0.013805
0.000000
0.000000
0.000000
0.013805
0.000000
0.000000
0.000000
0.013805
0.00000
0.00000
0.00000
Prasad, G.S.
Stura, E.A.
Elder, J.H.
Stout, C.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90
90
90
72.44
72.44
72.44
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H14 N2 O12 P2
404.161
URIDINE-5'-DIPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
N
C
N
375
N
N
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
O
N
381
R
C
N
382
R
C
N
383
N
O
N
384
S
C
N
385
R
C
N
386
N
O
N
387
N
O
N
388
N
C
N
389
N
O
N
390
N
P
N
391
N
O
N
392
N
O
N
393
N
O
N
394
N
P
N
395
N
O
N
396
N
O
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
56
1100
1109
10.1107/S0907444900009197
10957629
Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms.
2000
US
Protein Sci.
PRCIEI
0795
0961-8368
5
2429
2437
Crystal Structure of dUTP Pyrophosphatase from Feline Immunodeficiency Virus
1996
10.2210/pdb1f7r/pdb
pdb_00001f7r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
1998-09-27
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
SIEMENS
14730.169
POL POLYPROTEIN
3.6.1.23
DUTPASE
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
404.161
URIDINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
54
nat
water
no
no
MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV
IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSW
MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV
IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
cabbage looper
Trichoplusia
sample
11673
Feline immunodeficiency virus
7111
Trichoplusia ni
BACULOVIRUS
FIV-34TF10
1
2.15
42.79
VAPOR DIFFUSION, SITTING DROP
6.5
1.25 M sodium citrate. The protein solution was incubated with 25 mM dUDP prior to crystallization experiments., pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-09-06
1
1
2007-10-16
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1F7D contains the same protein in P63
1F7K contains the same protein complexed with dUMP in P63
1F7N contains the same protein complexed with dUMP in P63
1F7O contains the same protein in P212121
1F7P contains the same protein in complex with dUDP in P212121
1F7Q contains the same protein in complex with dUTP in P212121
RCSB
Y
RCSB
2000-06-27
REL
MG
MAGNESIUM ION
UDP
URIDINE-5'-DIPHOSPHATE
HOH
water
MG
135
2
MG
MG
137
A
UDP
134
3
UDP
UDP
138
A
TIP
201
4
HOH
HOH
201
A
TIP
202
4
HOH
HOH
202
A
TIP
203
4
HOH
HOH
203
A
TIP
204
4
HOH
HOH
204
A
TIP
205
4
HOH
HOH
205
A
TIP
206
4
HOH
HOH
206
A
TIP
207
4
HOH
HOH
207
A
TIP
208
4
HOH
HOH
208
A
TIP
209
4
HOH
HOH
209
A
TIP
210
4
HOH
HOH
210
A
TIP
211
4
HOH
HOH
211
A
TIP
213
4
HOH
HOH
213
A
TIP
214
4
HOH
HOH
214
A
TIP
215
4
HOH
HOH
215
