0.006444
0.000000
0.000000
0.000000
0.006444
0.000000
0.000000
0.000000
0.005280
0.00000
0.00000
0.00000
Yeh, J.I.
Claiborne, A.
Hol, W.G.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90
90
90
155.18
155.18
189.41
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O3 S
137.158
n
S-OXY CYSTEINE
L-peptide linking
C27 H33 N9 O15 P2
785.550
FLAVIN-ADENINE DINUCLEOTIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
39
10353
10364
10.1021/bi000553m
10956025
Analysis of the kinetic and redox properties of the NADH peroxidase R303M mutant: correlation with the crystal structure.
2000
US
Biochemistry
BICHAW
0033
0006-2960
35
9951
9957
10.1021/bi961037s
Structure of the Native Cysteine-sulfenic Acid Redox Center of Enterococcal NADH Peroxidase Refined at 2.8 A Resolution
1996
10.2210/pdb1f8w/pdb
pdb_00001f8w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
1996-08-08
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.08
1.0
BL7-1
SSRL
1.08
SYNCHROTRON
SSRL BEAMLINE BL7-1
49593.230
NADH PEROXIDASE
1.11.1.1
ARG 303 TO MET 303
1
man
polymer
785.550
FLAVIN-ADENINE DINUCLEOTIDE
1
syn
non-polymer
18.015
water
131
nat
water
no
yes
MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS(CSX)GMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSN
TEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIG
SGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDAD
LVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNLEEP
VKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKAD
LTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQER
MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT
AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI
GIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV
AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNLEEPVKPF
PGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTAN
INAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQER
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Enterococcus
Escherichia
sample
1351
Enterococcus faecalis
562
Escherichia coli
PLASMID
PR303M
1
2.8
VAPOR DIFFUSION, HANGING DROP
7.2
2% PEG 400, 2.0 M (NH4)2SO4, 100 mM Na Hepes, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
citation_author
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Database references
Database references
Derived calculations
1
0
2001-02-05
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-24
1
4
2018-01-31
1
5
2021-11-03
