0.012637
0.007296
0.000000
0.000000
0.014592
0.000000
0.000000
0.000000
0.011467
0.00000
0.00000
0.00000
Prasad, G.S.
Stura, E.A.
Elder, J.H.
Stout, C.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.0
90.0
120.0
79.13
79.13
87.21
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O8 P
308.182
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
N
C
N
375
N
N
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
O
N
381
R
C
N
382
N
C
N
383
S
C
N
384
R
C
N
385
N
O
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
P
N
390
N
O
N
391
N
O
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
1100
1109
10.1107/S0907444900009197
10957629
Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms.
2000
US
Protein Sci.
PRCIEI
0795
0961-8368
5
2429
2437
Crystal Structure of dUTP Pyrophosphatase from Feline Immunodeficiency Virus
1996
10.2210/pdb1f7k/pdb
pdb_00001f7k
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
IMAGE PLATE
1998-12-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
14730.169
POL POLYPROTEIN
3.6.1.23
DUTPASE
2
man
polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
308.182
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
2
syn
non-polymer
18.015
water
132
nat
water
no
no
MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV
IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSW
MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV
IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSW
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
cabbage looper
Trichoplusia
sample
11673
Feline immunodeficiency virus
7111
Trichoplusia ni
BACULOVIRUS
FIV-34TF10
1
2.67
54.01
VAPOR DIFFUSION, SITTING DROP
6.5
13% MPEG 5K, 50 mM cacodylate and
the crystals were soaked in 5 mM dUMP overnight, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2000-09-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1F7D contains the same protein in P63
1F7N contains the same protein complexed with dUMP in P63
1F7O contains the same protein in P212121
1F7P contains the same protein in complex with dUDP in P212121
1F7Q contains the same protein in complex with dUTP in P212121
1F7R contains the same protein in complex with dUDP in P213
RCSB
Y
RCSB
2000-06-27
REL
MG
MAGNESIUM ION
UMP
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
HOH
water
MG
701
2
MG
MG
701
A
MG
703
2
MG
MG
703
A
UMP
118
3
UMP
UMP
704
A
MG
702
2
MG
MG
702
B
UMP
318
3
UMP
UMP
703
B
H2O
401
4
HOH
HOH
401
A
H2O
402
4
HOH
HOH
402
A
H2O
403
4
HOH
HOH
403
A
H2O
404
4
HOH
HOH
404
A
H2O
405
4
HOH
HOH
405
A
H2O
406
4
HOH
HOH
406
A
H2O
407
4
HOH
HOH
407
A
H2O
408
4
HOH
HOH
408
A
H2O
410
4
HOH
HOH
410
A
H2O
412
4
HOH
HOH
412
A
H2O
413
4
HOH
HOH
413
A
H2O
415
4
HOH
HOH
415
A
H2O
416
4
HOH
HOH
416
A
H2O
417
4
HOH
HOH
417
A
H2O
418
4
HOH
HOH
418
A
H2O
419
4
HOH
HOH
419
A
H2O
420
4
HOH
HOH
420
A
H2O
421
4
HOH
HOH
421
A
H2O
424
4
HOH
HOH
424
A
H2O
425
4
HOH
HOH
425
A
H2O
426
4
HOH
HOH
426
A
H2O
427
4
HOH
HOH
427
A
H2O
429
4
HOH
HOH