A
TIP
216
4
HOH
HOH
216
A
TIP
217
4
HOH
HOH
217
A
TIP
218
4
HOH
HOH
218
A
TIP
219
4
HOH
HOH
219
A
TIP
220
4
HOH
HOH
220
A
TIP
221
4
HOH
HOH
221
A
TIP
222
4
HOH
HOH
222
A
TIP
223
4
HOH
HOH
223
A
TIP
224
4
HOH
HOH
224
A
TIP
225
4
HOH
HOH
225
A
TIP
226
4
HOH
HOH
226
A
TIP
227
4
HOH
HOH
227
A
TIP
228
4
HOH
HOH
228
A
TIP
229
4
HOH
HOH
229
A
TIP
230
4
HOH
HOH
230
A
TIP
231
4
HOH
HOH
231
A
TIP
232
4
HOH
HOH
232
A
TIP
233
4
HOH
HOH
233
A
TIP
234
4
HOH
HOH
234
A
TIP
235
4
HOH
HOH
235
A
TIP
236
4
HOH
HOH
236
A
TIP
237
4
HOH
HOH
237
A
TIP
238
4
HOH
HOH
238
A
TIP
239
4
HOH
HOH
239
A
TIP
240
4
HOH
HOH
240
A
TIP
241
4
HOH
HOH
241
A
TIP
242
4
HOH
HOH
242
A
TIP
243
4
HOH
HOH
243
A
TIP
244
4
HOH
HOH
244
A
TIP
245
4
HOH
HOH
245
A
TIP
246
4
HOH
HOH
246
A
TIP
247
4
HOH
HOH
247
A
TIP
248
4
HOH
HOH
248
A
TIP
249
4
HOH
HOH
249
A
TIP
250
4
HOH
HOH
250
A
TIP
251
4
HOH
HOH
251
A
TIP
252
4
HOH
HOH
252
A
TIP
253
4
HOH
HOH
253
A
TIP
254
4
HOH
HOH
254
A
TIP
255
4
HOH
HOH
255
A
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
ILE
3
n
3
ILE
3
A
GLU
4
n
4
GLU
4
A
GLY
5
n
5
GLY
5
A
ASP
6
n
6
ASP
6
A
GLY
7
n
7
GLY
7
A
ILE
8
n
8
ILE
8
A
LEU
9
n
9
LEU
9
A
ASP
10
n
10
ASP
10
A
LYS
11
n
11
LYS
11
A
ARG
12
n
12
ARG
12
A
SER
13
n
13
SER
13
A
GLU
14
n
14
GLU
14
A
ASP
15
n
15
ASP
15
A
ALA
16
n
16
ALA
16
A
GLY
17
n
17
GLY
17
A
TYR
18
n
18
TYR
18
A
ASP
19
n
19
ASP
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
ALA
22
n
22
ALA
22
A
ALA
23
n
23
ALA
23
A
LYS
24
n
24
LYS
24
A
GLU
25
n
25
GLU
25
A
ILE
26
n
26
ILE
26
A
HIS
27
n
27
HIS
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
PRO
30
n
30
PRO
30
A
GLY
31
n
31
GLY
31
A
GLU
32
n
32
GLU
32
A
VAL
33
n
33
VAL
33
A
LYS
34
n
34
LYS
34
A
VAL
35
n
35
VAL
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
THR
38
n
38
THR
38
A
GLY
39
n
39
GLY
39
A
VAL
40
n
40
VAL
40
A
LYS
41
n
41
LYS
41
A
LEU
42
n
42
LEU
42
A
MET
43
n
43
MET
43
A
LEU
44
n
44
LEU
44
A
PRO
45
n
45
PRO
45
A
LYS
46
n
46
LYS
46
A
GLY
47
n
47
GLY
47
A
TYR
48
n
48
TYR
48
A
TRP
49
n
49
TRP
49
A
GLY
50
n
50
GLY
50
A
LEU
51
n
51
LEU
51
A
ILE
52
n
52
ILE
52
A
ILE
53
n
53
ILE
53
A
GLY
54
n
54
GLY
54
A
LYS
55
n
55
LYS
55
A
SER
56
n
56
SER
56
A
SER
57
n
57
SER
57
A
ILE
58
n
58
ILE
58
A
GLY
59
n
59
GLY
59
A
SER
60
n
60
SER
60
A
LYS
61
n
61
LYS
61
A
GLY
62
n
62
GLY
62
A
LEU
63
n
63
LEU
63
A
ASP
64
n
64
ASP
64
A
VAL
65
n
65
VAL
65
A
LEU
66
n
66
LEU
66
A
GLY
67
n
67
GLY
67
A
GLY
68
n
68
GLY
68
A
VAL
69
n
69
VAL
69
A
ILE
70
n
70
ILE
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
GLY
73
n
73
GLY
73
A
TYR
74
n
74
TYR
74
A
ARG
75
n
75
ARG
75
A
GLY
76
n
76
GLY
76
A
GLU
77
n
77
GLU
77
A
ILE
78
n
78
ILE
78
A
GLY
79
n
79
GLY
79
A
VAL
80
n
80