_citation_author.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Active, Native Form With Cysteine-Sulfenic Acid
Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Cys 42 Replaced By Ala (C42A)
Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Cys 42 Replaced By Ser (C42S)
Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Leu 40 Replaced By Cys (L40C)
Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Ser 41 Replaced By Cys (S41C)
Nadh Peroxidase (E.C. 1.11.1.1) Non-Active Form With Cys 42 Oxidized To A Sulfonic Acid
RCSB
Y
RCSB
2000-07-05
REL
FAD
FLAVIN-ADENINE DINUCLEOTIDE
HOH
water
FAD
448
2
FAD
FAD
448
A
HOH
1
3
HOH
HOH
449
A
HOH
2
3
HOH
HOH
450
A
HOH
3
3
HOH
HOH
451
A
HOH
4
3
HOH
HOH
452
A
HOH
5
3
HOH
HOH
453
A
HOH
6
3
HOH
HOH
454
A
HOH
7
3
HOH
HOH
455
A
HOH
8
3
HOH
HOH
456
A
HOH
9
3
HOH
HOH
457
A
HOH
10
3
HOH
HOH
458
A
HOH
11
3
HOH
HOH
459
A
HOH
12
3
HOH
HOH
460
A
HOH
13
3
HOH
HOH
461
A
HOH
14
3
HOH
HOH
462
A
HOH
15
3
HOH
HOH
463
A
HOH
16
3
HOH
HOH
464
A
HOH
17
3
HOH
HOH
465
A
HOH
18
3
HOH
HOH
466
A
HOH
19
3
HOH
HOH
467
A
HOH
20
3
HOH
HOH
468
A
HOH
21
3
HOH
HOH
469
A
HOH
22
3
HOH
HOH
470
A
HOH
23
3
HOH
HOH
471
A
HOH
24
3
HOH
HOH
472
A
HOH
25
3
HOH
HOH
473
A
HOH
26
3
HOH
HOH
474
A
HOH
27
3
HOH
HOH
475
A
HOH
28
3
HOH
HOH
476
A
HOH
29
3
HOH
HOH
477
A
HOH
30
3
HOH
HOH
478
A
HOH
31
3
HOH
HOH
479
A
HOH
32
3
HOH
HOH
480
A
HOH
33
3
HOH
HOH
481
A
HOH
34
3
HOH
HOH
482
A
HOH
35
3
HOH
HOH
483
A
HOH
36
3
HOH
HOH
484
A
HOH
37
3
HOH
HOH
485
A
HOH
38
3
HOH
HOH
486
A
HOH
39
3
HOH
HOH
487
A
HOH
40
3
HOH
HOH
488
A
HOH
41
3
HOH
HOH
489
A
HOH
42
3
HOH
HOH
490
A
HOH
43
3
HOH
HOH
491
A
HOH
44
3
HOH
HOH
492
A
HOH
45
3
HOH
HOH
493
A
HOH
46
3
HOH
HOH
494
A
HOH
47
3
HOH
HOH
495
A
HOH
48
3
HOH
HOH
496
A
HOH
49
3
HOH
HOH
497
A
HOH
50
3
HOH
HOH
498
A
HOH
51
3
HOH
HOH
499
A
HOH
52
3
HOH
HOH
500
A
HOH
53
3
HOH
HOH
501
A
HOH
54
3
HOH
HOH
502
A
HOH
55
3
HOH
HOH
503
A
HOH
56
3
HOH
HOH
504
A
HOH
57
3
HOH
HOH
505
A
HOH
58
3
HOH
HOH
506
A
HOH
59
3
HOH
HOH
507
A
HOH
60
3
HOH
HOH
508
A
HOH
61
3
HOH
HOH
509
A
HOH
62
3
HOH
HOH
510
A
HOH
63
3
HOH
HOH
511
A
HOH
64
3
HOH
HOH
512
A
HOH
65
3
HOH
HOH
513
A
HOH
66
3
HOH
HOH
514
A
HOH
67
3
HOH
HOH
515
A
HOH
68
3
HOH
HOH
516
A
HOH
69
3
HOH
HOH
517
A
HOH
70
3
HOH
HOH
518
A
HOH
71
3
HOH
HOH
519
A
HOH
72
3
HOH
HOH
520
A
HOH
73
3
HOH
HOH
521
A
HOH
74
3
HOH
HOH
522
A
HOH
75
3
HOH
HOH
523
A
HOH
76
3
HOH
HOH
524
A
HOH
77
3
HOH
HOH
525
A
HOH
78
3
HOH
HOH
526
A
HOH
79
3
HOH
HOH
527
A
HOH
80
3
HOH
HOH
528
A
HOH
81
3
HOH
HOH
529
A
HOH
82
3
HOH
HOH
530
A
HOH
83
3
HOH
HOH
531
A
HOH
84
3
HOH
HOH
532
A