429
A
H2O
432
4
HOH
HOH
432
A
H2O
433
4
HOH
HOH
433
A
H2O
434
4
HOH
HOH
434
A
H2O
436
4
HOH
HOH
436
A
H2O
437
4
HOH
HOH
437
A
H2O
439
4
HOH
HOH
439
A
H2O
440
4
HOH
HOH
440
A
H2O
442
4
HOH
HOH
442
A
H2O
444
4
HOH
HOH
444
A
H2O
445
4
HOH
HOH
445
A
H2O
447
4
HOH
HOH
447
A
H2O
448
4
HOH
HOH
448
A
H2O
449
4
HOH
HOH
449
A
H2O
451
4
HOH
HOH
451
A
H2O
452
4
HOH
HOH
452
A
H2O
453
4
HOH
HOH
453
A
H2O
454
4
HOH
HOH
454
A
H2O
455
4
HOH
HOH
455
A
H2O
456
4
HOH
HOH
456
A
H2O
458
4
HOH
HOH
458
A
H2O
459
4
HOH
HOH
459
A
H2O
460
4
HOH
HOH
460
A
H2O
461
4
HOH
HOH
461
A
H2O
462
4
HOH
HOH
462
A
H2O
464
4
HOH
HOH
464
A
H2O
465
4
HOH
HOH
465
A
H2O
466
4
HOH
HOH
466
A
H2O
468
4
HOH
HOH
468
A
H2O
469
4
HOH
HOH
469
A
H2O
471
4
HOH
HOH
471
A
H2O
472
4
HOH
HOH
472
A
H2O
473
4
HOH
HOH
473
A
H2O
474
4
HOH
HOH
474
A
H2O
475
4
HOH
HOH
475
A
H2O
477
4
HOH
HOH
477
A
H2O
479
4
HOH
HOH
479
A
H2O
481
4
HOH
HOH
481
A
H2O
482
4
HOH
HOH
482
A
H2O
484
4
HOH
HOH
484
A
H2O
486
4
HOH
HOH
486
A
H2O
487
4
HOH
HOH
487
A
H2O
488
4
HOH
HOH
488
A
H2O
489
4
HOH
HOH
489
A
H2O
490
4
HOH
HOH
490
A
H2O
492
4
HOH
HOH
492
A
H2O
493
4
HOH
HOH
493
A
H2O
494
4
HOH
HOH
494
A
H2O
495
4
HOH
HOH
495
A
H2O
497
4
HOH
HOH
497
A
H2O
498
4
HOH
HOH
498
A
H2O
499
4
HOH
HOH
499
A
H2O
500
4
HOH
HOH
500
A
H2O
501
4
HOH
HOH
501
A
H2O
502
4
HOH
HOH
502
A
H2O
505
4
HOH
HOH
505
A
H2O
506
4
HOH
HOH
506
A
H2O
510
4
HOH
HOH
510
A
H2O
511
4
HOH
HOH
511
A
H2O
513
4
HOH
HOH
513
A
H2O
514
4
HOH
HOH
514
A
H2O
515
4
HOH
HOH
515
A
H2O
516
4
HOH
HOH
516
A
H2O
517
4
HOH
HOH
517
A
H2O
518
4
HOH
HOH
518
A
H2O
520
4
HOH
HOH
520
A
H2O
521
4
HOH
HOH
521
A
H2O
522
4
HOH
HOH
522
A
H2O
524
4
HOH
HOH
524
A
H2O
526
4
HOH
HOH
526
A
H2O
527
4
HOH
HOH
527
A
H2O
601
4
HOH
HOH
601
A
H2O
602
4
HOH
HOH
602
A
H2O
603
4
HOH
HOH
603
A
H2O
409
4
HOH
HOH
409
B
H2O
411
4
HOH
HOH
411
B
H2O
414
4
HOH
HOH
414
B
H2O
422
4
HOH
HOH
422
B
H2O
423
4
HOH
HOH
423
B
H2O
428
4
HOH
HOH
428
B
H2O
430
4
HOH
HOH
430
B
H2O
431
4
HOH
HOH
431
B
H2O
435
4
HOH
HOH
435
B
H2O
438
4
HOH
HOH
438
B
H2O
441
4
HOH
HOH
441
B
H2O
443
4
HOH
HOH
443
B
H2O
446
4
HOH
HOH
446
B
H2O
450
4
HOH
HOH
450
B
H2O
457
4
HOH
HOH
457
B
H2O
463
4
HOH
HOH
463
B
H2O
467
4
HOH
HOH
467
B
H2O
470
4
HOH
HOH
470
B
H2O
476
4
HOH
HOH
476
B
H2O
478
4
HOH
HOH
478
B
H2O
480
4
HOH
HOH
480
B
H2O
483
4
HOH
HOH
483
B
H2O
485
4
HOH
HOH
485
B
H2O
491
4
HOH
HOH
491
B
H2O
496
4
HOH
HOH
496
B
H2O
503
4
HOH
HOH
503
B
H2O
504
4
HOH
HOH
504
B
H2O
507
4
HOH
HOH
507
B
H2O
508
4
HOH
HOH
508
B
H2O
509
4
HOH
HOH
509
B
H2O
512
4
HOH
HOH
512
B
H2O
519
4
HOH
HOH
519
B
H2O
523
4
HOH
HOH
523
B
H2O
525
4
HOH
HOH
525
B
H2O
604
4
HOH
HOH
604
B
H2O
605
4
HOH
HOH
605
B
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
ILE
3
n
3
ILE
3
A
GLU
4
n
4
GLU
4
A
GLY
5
n
5
GLY
5
A
ASP
6
n
6
ASP
6
A
GLY
7
n
7
GLY
7
A
ILE
8
n
8
ILE
8
A
LEU
9
n
9
LEU
9
A
ASP
10
n
10
ASP
10
A
LYS
11
n
11
LYS
11
A
ARG
12
n
12
ARG
12
A
SER
13
n
13
SER
13
A
GLU
14
n
14
GLU
14
A
ASP
15
n
15
ASP
15
A
ALA
16
n
16
ALA
16
A
GLY
17
n
