1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Moy, F.J.
Glasfeld, E.
Mosyak, L.
Powers, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
39
9146
9156
10.1021/bi0009690
10924108
Solution structure of ZipA, a crucial component of Escherichia coli cell division.
2000
To be Published
0353
1H, 15N, 13C, and 13CO Assignments and Secondary Structure Determination of ZipA
10.2210/pdb1f7w/pdb
pdb_00001f7w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
16135.430
CELL DIVISION PROTEIN ZIPA
C-TERMINAL DOMAIN, RESIDUES 185-328
1
man
polymer
no
no
MDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTP
GVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA
MDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTP
GVTIFMQVPSYGDELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
PLASMID
PEG041
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-06-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2000-06-28
REL
The structure was determined using triple-resonance NMR spectroscopy.
refinement program: x-plor V3.840, authors: brunger
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHA
2D_15N_HSQC
50 mM KCl
5.5
ambient
298
K
50 mM KCl
5.5
ambient
298
K
50 mM KCl
5.5
ambient
298
K
The structures are based on a total of 2758 restraints, 2038 are NOE-derived distance constraints, 377 dihedral angle restraints, 84 distance restraints from hydrogen bonds, 113 3JNHa coupling restraints, 230 secondary Ca/Cb chemical shift restraints, and a conformational database. The coordinates in this entry corrospond to the refined minimized average structure determined from an ensemble of 30 structures
distance geometry simulated annealing
1
nmr, minimized average structure
1 mM ZipA U-15N,13C; 50mM phosphate buffer; 2 mM NaN3; 50 mM KCl; 90% H2O, 10% D2O; pH 5.5
90% H2O/10% D2O
1 mM ZipA U-15N,13C; 50mM phosphate buffer; 2 mM NaN3; 50 mM KCl; 100% D2O; pH 5.5
100% D2O
1 mM ZipA U-15N; 50mM phosphate buffer; 2 mM NaN3; 50 mM KCl; 90% H2O, 10% D2O; pH 5.5
90% H2O/10% D2O
Brunger
structure solution
X-PLOR
V3.840
Delaglio
processing
NMRPipe
1.7
Garrett
data analysis
PIPP
4.2.8
Bruker
collection
XwinNMR
2.0
Brunger
refinement
X-PLOR
V3.840
600
Bruker
DRX
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
LYS
3
n
3
LYS
3
A
PRO
4
n
4
PRO
4
A
LYS
5
n
5
LYS
5
A
ARG
6
n
6
ARG
6
A
LYS
7
n
7
LYS
7
A
GLU
8
n
8
GLU
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
ILE
11
n
11
ILE
11
A
ILE
12
n
12
ILE
12
A
MET
13
n
13
MET
13
A
ASN
14
n
14
ASN
14
A
VAL
15
n
15
VAL
15
A
ALA
16
n
16
ALA
16
A
ALA
17
n
17
ALA
17
A
HIS
18
n
18
HIS
18
A
HIS
19
n
19
HIS
19
A
GLY
20
n
20
GLY
20
A
SER
21
n
21
SER
21
A
GLU
22
n
22
GLU
22
A
LEU
23
n
23
LEU
23
A
ASN
24
n
24
ASN
24
A
GLY
25
n
25
GLY
25
A
GLU
26
n
26
GLU
26
A
LEU
27
n
27
LEU
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
ASN
30
n
30
ASN
30
A
SER
31
n
31
SER
31
A
ILE
32
n
32
ILE
32
A
GLN
33
n
33
GLN
33
A
GLN
34
n
34
GLN
34
A
ALA
35
n
35
ALA
35
A
GLY
36
n
36
GLY
36
A
PHE
37
n
37
PHE
37
A
ILE
38
n
38
ILE
38
A
PHE
39
n
39
PHE
39
A
GLY
40
n
40
GLY
40
A
ASP
41
n
41
ASP
41
A
MET
42
n
42
MET
42
A
ASN
43
n
43
ASN
43
A
ILE
44
n
44
ILE
44
A
TYR
45
n
45
TYR
45
A
HIS
46
n
46
HIS
46
A
ARG
47
n
47
ARG
47
A
HIS
48
n
48
HIS
48
A
LEU
49
n
49
LEU
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
PRO
56
n
56
PRO
56
A
ALA
57
n
57
ALA
57
A
LEU
58