VAL
80
A
ILE
81
n
81
ILE
81
A
MET
82
n
82
MET
82
A
ILE
83
n
83
ILE
83
A
ASN
84
n
84
ASN
84
A
VAL
85
n
85
VAL
85
A
SER
86
n
86
SER
86
A
ARG
87
n
87
ARG
87
A
LYS
88
n
88
LYS
88
A
SER
89
n
89
SER
89
A
ILE
90
n
90
ILE
90
A
THR
91
n
91
THR
91
A
LEU
92
n
92
LEU
92
A
MET
93
n
93
MET
93
A
GLU
94
n
94
GLU
94
A
ARG
95
n
95
ARG
95
A
GLN
96
n
96
GLN
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
ALA
99
n
99
ALA
99
A
GLN
100
n
100
GLN
100
A
LEU
101
n
101
LEU
101
A
ILE
102
n
102
ILE
102
A
ILE
103
n
103
ILE
103
A
LEU
104
n
104
LEU
104
A
PRO
105
n
105
PRO
105
A
CYS
106
n
106
CYS
106
A
LYS
107
n
107
LYS
107
A
HIS
108
n
108
HIS
108
A
GLU
109
n
109
GLU
109
A
VAL
110
n
110
VAL
110
A
LEU
111
n
111
LEU
111
A
GLU
112
n
112
GLU
112
A
GLN
113
n
113
GLN
113
A
GLY
114
n
114
GLY
114
A
LYS
115
n
115
LYS
115
A
VAL
116
n
116
VAL
116
A
VAL
117
n
117
VAL
117
A
MET
118
n
118
MET
118
A
ASP
119
n
119
ASP
119
A
SER
120
n
120
SER
120
A
GLU
121
n
121
GLU
121
A
ARG
122
n
122
ARG
122
A
GLY
123
n
123
GLY
123
A
ASP
124
n
124
ASP
124
A
ASN
125
n
125
ASN
125
A
GLY
126
n
126
GLY
126
A
TYR
127
n
127
TYR
127
A
GLY
128
n
128
GLY
128
A
SER
129
n
129
SER
129
A
THR
130
n
130
THR
130
A
GLY
131
n
131
GLY
131
A
VAL
132
n
132
VAL
132
A
PHE
133
n
133
PHE
133
A
n
134
134
A
n
135
135
A
n
136
136
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
14940
-74
14900
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
137
B
MG
MG
1_555
A
ASP
64
A
OD1
ASP
64
8_645
93.7
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
137
B
MG
MG
1_555
A
ASP
64
A
OD2
ASP
64
8_645
123.6
A
ASP
64
A
OD1
ASP
64
8_645
A
MG
137
B
MG
MG
1_555
A
ASP
64
A
OD2
ASP
64
8_645
55.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
8_645
-z+1,x-1/2,-y+1/2
crystal symmetry operation
72.4400000000
-36.2200000000
36.2200000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
11_556
y+1/2,-z+1/2,-x+1
crystal symmetry operation
36.2200000000
36.2200000000
72.4400000000
A
N
GLU
4
A
N
GLU
4
A
O
LYS
41
A
O
LYS
41
A
O
LEU
20
A
O
LEU
20
A
N
ILE
98
A
N
ILE
98
A
O
LEU
104
A
O
LEU
104
A
N
TRP
49
A
N
TRP
49
A
O
GLY
50
A
O
GLY
50
A
N
ILE
70
A
N
ILE
70
A
N
LEU
28
A
N
LEU
28
A
O
ILE
90
A
O
ILE
90
A
O
ILE
36
A
O
ILE
36
A
N
VAL
80
A
N
VAL
80
A
N
ILE
83
A
N
ILE
83
A
O
ASP
64
A
O
ASP
64
1
A
O2'
UDP
138
C
O2'
UDP
1
1
N
1
A
SER
134
A
SER
134
1
Y
1
A
SER
135
A
SER
135
1
Y
1
A
TRP
136
A
TRP
136
1
Y
1
A
A
MG
MG
MG
MG
137
137
1.54
1_555
8_645
1
A
ARG
122
169.76
-51.04
1
A
TYR
127
70.98
43.40
0.1920000
2.50
50.0
4414
3778
1
2.0
2.50
50.0
54
1083
25
0
1004
0.013
1.72
30.3
2.50
50.0
1F7R
10960
4414
0
0
0.1040000
1
11.1
2.5
96.4
0.2460000
2.50
2.59
1
92.5
CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS.