17
GLY
17
A
TYR
18
n
18
TYR
18
A
ASP
19
n
19
ASP
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
ALA
22
n
22
ALA
22
A
ALA
23
n
23
ALA
23
A
LYS
24
n
24
LYS
24
A
GLU
25
n
25
GLU
25
A
ILE
26
n
26
ILE
26
A
HIS
27
n
27
HIS
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
PRO
30
n
30
PRO
30
A
GLY
31
n
31
GLY
31
A
GLU
32
n
32
GLU
32
A
VAL
33
n
33
VAL
33
A
LYS
34
n
34
LYS
34
A
VAL
35
n
35
VAL
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
THR
38
n
38
THR
38
A
GLY
39
n
39
GLY
39
A
VAL
40
n
40
VAL
40
A
LYS
41
n
41
LYS
41
A
LEU
42
n
42
LEU
42
A
MET
43
n
43
MET
43
A
LEU
44
n
44
LEU
44
A
PRO
45
n
45
PRO
45
A
LYS
46
n
46
LYS
46
A
GLY
47
n
47
GLY
47
A
TYR
48
n
48
TYR
48
A
TRP
49
n
49
TRP
49
A
GLY
50
n
50
GLY
50
A
LEU
51
n
51
LEU
51
A
ILE
52
n
52
ILE
52
A
ILE
53
n
53
ILE
53
A
GLY
54
n
54
GLY
54
A
LYS
55
n
55
LYS
55
A
SER
56
n
56
SER
56
A
SER
57
n
57
SER
57
A
ILE
58
n
58
ILE
58
A
GLY
59
n
59
GLY
59
A
SER
60
n
60
SER
60
A
LYS
61
n
61
LYS
61
A
GLY
62
n
62
GLY
62
A
LEU
63
n
63
LEU
63
A
ASP
64
n
64
ASP
64
A
VAL
65
n
65
VAL
65
A
LEU
66
n
66
LEU
66
A
GLY
67
n
67
GLY
67
A
GLY
68
n
68
GLY
68
A
VAL
69
n
69
VAL
69
A
ILE
70
n
70
ILE
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
GLY
73
n
73
GLY
73
A
TYR
74
n
74
TYR
74
A
ARG
75
n
75
ARG
75
A
GLY
76
n
76
GLY
76
A
GLU
77
n
77
GLU
77
A
ILE
78
n
78
ILE
78
A
GLY
79
n
79
GLY
79
A
VAL
80
n
80
VAL
80
A
ILE
81
n
81
ILE
81
A
MET
82
n
82
MET
82
A
ILE
83
n
83
ILE
83
A
ASN
84
n
84
ASN
84
A
VAL
85
n
85
VAL
85
A
SER
86
n
86
SER
86
A
ARG
87
n
87
ARG
87
A
LYS
88
n
88
LYS
88
A
SER
89
n
89
SER
89
A
ILE
90
n
90
ILE
90
A
THR
91
n
91
THR
91
A
LEU
92
n
92
LEU
92
A
MET
93
n
93
MET
93
A
GLU
94
n
94
GLU
94
A
ARG
95
n
95
ARG
95
A
GLN
96
n
96
GLN
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
ALA
99
n
99
ALA
99
A
GLN
100
n
100
GLN
100
A
LEU
101
n
101
LEU
101
A
ILE
102
n
102
ILE
102
A
ILE
103
n
103
ILE
103
A
LEU
104
n
104
LEU
104
A
PRO
105
n
105
PRO
105
A
CYS
106
n
106
CYS
106
A
LYS
107
n
107
LYS
107
A
HIS
108
n
108
HIS
108
A
GLU
109
n
109
GLU
109
A
VAL
110
n
110
VAL
110
A
LEU
111
n
111
LEU
111
A
GLU
112
n
112
GLU
112
A
GLN
113
n
113
GLN
113
A
GLY
114
n
114
GLY
114
A
LYS
115
n
115
LYS
115
A
VAL
116
n
116
VAL
116
A
VAL
117
n
117
VAL
117
A
n
118
118
A
n
119
119
A
n
120
120
A
n
121
121
A
n
122
122
A
n
123
123
A
n
124
124
A
n
125
125
A
n
126
126
A
n
127
127
A
n
128
128
A
n
129
129
A
n
130
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
n
135
135
A
n
136
136
A
MET
201
n
1
MET
201
B
ILE
202
n
2
ILE
202
B
ILE
203
n
3
ILE
203
B
GLU
204
n
4
GLU
204
B
GLY
205
n
5
GLY
205
B
ASP
206
n
6
ASP
206
B
GLY
207
n
7
GLY
207
B
ILE
208
n
8
ILE
208
B
LEU
209
n
9
LEU
209
B
ASP
210
n
10
ASP
210
B
LYS
211
n
11
LYS
211
B
ARG
212
n
12
ARG
212
B
SER
213
n
13
SER
213
B
GLU
214
n
14
GLU
214
B
ASP
215
n
15
ASP
215
B
ALA
216
n
16
ALA
216
B
GLY
217
n
17
GLY
217
B
TYR
218
n
18
TYR
218
B
ASP
219
n
19
ASP
219
B
LEU
220
n
20
LEU
220
B
LEU
221
n
21
LEU
221
B
ALA
222
n
22
ALA
222
B
ALA
223
n
23
ALA
223
B
LYS
224
n
