48 66.77 1 A SER 89 55.58 -86.63 2 A ASP 46 -91.55 48.71 2 A CYS 50 -93.66 49.68 2 A SER 53 51.19 72.51 2 A LEU 65 53.84 100.91 2 A ASP 86 -92.65 44.74 2 A ASP 87 -168.41 -71.80 2 A SER 89 -167.72 108.78 3 A ASP 46 -156.74 -64.17 3 A CYS 50 -91.45 48.73 3 A SER 53 51.18 80.79 3 A LEU 65 61.40 151.17 3 A GLN 66 60.38 -80.54 3 A SER 67 -109.84 -156.56 3 A CYS 72 -66.85 -171.86 3 A ASP 87 52.84 -172.48 4 A ASP 46 -167.11 84.86 4 A CYS 50 -96.95 30.43 4 A SER 53 50.69 71.03 4 A LEU 65 55.63 104.33 5 A CYS 50 -100.16 51.88 5 A SER 53 51.49 80.87 5 A LEU 65 53.88 -156.73 5 A PHE 71 -107.26 68.68 6 A ASP 46 -91.71 48.53 6 A CYS 50 -93.15 46.04 6 A SER 53 46.53 72.75 6 A LEU 65 60.59 152.20 6 A GLN 66 58.99 -82.27 6 A SER 67 -112.80 -154.79 7 A GLN 56 -122.42 -151.52 7 A GLN 64 -110.10 -168.58 7 A ASP 87 52.85 -179.61 8 A CYS 50 -91.76 48.01 8 A SER 53 51.67 81.81 8 A GLN 64 -112.67 55.38 8 A LEU 65 58.27 110.54 8 A GLN 66 65.30 -73.53 9 A CYS 50 -91.81 49.51 9 A SER 53 51.09 77.46 9 A GLN 64 -102.75 -168.94 9 A SER 67 -169.06 -167.19 9 A CYS 72 -108.61 -166.75 9 A LYS 85 -60.88 -171.25 9 A ASP 86 63.09 -69.27 10 A ASP 46 -155.34 49.52 10 A CYS 50 -102.54 53.66 10 A SER 53 51.55 79.45 10 A LEU 65 62.16 145.21 10 A GLN 66 60.76 -80.25 10 A SER 67 -104.28 -158.48 10 A PHE 71 -104.38 70.12 10 A SER 89 -166.69 -71.99 11 A SER 53 51.62 81.34 11 A GLN 56 -118.98 -153.34 11 A GLN 66 67.37 -62.82 11 A SER 67 -141.40 -157.85 11 A ASP 87 -159.75 -60.58 12 A CYS 50 -92.09 47.28 12 A SER 53 46.20 74.64 12 A LEU 65 57.32 -84.87 12 A SER 67 -117.19 -154.37 12 A PHE 71 -102.61 73.48 12 A ASP 86 -159.02 54.43 13 A ASP 46 -152.91 50.79 13 A ASP 48 -108.65 49.83 13 A CYS 50 -112.58 50.33 13 A SER 53 46.22 76.34 13 A GLN 56 -115.14 -163.52 13 A GLN 64 -103.90 47.50 13 A LEU 65 57.60 -84.28 13 A SER 67 -123.15 -162.64 14 A ASP 48 -99.95 44.81 14 A CYS 50 -107.98 50.84 14 A SER 53 50.65 82.29 14 A GLN 64 -108.08 50.88 14 A LEU 65 56.53 -85.77 14 A GLN 66 -60.10 -75.05 14 A SER 67 -112.38 -165.45 14 A ASP 87 -161.21 -165.55 15 A ASP 48 -118.89 50.15 15 A CYS 50 -92.40 48.02 15 A SER 53 51.99 77.43 15 A GLN 56 -104.69 -161.68 15 A GLN 64 -117.69 62.49 15 A LEU 65 55.16 103.95 15 A GLN 66 66.34 -69.79 15 A CYS 72 -111.95 -166.16 15 A ASP 86 -154.61 45.75 15 A ASP 87 52.85 -171.69 16 A CYS 50 -104.77 55.83 16 A SER 53 51.29 83.72 16 A LEU 65 61.11 153.24 16 A GLN 66 59.96 -81.18 16 A SER 67 -111.77 -156.75 17 A ASP 48 -98.67 30.25 17 A CYS 50 -110.42 57.81 17 A SER 53 50.91 81.02 17 A GLN 64 -100.44 45.82 17 A LEU 65 58.36 -83.79 17 A GLN 66 -60.63 -71.28 17 A SER 67 -114.35 -164.18 17 A CYS 72 -103.87 -167.53 17 A ASP 87 55.57 -86.60 18 A ASP 46 -96.90 -64.27 18 A LEU 65 61.64 151.38 18 A GLN 66 60.08 -81.14 18 A SER 67 -111.82 -157.23 19 A ASP 48 -98.88 45.95 19 A CYS 50 -94.67 42.76 19 A LEU 65 56.51 -86.12 19 A GLN 66 -106.22 -62.67 19 A SER 67 -73.80 -161.51 19 A PHE 71 -101.93 65.55 19 A ASP 87 -115.37 -70.54 19 A SER 89 -97.29 -66.90 20 A CYS 50 -96.42 31.89 20 A SER 52 -150.35 20.01 20 A LEU 65 57.41 -84.91 20 A SER 67 -82.30 -156.87 THE FIRST EGF-LIKE DOMAIN FROM HUMAN BLOOD COAGULATION FVII, NMR, 20 STRUCTURES 1 N N disulf 2.021 A CYS 50 A SG CYS 6 1_555 A CYS 61 A SG CYS 17 1_555 disulf 2.020 A CYS 55 A SG CYS 11 1_555 A CYS 70 A SG CYS 26 1_555 disulf 2.017 A CYS 72 A SG CYS 28 1_555 A CYS 81 A SG CYS 37 1_555 BLOOD CLOTTING FACTOR VII, BLOOD COAGULATION, EGF-LIKE DOMAIN, BLOOD CLOTTING FA7_HUMAN UNP 1 P08709 83 125 1F7E 45 87 P08709 A 1 1 43 1 SEE REMARK 999 GLY 88 1F7E A P08709 UNP 44 1 SEE REMARK 999 SER 89 1F7E A P08709 UNP 45 1 SEE REMARK 999 ALA 90 1F7E A P08709 UNP 46 2 2 anti-parallel anti-parallel A SER 60 A SER 16 A ASP 63 A ASP 19 A TYR 68 A TYR 24 A PHE 71 A PHE 27 A PHE 76 A PHE 32 A GLU 77 A GLU 33 A THR 83 A THR 39 A HIS 84 A HIS 40 1 P 1