HOH
85
3
HOH
HOH
533
A
HOH
86
3
HOH
HOH
534
A
HOH
87
3
HOH
HOH
535
A
HOH
88
3
HOH
HOH
536
A
HOH
89
3
HOH
HOH
537
A
HOH
90
3
HOH
HOH
538
A
HOH
91
3
HOH
HOH
539
A
HOH
92
3
HOH
HOH
540
A
HOH
93
3
HOH
HOH
541
A
HOH
94
3
HOH
HOH
542
A
HOH
95
3
HOH
HOH
543
A
HOH
96
3
HOH
HOH
544
A
HOH
97
3
HOH
HOH
545
A
HOH
98
3
HOH
HOH
546
A
HOH
99
3
HOH
HOH
547
A
HOH
100
3
HOH
HOH
548
A
HOH
101
3
HOH
HOH
549
A
HOH
102
3
HOH
HOH
550
A
HOH
103
3
HOH
HOH
551
A
HOH
104
3
HOH
HOH
552
A
HOH
105
3
HOH
HOH
553
A
HOH
106
3
HOH
HOH
554
A
HOH
107
3
HOH
HOH
555
A
HOH
108
3
HOH
HOH
556
A
HOH
109
3
HOH
HOH
557
A
HOH
110
3
HOH
HOH
558
A
HOH
111
3
HOH
HOH
559
A
HOH
112
3
HOH
HOH
560
A
HOH
113
3
HOH
HOH
561
A
HOH
114
3
HOH
HOH
562
A
HOH
115
3
HOH
HOH
563
A
HOH
116
3
HOH
HOH
564
A
HOH
117
3
HOH
HOH
565
A
HOH
118
3
HOH
HOH
566
A
HOH
119
3
HOH
HOH
567
A
HOH
120
3
HOH
HOH
568
A
HOH
121
3
HOH
HOH
569
A
HOH
122
3
HOH
HOH
570
A
HOH
123
3
HOH
HOH
571
A
HOH
124
3
HOH
HOH
572
A
HOH
125
3
HOH
HOH
573
A
HOH
126
3
HOH
HOH
574
A
HOH
127
3
HOH
HOH
575
A
HOH
128
3
HOH
HOH
576
A
HOH
129
3
HOH
HOH
577
A
HOH
130
3
HOH
HOH
578
A
HOH
131
3
HOH
HOH
579
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
VAL
3
n
3
VAL
3
A
ILE
4
n
4
ILE
4
A
VAL
5
n
5
VAL
5
A
LEU
6
n
6
LEU
6
A
GLY
7
n
7
GLY
7
A
SER
8
n
8
SER
8
A
SER
9
n
9
SER
9
A
HIS
10
n
10
HIS
10
A
GLY
11
n
11
GLY
11
A
GLY
12
n
12
GLY
12
A
TYR
13
n
13
TYR
13
A
GLU
14
n
14
GLU
14
A
ALA
15
n
15
ALA
15
A
VAL
16
n
16
VAL
16
A
GLU
17
n
17
GLU
17
A
GLU
18
n
18
GLU
18
A
LEU
19
n
19
LEU
19
A
LEU
20
n
20
LEU
20
A
ASN
21
n
21
ASN
21
A
LEU
22
n
22
LEU
22
A
HIS
23
n
23
HIS
23
A
PRO
24
n
24
PRO
24
A
ASP
25
n
25
ASP
25
A
ALA
26
n
26
ALA
26
A
GLU
27
n
27
GLU
27
A
ILE
28
n
28
ILE
28
A
GLN
29
n
29
GLN
29
A
TRP
30
n
30
TRP
30
A
TYR
31
n
31
TYR
31
A
GLU
32
n
32
GLU
32
A
LYS
33
n
33
LYS
33
A
GLY
34
n
34
GLY
34
A
ASP
35
n
35
ASP
35
A
PHE
36
n
36
PHE
36
A
ILE
37
n
37
ILE
37
A
SER
38
n
38
SER
38
A
PHE
39
n
39
PHE
39
A
LEU
40
n
40
LEU
40
A
SER
41
n
41
SER
41
A
CYS
42
n
42
CSX
42
A
GLY
43
n
43
GLY
43
A
MET
44
n
44
MET
44
A
GLN
45
n
45
GLN
45
A
LEU
46
n
46
LEU
46
A
TYR
47
n
47
TYR
47
A
LEU
48
n
48
LEU
48
A
GLU
49
n
49
GLU
49
A
GLY
50
n
50
GLY
50
A
LYS
51
n
51
LYS
51
A
VAL
52
n
52
VAL
52
A
LYS
53
n
53
LYS
53
A
ASP
54
n
54
ASP
54
A
VAL
55
n
55
VAL
55
A
ASN
56
n
56
ASN
56
A
SER
57
n
57
SER
57
A
VAL
58
n
58
VAL
58
A
ARG
59
n
59
ARG
59
A
TYR
60
n
60
TYR
60
A
MET
61
n
61
MET
61
A
THR
62
n
62
THR
62
A
GLY
63
n
63
GLY
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
MET
66
n
66
MET
66
A