24
LYS
224
B
GLU
225
n
25
GLU
225
B
ILE
226
n
26
ILE
226
B
HIS
227
n
27
HIS
227
B
LEU
228
n
28
LEU
228
B
LEU
229
n
29
LEU
229
B
PRO
230
n
30
PRO
230
B
GLY
231
n
31
GLY
231
B
GLU
232
n
32
GLU
232
B
VAL
233
n
33
VAL
233
B
LYS
234
n
34
LYS
234
B
VAL
235
n
35
VAL
235
B
ILE
236
n
36
ILE
236
B
PRO
237
n
37
PRO
237
B
THR
238
n
38
THR
238
B
GLY
239
n
39
GLY
239
B
VAL
240
n
40
VAL
240
B
LYS
241
n
41
LYS
241
B
LEU
242
n
42
LEU
242
B
MET
243
n
43
MET
243
B
LEU
244
n
44
LEU
244
B
PRO
245
n
45
PRO
245
B
LYS
246
n
46
LYS
246
B
GLY
247
n
47
GLY
247
B
TYR
248
n
48
TYR
248
B
TRP
249
n
49
TRP
249
B
GLY
250
n
50
GLY
250
B
LEU
251
n
51
LEU
251
B
ILE
252
n
52
ILE
252
B
ILE
253
n
53
ILE
253
B
GLY
254
n
54
GLY
254
B
LYS
255
n
55
LYS
255
B
SER
256
n
56
SER
256
B
SER
257
n
57
SER
257
B
ILE
258
n
58
ILE
258
B
GLY
259
n
59
GLY
259
B
SER
260
n
60
SER
260
B
LYS
261
n
61
LYS
261
B
GLY
262
n
62
GLY
262
B
LEU
263
n
63
LEU
263
B
ASP
264
n
64
ASP
264
B
VAL
265
n
65
VAL
265
B
LEU
266
n
66
LEU
266
B
GLY
267
n
67
GLY
267
B
GLY
268
n
68
GLY
268
B
VAL
269
n
69
VAL
269
B
ILE
270
n
70
ILE
270
B
ASP
271
n
71
ASP
271
B
GLU
272
n
72
GLU
272
B
GLY
273
n
73
GLY
273
B
TYR
274
n
74
TYR
274
B
ARG
275
n
75
ARG
275
B
GLY
276
n
76
GLY
276
B
GLU
277
n
77
GLU
277
B
ILE
278
n
78
ILE
278
B
GLY
279
n
79
GLY
279
B
VAL
280
n
80
VAL
280
B
ILE
281
n
81
ILE
281
B
MET
282
n
82
MET
282
B
ILE
283
n
83
ILE
283
B
ASN
284
n
84
ASN
284
B
VAL
285
n
85
VAL
285
B
SER
286
n
86
SER
286
B
ARG
287
n
87
ARG
287
B
LYS
288
n
88
LYS
288
B
SER
289
n
89
SER
289
B
ILE
290
n
90
ILE
290
B
THR
291
n
91
THR
291
B
LEU
292
n
92
LEU
292
B
MET
293
n
93
MET
293
B
GLU
294
n
94
GLU
294
B
ARG
295
n
95
ARG
295
B
GLN
296
n
96
GLN
296
B
LYS
297
n
97
LYS
297
B
ILE
298
n
98
ILE
298
B
ALA
299
n
99
ALA
299
B
GLN
300
n
100
GLN
300
B
LEU
301
n
101
LEU
301
B
ILE
302
n
102
ILE
302
B
ILE
303
n
103
ILE
303
B
LEU
304
n
104
LEU
304
B
PRO
305
n
105
PRO
305
B
CYS
306
n
106
CYS
306
B
LYS
307
n
107
LYS
307
B
HIS
308
n
108
HIS
308
B
GLU
309
n
109
GLU
309
B
VAL
310
n
110
VAL
310
B
LEU
311
n
111
LEU
311
B
GLU
312
n
112
GLU
312
B
GLN
313
n
113
GLN
313
B
GLY
314
n
114
GLY
314
B
LYS
315
n
115
LYS
315
B
VAL
316
n
116
VAL
316
B
VAL
317
n
117
VAL
317
B
n
118
318
B
n
119
319
B
n
120
320
B
n
121
321
B
n
122
322
B
n
123
323
B
n
124
324
B
n
125
325
B
n
126
326
B
n
127
327
B
n
128
328
B
n
129
329
B
n
130
330
B
n
131
331
B
n
132
332
B
n
133
333
B
n
134
334
B
n
135
335
B
n
136
336
B
author_and_software_defined_assembly
PISA,PQS
3
trimeric
author_and_software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PQS
3
trimeric
10440
-65
14160
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
701
C
MG
MG
1_555
A
ASP
64
A
OD1
ASP
64
2_555
94.7
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
701
C
MG
MG
1_555
A
ASP
64
A
OD1
ASP
64
3_555
94.7
A
ASP
64
A
OD1
ASP
64
2_555
A
MG
701
C
MG
MG
1_555
A
ASP
64
A
OD1
ASP
64
3_555
94.7
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
1_555
89.9
A
ASP
64
A
OD1
ASP
64