n
58
LEU
58
A
PHE
59
n
59
PHE
59
A
SER
60
n
60
SER
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ASN
63
n
63
ASN
63
A
MET
64
n
64
MET
64
A
VAL
65
n
65
VAL
65
A
LYS
66
n
66
LYS
66
A
PRO
67
n
67
PRO
67
A
GLY
68
n
68
GLY
68
A
THR
69
n
69
THR
69
A
PHE
70
n
70
PHE
70
A
ASP
71
n
71
ASP
71
A
PRO
72
n
72
PRO
72
A
GLU
73
n
73
GLU
73
A
MET
74
n
74
MET
74
A
LYS
75
n
75
LYS
75
A
ASP
76
n
76
ASP
76
A
PHE
77
n
77
PHE
77
A
THR
78
n
78
THR
78
A
THR
79
n
79
THR
79
A
PRO
80
n
80
PRO
80
A
GLY
81
n
81
GLY
81
A
VAL
82
n
82
VAL
82
A
THR
83
n
83
THR
83
A
ILE
84
n
84
ILE
84
A
PHE
85
n
85
PHE
85
A
MET
86
n
86
MET
86
A
GLN
87
n
87
GLN
87
A
VAL
88
n
88
VAL
88
A
PRO
89
n
89
PRO
89
A
SER
90
n
90
SER
90
A
TYR
91
n
91
TYR
91
A
GLY
92
n
92
GLY
92
A
ASP
93
n
93
ASP
93
A
GLU
94
n
94
GLU
94
A
LEU
95
n
95
LEU
95
A
GLN
96
n
96
GLN
96
A
ASN
97
n
97
ASN
97
A
PHE
98
n
98
PHE
98
A
LYS
99
n
99
LYS
99
A
LEU
100
n
100
LEU
100
A
MET
101
n
101
MET
101
A
LEU
102
n
102
LEU
102
A
GLN
103
n
103
GLN
103
A
SER
104
n
104
SER
104
A
ALA
105
n
105
ALA
105
A
GLN
106
n
106
GLN
106
A
HIS
107
n
107
HIS
107
A
ILE
108
n
108
ILE
108
A
ALA
109
n
109
ALA
109
A
ASP
110
n
110
ASP
110
A
GLU
111
n
111
GLU
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
GLY
114
n
114
GLY
114
A
VAL
115
n
115
VAL
115
A
VAL
116
n
116
VAL
116
A
LEU
117
n
117
LEU
117
A
ASP
118
n
118
ASP
118
A
ASP
119
n
119
ASP
119
A
GLN
120
n
120
GLN
120
A
ARG
121
n
121
ARG
121
A
ARG
122
n
122
ARG
122
A
MET
123
n
123
MET
123
A
MET
124
n
124
MET
124
A
THR
125
n
125
THR
125
A
PRO
126
n
126
PRO
126
A
GLN
127
n
127
GLN
127
A
LYS
128
n
128
LYS
128
A
LEU
129
n
129
LEU
129
A
ARG
130
n
130
ARG
130
A
GLU
131
n
131
GLU
131
A
TYR
132
n
132
TYR
132
A
GLN
133
n
133
GLN
133
A
ASP
134
n
134
ASP
134
A
ILE
135
n
135
ILE
135
A
ILE
136
n
136
ILE
136
A
ARG
137
n
137
ARG
137
A
GLU
138
n
138
GLU
138
A
VAL
139
n
139
VAL
139
A
LYS
140
n
140
LYS
140
A
ASP
141
n
141
ASP
141
A
ALA
142
n
142
ALA
142
A
ASN
143
n
143
ASN
143
A
ALA
144
n
144
ALA
144
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
40
A
N
GLY
40
A
O
ILE
44
A
O
ILE
44
A
O
ARG
47
A
O
ARG
47
A
N
LEU
58
A
N
LEU
58
A
O
ALA
62
A
O
ALA
62
A
N
THR
83
A
N
THR
83
A
N
MET
86
A
N
MET
86
A
O
ILE
11
A
O
ILE
11
A
N
ALA
16
A
N
ALA
16
A
O
VAL
115
A
O
VAL
115
A
N
LEU
23
A
N
LEU
23
A
O
THR
79
A
O
THR
79
1
A
A
OD2
HZ1
ASP
LYS
118
128
1.45
1
A
A
O
H
ALA
THR
62
83
1.52
1
A
A
OD1
H
ASP
ARG
118
122
1.53
1
A
A
O
H
LYS
ALA
140
144
1.55
1
A
PRO
4
-64.53
69.15
1
A
LYS
5
-68.93
11.96
1
A
ALA
17
-74.69
-168.91
1
A
PHE
39
-59.99
103.83
1
A
ASP
41
-64.54
-162.68
1
A
ASP
76
-152.59
73.41
SOLUTION STRUCTURE OF C-TERMINAL DOMAIN ZIPA
1
N
N
A
GLY
25
A
GLY
25
HELX_P
A
ALA
35
A
ALA
35
1
1
11
A
ASP
93
A
ASP
93
HELX_P
A
GLY
113
A
GLY
113
1
2
21
A
THR
125
A
THR
125
HELX_P
A
ALA
144
A
ALA
144
1
3
20
CELL CYCLE
Alpha-Beta fold, CELL DIVISION, SEPTATION, TRANSMEMBRANE, CELL CYCLE
A
LYS
66
A
LYS
66
1
A
PRO
67
A
PRO
67
-0.29
A
VAL
88
A
VAL
88
1
A
PRO
89
A
PRO
89
0.10
ZIPA_ECOLI
UNP
1
P77173
185
328
1F7W
1
144
P77173
A
1
1
144
6
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
38
A
ILE
38
A
GLY
40
A
GLY
40
A
ILE
44
A
ILE
44
A
HIS
48
A
HIS
48
A
ALA
57
A
ALA
57
A
ASN
63
A
ASN
63
A
GLY
81
A
GLY
81
A
GLN
87
A
GLN
87
A
VAL
10
A
VAL
10
A
ALA
16
A
ALA
16
A
VAL
115
A
VAL
115
A
LEU
117
A
LEU
117
A
LEU
23
A
LEU
23
A
ASN
24
A
ASN
24
A
THR
78
A
THR
78
A
THR
79
A
THR
79