GLU
67
n
67
GLU
67
A
SER
68
n
68
SER
68
A
ARG
69
n
69
ARG
69
A
GLY
70
n
70
GLY
70
A
VAL
71
n
71
VAL
71
A
ASN
72
n
72
ASN
72
A
VAL
73
n
73
VAL
73
A
PHE
74
n
74
PHE
74
A
SER
75
n
75
SER
75
A
ASN
76
n
76
ASN
76
A
THR
77
n
77
THR
77
A
GLU
78
n
78
GLU
78
A
ILE
79
n
79
ILE
79
A
THR
80
n
80
THR
80
A
ALA
81
n
81
ALA
81
A
ILE
82
n
82
ILE
82
A
GLN
83
n
83
GLN
83
A
PRO
84
n
84
PRO
84
A
LYS
85
n
85
LYS
85
A
GLU
86
n
86
GLU
86
A
HIS
87
n
87
HIS
87
A
GLN
88
n
88
GLN
88
A
VAL
89
n
89
VAL
89
A
THR
90
n
90
THR
90
A
VAL
91
n
91
VAL
91
A
LYS
92
n
92
LYS
92
A
ASP
93
n
93
ASP
93
A
LEU
94
n
94
LEU
94
A
VAL
95
n
95
VAL
95
A
SER
96
n
96
SER
96
A
GLY
97
n
97
GLY
97
A
GLU
98
n
98
GLU
98
A
GLU
99
n
99
GLU
99
A
ARG
100
n
100
ARG
100
A
VAL
101
n
101
VAL
101
A
GLU
102
n
102
GLU
102
A
ASN
103
n
103
ASN
103
A
TYR
104
n
104
TYR
104
A
ASP
105
n
105
ASP
105
A
LYS
106
n
106
LYS
106
A
LEU
107
n
107
LEU
107
A
ILE
108
n
108
ILE
108
A
ILE
109
n
109
ILE
109
A
SER
110
n
110
SER
110
A
PRO
111
n
111
PRO
111
A
GLY
112
n
112
GLY
112
A
ALA
113
n
113
ALA
113
A
VAL
114
n
114
VAL
114
A
PRO
115
n
115
PRO
115
A
PHE
116
n
116
PHE
116
A
GLU
117
n
117
GLU
117
A
LEU
118
n
118
LEU
118
A
ASP
119
n
119
ASP
119
A
ILE
120
n
120
ILE
120
A
PRO
121
n
121
PRO
121
A
GLY
122
n
122
GLY
122
A
LYS
123
n
123
LYS
123
A
ASP
124
n
124
ASP
124
A
LEU
125
n
125
LEU
125
A
ASP
126
n
126
ASP
126
A
ASN
127
n
127
ASN
127
A
ILE
128
n
128
ILE
128
A
TYR
129
n
129
TYR
129
A
LEU
130
n
130
LEU
130
A
MET
131
n
131
MET
131
A
ARG
132
n
132
ARG
132
A
GLY
133
n
133
GLY
133
A
ARG
134
n
134
ARG
134
A
GLN
135
n
135
GLN
135
A
TRP
136
n
136
TRP
136
A
ALA
137
n
137
ALA
137
A
ILE
138
n
138
ILE
138
A
LYS
139
n
139
LYS
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
GLN
142
n
142
GLN
142
A
LYS
143
n
143
LYS
143
A
THR
144
n
144
THR
144
A
VAL
145
n
145
VAL
145
A
ASP
146
n
146
ASP
146
A
PRO
147
n
147
PRO
147
A
GLU
148
n
148
GLU
148
A
VAL
149
n
149
VAL
149
A
ASN
150
n
150
ASN
150
A
ASN
151
n
151
ASN
151
A
VAL
152
n
152
VAL
152
A
VAL
153
n
153
VAL
153
A
VAL
154
n
154
VAL
154
A
ILE
155
n
155
ILE
155
A
GLY
156
n
156
GLY
156
A
SER
157
n
157
SER
157
A
GLY
158
n
158
GLY
158
A
TYR
159
n
159
TYR
159
A
ILE
160
n
160
ILE
160
A
GLY
161
n
161
GLY
161
A
ILE
162
n
162
ILE
162
A
GLU
163
n
163
GLU
163
A
ALA
164
n
164
ALA
164
A
ALA
165
n
165
ALA
165
A
GLU
166
n
166
GLU
166
A
ALA
167
n
167
ALA
167
A
PHE
168
n
168
PHE
168
A
ALA
169
n
169
ALA
169
A
LYS
170
n
170
LYS
170
A
ALA
171
n
171
ALA
171
A
GLY
172
n
172
GLY
172
A
LYS
173
n
173
LYS
173
A
LYS
174
n
174
LYS
174
A
VAL