2_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
1_555
175.4
A
ASP
64
A
OD1
ASP
64
3_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
1_555
85.2
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
2_555
85.2
A
ASP
64
A
OD1
ASP
64
2_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
2_555
89.9
A
ASP
64
A
OD1
ASP
64
3_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
2_555
175.4
A
HOH
403
H
O
HOH
1_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
2_555
90.3
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
3_555
175.4
A
ASP
64
A
OD1
ASP
64
2_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
3_555
85.2
A
ASP
64
A
OD1
ASP
64
3_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
3_555
89.9
A
HOH
403
H
O
HOH
1_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
3_555
90.3
A
HOH
403
H
O
HOH
2_555
A
MG
701
C
MG
MG
1_555
A
HOH
403
H
O
HOH
3_555
90.3
A
HOH
403
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
A
HOH
403
H
O
HOH
2_555
63.4
A
HOH
403
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
A
HOH
403
H
O
HOH
3_555
63.4
A
HOH
403
H
O
HOH
2_555
A
MG
703
D
MG
MG
1_555
A
HOH
403
H
O
HOH
3_555
63.4
A
HOH
403
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
1_555
76.9
A
HOH
403
H
O
HOH
2_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
1_555
84.8
A
HOH
403
H
O
HOH
3_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
1_555
136.9
A
HOH
403
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
2_555
136.9
A
HOH
403
H
O
HOH
2_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
2_555
76.9
A
HOH
403
H
O
HOH
3_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
2_555
84.8
A
HOH
424
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
2_555
117.1
A
HOH
403
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
3_555
84.8
A
HOH
403
H
O
HOH
2_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
3_555
136.9
A
HOH
403
H
O
HOH
3_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
3_555
76.9
A
HOH
424
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
3_555
117.1
A
HOH
424
H
O
HOH
2_555
A
MG
703
D
MG
MG
1_555
A
HOH
424
H
O
HOH
3_555
117.1
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
ASP
264
B
OD1
ASP
64
3_565
60.4
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
ASP
264
B
OD1
ASP
64
2_665
60.4
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
B
ASP
264
B
OD1
ASP
64
2_665
60.4
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
1_555
151.2
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
1_555
92.1
B
ASP
264
B
OD1
ASP
64
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
1_555
100.0
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
2_665
92.0
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
2_665
100.0
B
ASP
264
B
OD1
ASP
64
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
2_665
151.2
B
HOH
414
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
2_665
101.7
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
3_565
100.0