1
N
N
2
N
N
3
N
N
4
N
N
Trimer is the functional form of the enzyme
A
LYS
55
A
LYS
55
HELX_P
A
SER
60
A
SER
60
1
1
6
metalc
2.387
A
ASP
64
A
OD1
ASP
64
1_555
A
MG
137
B
MG
MG
1_555
metalc
2.135
A
ASP
64
A
OD1
ASP
64
8_645
A
MG
137
B
MG
MG
1_555
metalc
2.543
A
ASP
64
A
OD2
ASP
64
8_645
A
MG
137
B
MG
MG
1_555
Viral protein, hydrolase
Eight stranded beta barrel protein, Viral protein, hydrolase
POL_FIVPE
UNP
1
711
P16088
MIIEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV
IMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGSTGVFSSW
711
846
1F7R
1
136
P16088
A
1
1
136
2
4
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
3
A
ILE
3
A
GLU
4
A
GLU
4
A
LYS
41
A
LYS
41
A
LEU
42
A
LEU
42
A
TYR
18
A
TYR
18
A
LEU
21
A
LEU
21
A
LYS
97
A
LYS
97
A
PRO
105
A
PRO
105
A
TYR
48
A
TYR
48
A
ILE
53
A
ILE
53
A
VAL
69
A
VAL
69
A
ILE
70
A
ILE
70
A
ILE
26
A
ILE
26
A
LEU
28
A
LEU
28
A
ILE
90
A
ILE
90
A
LEU
92
A
LEU
92
A
VAL
33
A
VAL
33
A
PRO
37
A
PRO
37
A
GLY
79
A
GLY
79
A
ASN
84
A
ASN
84
A
LEU
63
A
LEU
63
A
LEU
66
A
LEU
66
BINDING SITE FOR RESIDUE MG A 137
A
MG
137
Software
3
BINDING SITE FOR RESIDUE UDP A 138
A
UDP
138
Software
17
A
ASP
64
A
ASP
64
3
8_645
A
ASP
64
A
ASP
64
3
1_555
A
ASP
64
A
ASP
64
3
11_556
A
LYS
55
A
LYS
55
17
8_645
A
SER
56
A
SER
56
17
8_645
A
SER
57
A
SER
57
17
8_645
A
GLY
68
A
GLY
68
17
1_555
A
VAL
69
A
VAL
69
17
1_555
A
ILE
70
A
ILE
70
17
1_555
A
ASP
71
A
ASP
71
17
1_555
A
TYR
74
A
TYR
74
17
1_555
A
GLY
79
A
GLY
79
17
1_555
A
ILE
81
A
ILE
81
17
1_555
A
ARG
122
A
ARG
122
17
11_556
A
TYR
127
A
TYR
127
17
11_556
A
GLY
128
A
GLY
128
17
11_556
A
SER
129
A
SER
129
17
11_556
A
HOH
202
D
HOH
17
1_555
A
HOH
217
D
HOH
17
1_555
A
HOH
230
D
HOH
17
1_555
198
P 21 3