175
n
175
VAL
175
A
THR
176
n
176
THR
176
A
VAL
177
n
177
VAL
177
A
ILE
178
n
178
ILE
178
A
ASP
179
n
179
ASP
179
A
ILE
180
n
180
ILE
180
A
LEU
181
n
181
LEU
181
A
ASP
182
n
182
ASP
182
A
ARG
183
n
183
ARG
183
A
PRO
184
n
184
PRO
184
A
LEU
185
n
185
LEU
185
A
GLY
186
n
186
GLY
186
A
VAL
187
n
187
VAL
187
A
TYR
188
n
188
TYR
188
A
LEU
189
n
189
LEU
189
A
ASP
190
n
190
ASP
190
A
LYS
191
n
191
LYS
191
A
GLU
192
n
192
GLU
192
A
PHE
193
n
193
PHE
193
A
THR
194
n
194
THR
194
A
ASP
195
n
195
ASP
195
A
VAL
196
n
196
VAL
196
A
LEU
197
n
197
LEU
197
A
THR
198
n
198
THR
198
A
GLU
199
n
199
GLU
199
A
GLU
200
n
200
GLU
200
A
MET
201
n
201
MET
201
A
GLU
202
n
202
GLU
202
A
ALA
203
n
203
ALA
203
A
ASN
204
n
204
ASN
204
A
ASN
205
n
205
ASN
205
A
ILE
206
n
206
ILE
206
A
THR
207
n
207
THR
207
A
ILE
208
n
208
ILE
208
A
ALA
209
n
209
ALA
209
A
THR
210
n
210
THR
210
A
GLY
211
n
211
GLY
211
A
GLU
212
n
212
GLU
212
A
THR
213
n
213
THR
213
A
VAL
214
n
214
VAL
214
A
GLU
215
n
215
GLU
215
A
ARG
216
n
216
ARG
216
A
TYR
217
n
217
TYR
217
A
GLU
218
n
218
GLU
218
A
GLY
219
n
219
GLY
219
A
ASP
220
n
220
ASP
220
A
GLY
221
n
221
GLY
221
A
ARG
222
n
222
ARG
222
A
VAL
223
n
223
VAL
223
A
GLN
224
n
224
GLN
224
A
LYS
225
n
225
LYS
225
A
VAL
226
n
226
VAL
226
A
VAL
227
n
227
VAL
227
A
THR
228
n
228
THR
228
A
ASP
229
n
229
ASP
229
A
LYS
230
n
230
LYS
230
A
ASN
231
n
231
ASN
231
A
ALA
232
n
232
ALA
232
A
TYR
233
n
233
TYR
233
A
ASP
234
n
234
ASP
234
A
ALA
235
n
235
ALA
235
A
ASP
236
n
236
ASP
236
A
LEU
237
n
237
LEU
237
A
VAL
238
n
238
VAL
238
A
VAL
239
n
239
VAL
239
A
VAL
240
n
240
VAL
240
A
ALA
241
n
241
ALA
241
A
VAL
242
n
242
VAL
242
A
GLY
243
n
243
GLY
243
A
VAL
244
n
244
VAL
244
A
ARG
245
n
245
ARG
245
A
PRO
246
n
246
PRO
246
A
ASN
247
n
247
ASN
247
A
THR
248
n
248
THR
248
A
ALA
249
n
249
ALA
249
A
TRP
250
n
250
TRP
250
A
LEU
251
n
251
LEU
251
A
LYS
252
n
252
LYS
252
A
GLY
253
n
253
GLY
253
A
THR
254
n
254
THR
254
A
LEU
255
n
255
LEU
255
A
GLU
256
n
256
GLU
256
A
LEU
257
n
257
LEU
257
A
HIS
258
n
258
HIS
258
A
PRO
259
n
259
PRO
259
A
ASN
260
n
260
ASN
260
A
GLY
261
n
261
GLY
261
A
LEU
262
n
262
LEU
262
A
ILE
263
n
263
ILE
263
A
LYS
264
n
264
LYS
264
A
THR
265
n
265
THR
265
A
ASP
266
n
266
ASP
266
A
GLU
267
n
267
GLU
267
A
TYR
268
n
268
TYR
268
A
MET
269
n
269
MET
269
A
ARG
270
n
270
ARG
270
A
THR
271
n
271
THR
271
A
SER
272
n
272
SER
272
A
GLU
273
n
273
GLU
273
A
PRO
274
n
274
PRO
274
A
ASP
275
n
275
ASP
275
A
VAL
276
n
276
VAL
276
A
PHE
277
n
277
PHE
277
A
ALA
278
n
278
ALA
278
A
VAL