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
3_565
151.2
B
ASP
264
B
OD1
ASP
64
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
3_565
92.1
B
HOH
414
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
3_565
101.7
B
HOH
414
I
O
HOH
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
414
I
O
HOH
3_565
101.7
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
1_555
144.5
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
1_555
144.5
B
ASP
264
B
OD1
ASP
64
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
1_555
144.5
B
HOH
414
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
1_555
63.6
B
HOH
414
I
O
HOH
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
1_555
63.6
B
HOH
414
I
O
HOH
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
1_555
63.6
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
2_665
144.5
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
2_665
144.5
B
ASP
264
B
OD1
ASP
64
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
2_665
144.5
B
HOH
414
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
2_665
63.6
B
HOH
414
I
O
HOH
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
2_665
63.6
B
HOH
414
I
O
HOH
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
2_665
63.6
B
HOH
604
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
2_665
0.0
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
144.5
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
144.5
B
ASP
264
B
OD1
ASP
64
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
144.5
B
HOH
414
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
63.6
B
HOH
414
I
O
HOH
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
63.6
B
HOH
414
I
O
HOH
3_565
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
63.6
B
HOH
604
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
0.0
B
HOH
604
I
O
HOH
2_665
B
MG
702
F
MG
MG
1_555
B
HOH
604
I
O
HOH
3_565
0.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-y,x-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-x+y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-y+1,x-y+1,z
crystal symmetry operation
39.5650000000
68.5285902015
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_565
-x+y,-x+1,z
crystal symmetry operation
-39.5650000000
68.5285902015
0.0000000000
A
N
GLU
4
A
N
GLU
4
A
O
LYS
41
A
O
LYS
41
A
O
LEU
20
A
O
LEU
20
A
N
ILE
98
A
N
ILE
98
A
O
LEU
104
A
O
LEU
104
A
N
TRP
49
A
N
TRP
49
A
O
GLY
50
A
O
GLY
50
A
N
ILE
70
A
N
ILE
70
A
N
LEU
28
A
N
LEU
28
A
O
ILE
90
A
O
ILE
90
A
N
ILE
36
A
N
ILE
36
A
O
VAL
80
A
O
VAL
80
A
O
ILE
83
A
O
ILE
83
A
N
ASP
64
A
N
ASP
64
B
N
GLU
204
B
N
GLU
4
B
O
LYS
241
B
O
LYS
41
B
O
LEU
220
B
O
LEU
20
B
N
ILE
298
B
N
ILE
98
B
O
LEU
304
B
O
LEU
104
B
N
TRP
249
B
N
TRP
49
B
O
GLY
250
B
O
GLY
50
B
N
ILE
270
B
N
ILE
70
B
N
LEU
228
B
N
LEU
28
B
O
ILE
290
B
O
ILE
90
B
N
ILE
236
B
N
ILE
36
B
O
VAL
280
B
O
VAL
80
B
O
ILE
283
B
O
ILE
83
B
N
ASP
264
B
N
ASP
64
1
A
MG
701
C
MG
1
A
MG
703
D
MG
1
B
MG
702
F
MG
1
A
HOH
601
H
HOH
1
A
HOH
602
H
HOH
1
A
HOH
603
H
HOH
1
B
HOH
604
I
HOH
1
B
HOH
605
I
HOH
1
A
MET
118
A
MET
118
1
Y
1
A
ASP
119
A
ASP
119
1
Y
1
A
SER
120
A
SER
120
1
Y
1
A
GLU
121
A
GLU
121
1
Y
1
A
ARG
122
A
ARG
122
1
Y
1
A
GLY
123
A
GLY
123
1
Y
1
A
ASP
124
A
ASP
124
1
Y
1
A
ASN
125
A
ASN
125
1
Y
1
A
GLY
126
A
GLY
126
1
Y
1
A
TYR
127
A
TYR
127
1
Y
1
A
GLY
128
A
GLY
128
1
Y
1
A
SER
129
A
SER
129
1
Y
1
A
THR
130
A
THR
130
1
Y
1
A
GLY
131
A
GLY
131
1
Y
1
A
VAL
132
A
VAL
132
1
Y
1
A
PHE
133
A
PHE
133
1
Y
1
A
SER
134
A
SER
134
1
Y
1
A
SER
135
A
SER
135
1
Y
1
A
TRP
136
A
TRP
136
1
Y
1
B
MET
318
B
MET
118
1
Y
1
B
ASP
319
B
ASP
119
1
Y
1
B
SER
320
B
SER
120
1
Y
1
B
GLU
321
B
GLU
121
1
Y
1
B
ARG
322
B
ARG
122
1
Y
1
B
GLY
323
B
GLY
123
1
Y
1
B
ASP
324
B
ASP
124
1
Y
1
B
ASN
325
B
ASN
125
1
Y
1
B
GLY
326
B
GLY
126
1
Y
1
B
TYR
327
B
TYR
127
1
Y
1
B
GLY
328
B
GLY
128
1
Y
1
B
SER
329
B
SER
129
1
Y
1
B
THR
330
B
THR
130
1
Y
1
B
GLY
331
B
GLY
131
1
Y
1
B
VAL
332
B
VAL
132
1
Y
1
B
PHE
333
B
PHE
133
1
Y
1
B
SER
334
B
SER
134
1
Y
1
B
SER
335
B
SER
135
1
Y
1
B
TRP
336
B
TRP
136
1
Y
1
A
A
O
O
HOH
HOH
454
520
1.96
1
A
A
O
O
HOH
HOH
502
513
1.96
1
A
A
O
O
HOH
HOH
447
499
2.04
1
A
A
O
O
GLY
HOH
67
526
2.14
1
A
A
O
O
HOH
HOH
442
479
2.19
1
A
A
O
O
HOH
HOH
426
477
1.90
1_555
5_555
1
A
A
O
O
HOH
HOH
481
490
2.08
1_555
3_555
0.2210000
2.20
50.0
15105
14409
1
2.0
2.20
50.0
132
1949
43
0
1774
0.010
1.48
29.8
2.20
50.0
1F7K
72884
15105
0.0
0.0
0.0400000
1
15.6
4.8
92.9
0.2880000
2.20
2.28
1
42.7
model building
X-PLOR
refinement
X-PLOR
3.1
data reduction
MOSFLM
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
phasing
X-PLOR
CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS.
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
Trimer is the biologically functional unit
A
LYS
55
A
LYS
55
HELX_P
A
SER
60
A
SER
60
1
1
6
B
LYS
255
B
LYS
55
HELX_P
B
SER
260
B
SER
60
1
2
6
metalc
2.030
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
701
C
MG
MG
1_555
metalc
2.030
A
ASP
64
A
OD1
ASP
64
2_555
A
MG
701
C
MG
MG
1_555
metalc
2.030
A
ASP
64
A
OD1
ASP
64
3_555
A
MG
701
C
MG
MG
1_555
metalc
2.208
A
HOH
403
H
O
HOH
1_555
A
MG
701
C
MG
MG
1_555
metalc
2.208
A
HOH
403
H
O
HOH
2_555
A
MG
701
C
MG
MG
1_555
metalc
2.208
A
HOH
403
H
O
HOH
3_555
A
MG
701
C
MG
MG
1_555
metalc
2.976
A
HOH
403
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
metalc
2.976
A
HOH
403
H
O
HOH
2_555
A
MG
703
D
MG
MG
1_555
metalc
2.976
A
HOH
403
H
O
HOH
3_555
A
MG
703
D
MG
MG
1_555
metalc
2.580
A
HOH
424
H
O
HOH
1_555
A
MG
703
D
MG
MG
1_555
metalc
2.580
A
HOH
424
H
O
HOH
2_555
A
MG
703
D
MG
MG
1_555
metalc
2.580
A
HOH
424
H
O
HOH
3_555
A
MG
703
D
MG
MG
1_555
metalc
2.823
B
ASP
264
B
OD1
ASP
64
1_555
B
MG
702
F
MG
MG
1_555
metalc
2.823
B
ASP
264
B
OD1
ASP
64
3_565
B
MG
702
F
MG
MG
1_555
metalc
2.823
B
ASP
264
B
OD1
ASP
64
2_665
B
MG
702
F
MG
MG
1_555
metalc
1.986
B
HOH
414
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
metalc
1.986
B
HOH
414
I
O
HOH
2_665
B
MG
702
F
MG
MG
1_555
metalc
1.986
B
HOH
414
I
O
HOH
3_565
B
MG
702
F
MG
MG
1_555
metalc
2.428
B
HOH
604
I
O
HOH
1_555
B
MG
702
F
MG
MG
1_555
metalc
2.428
B
HOH
604
I
O
HOH
2_665
B
MG
702
F
MG
MG
1_555
metalc
2.428
B
HOH
604
I
O
HOH
3_565
B
MG
702
F
MG
MG
1_555
Viral protein, hydrolase
Eight stranded beta barrel protein, Viral protein, hydrolase
POL_FIVPE
UNP
1
711
P16088
MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV
IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVM
711
846
1F7K
1
136
P16088
A
1
1
136
711
846
1F7K
201
336
P16088
B
1
1
136
2
4
2
3
2
4
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
3
A
ILE
3
A
GLU
4
A
GLU
4
A
LYS
41
A
LYS
41
A
LEU
42
A
LEU
42
A
TYR
18
A
TYR
18
A
LEU
21
A
LEU
21
A
LYS
97
A
LYS
97
A
PRO
105
A
PRO
105
A
TYR
48
A
TYR
48
A
ILE
53
A
ILE
53
A
VAL
69
A
VAL
69
A
ILE
70
A
ILE
70
A
ILE
26
A
ILE
26
A
LEU
28
A
LEU
28
A
ILE
90
A
ILE
90
A
LEU
92
A
LEU
92
A
VAL
33
A
VAL
33
A
PRO
37
A
PRO
37
A
GLY
79
A
GLY
79
A
ASN
84
A
ASN
84
A
LEU
63
A
LEU
63
A
LEU
66
A
LEU
66
B
ILE
202
B
ILE
2
B
GLU
204
B
GLU
4
B
LYS
241
B
LYS
41
B
MET
243
B
MET
43
B
TYR
218
B
TYR
18
B
LEU
221
B
LEU
21
B
LYS
297
B
LYS
97
B
PRO
305
B
PRO
105
B
TYR
248
B
TYR
48
B
ILE
253
B
ILE
53
B
VAL
269
B
VAL
69
B
ILE
270
B
ILE
70
B
ILE
226
B
ILE
26
B
LEU
228
B
LEU
28
B
ILE
290
B
ILE
90
B
LEU
292
B
LEU
92
B
VAL
233
B
VAL
33
B
PRO
237
B
PRO
37
B
GLY
279
B
GLY
79
B
ASN
284
B
ASN
84
B
LEU
263
B
LEU
63
B
LEU
266
B
LEU
66
BINDING SITE FOR RESIDUE MG A 701
A
MG
701
Software
9
BINDING SITE FOR RESIDUE MG B 702
B
MG
702
Software
9
BINDING SITE FOR RESIDUE MG A 703
A
MG
703
Software
9
BINDING SITE FOR RESIDUE UMP A 704
A
UMP
704
Software
12
BINDING SITE FOR RESIDUE UMP B 703
B
UMP
703
Software
11
A
ASP
64
A
ASP
64
9
2_555
A
ASP
64
A
ASP
64
9
1_555
A
ASP
64
A
ASP
64
9
3_555
A
HOH
403
H
HOH
9
3_555
A
HOH
403
H
HOH
9
2_555
A
HOH
403
H
HOH
9
1_555
A
MG
703
D
MG
9
3_555
A
MG
703
D
MG
9
2_555
A
MG
703
D
MG
9
1_555
B
ASP
264
B
ASP
64
9
1_555
B
ASP
264
B
ASP
64
9
3_565
B
ASP
264
B
ASP
64
9
2_665
B
HOH
414
I
HOH
9
2_665
B
HOH
414
I
HOH
9
3_565
B
HOH
414
I
HOH
9
1_555
B
HOH
604
I
HOH
9
3_565
B
HOH
604
I
HOH
9
2_665
B
HOH
604
I
HOH
9
1_555
A
HOH
403
H
HOH
9
2_555
A
HOH
403
H
HOH
9
3_555
A
HOH
403
H
HOH
9
1_555
A
HOH
424
H
HOH
9
3_555
A
HOH
424
H
HOH
9
1_555
A
HOH
424
H
HOH
9
2_555
A
MG
701
C
MG
9
3_555
A
MG
701
C
MG
9
2_555
A
MG
701
C
MG
9
1_555
A
LYS
55
A
LYS
55
12
3_555
A
SER
56
A
SER
56
12
3_555
A
GLY
68
A
GLY
68
12
1_555
A
VAL
69
A
VAL
69
12
1_555
A
ASP
71
A
ASP
71
12
1_555
A
TYR
74
A
TYR
74
12
1_555
A
GLY
79
A
GLY
79
12
1_555
A
HOH
401
H
HOH
12
1_555
A
HOH
407
H
HOH
12
3_555
A
HOH
425
H
HOH
12
1_555
A
HOH
471
H
HOH
12
1_555
A
HOH
511
H
HOH
12
1_555
B
LYS
255
B
LYS
55
11
3_565
B
SER
256
B
SER
56
11
3_565
B
GLY
268
B
GLY
68
11
1_555
B
VAL
269
B
VAL
69
11
1_555
B
ASP
271
B
ASP
71
11
1_555
B
TYR
274
B
TYR
74
11
1_555
B
GLY
279
B
GLY
79
11
1_555
B
HOH
409
I
HOH
11
1_555
B
HOH
423
I
HOH
11
1_555
B
HOH
430
I
HOH
11
1_555
B
HOH
441
I
HOH
11
3_565
173
P 63