279
n
279
VAL
279
A
GLY
280
n
280
GLY
280
A
ASP
281
n
281
ASP
281
A
ALA
282
n
282
ALA
282
A
THR
283
n
283
THR
283
A
LEU
284
n
284
LEU
284
A
ILE
285
n
285
ILE
285
A
LYS
286
n
286
LYS
286
A
TYR
287
n
287
TYR
287
A
ASN
288
n
288
ASN
288
A
PRO
289
n
289
PRO
289
A
ALA
290
n
290
ALA
290
A
ASP
291
n
291
ASP
291
A
THR
292
n
292
THR
292
A
GLU
293
n
293
GLU
293
A
VAL
294
n
294
VAL
294
A
ASN
295
n
295
ASN
295
A
ILE
296
n
296
ILE
296
A
ALA
297
n
297
ALA
297
A
LEU
298
n
298
LEU
298
A
ALA
299
n
299
ALA
299
A
THR
300
n
300
THR
300
A
ASN
301
n
301
ASN
301
A
ALA
302
n
302
ALA
302
A
MET
303
n
303
MET
303
A
LYS
304
n
304
LYS
304
A
GLN
305
n
305
GLN
305
A
GLY
306
n
306
GLY
306
A
ARG
307
n
307
ARG
307
A
PHE
308
n
308
PHE
308
A
ALA
309
n
309
ALA
309
A
VAL
310
n
310
VAL
310
A
LYS
311
n
311
LYS
311
A
ASN
312
n
312
ASN
312
A
LEU
313
n
313
LEU
313
A
GLU
314
n
314
GLU
314
A
GLU
315
n
315
GLU
315
A
PRO
316
n
316
PRO
316
A
VAL
317
n
317
VAL
317
A
LYS
318
n
318
LYS
318
A
PRO
319
n
319
PRO
319
A
PHE
320
n
320
PHE
320
A
PRO
321
n
321
PRO
321
A
GLY
322
n
322
GLY
322
A
VAL
323
n
323
VAL
323
A
GLN
324
n
324
GLN
324
A
GLY
325
n
325
GLY
325
A
SER
326
n
326
SER
326
A
SER
327
n
327
SER
327
A
GLY
328
n
328
GLY
328
A
LEU
329
n
329
LEU
329
A
ALA
330
n
330
ALA
330
A
VAL
331
n
331
VAL
331
A
PHE
332
n
332
PHE
332
A
ASP
333
n
333
ASP
333
A
TYR
334
n
334
TYR
334
A
LYS
335
n
335
LYS
335
A
PHE
336
n
336
PHE
336
A
ALA
337
n
337
ALA
337
A
SER
338
n
338
SER
338
A
THR
339
n
339
THR
339
A
GLY
340
n
340
GLY
340
A
ILE
341
n
341
ILE
341
A
ASN
342
n
342
ASN
342
A
GLU
343
n
343
GLU
343
A
VAL
344
n
344
VAL
344
A
MET
345
n
345
MET
345
A
ALA
346
n
346
ALA
346
A
GLN
347
n
347
GLN
347
A
LYS
348
n
348
LYS
348
A
LEU
349
n
349
LEU
349
A
GLY
350
n
350
GLY
350
A
LYS
351
n
351
LYS
351
A
GLU
352
n
352
GLU
352
A
THR
353
n
353
THR
353
A
LYS
354
n
354
LYS
354
A
ALA
355
n
355
ALA
355
A
VAL
356
n
356
VAL
356
A
THR
357
n
357
THR
357
A
VAL
358
n
358
VAL
358
A
VAL
359
n
359
VAL
359
A
GLU
360
n
360
GLU
360
A
ASP
361
n
361
ASP
361
A
TYR
362
n
362
TYR
362
A
LEU
363
n
363
LEU
363
A
MET
364
n
364
MET
364
A
ASP
365
n
365
ASP
365
A
PHE
366
n
366
PHE
366
A
ASN
367
n
367
ASN
367
A
PRO
368
n
368
PRO
368
A
ASP
369
n
369
ASP
369
A
LYS
370
n
370
LYS
370
A
GLN
371
n
371
GLN
371
A
LYS
372
n
372
LYS
372
A
ALA
373
n
373
ALA
373
A
TRP
374
n
374
TRP
374
A
PHE
375
n
375
PHE
375
A
LYS
376
n
376
LYS
376
A
LEU
377
n
377
LEU
377
A
VAL
378
n
378
VAL
378
A
TYR
379
n
379
TYR
379
A
ASP
380
n
380
ASP
380
A
PRO
381
n
381
PRO
381
A
GLU
382
n
382
GLU
382
A
THR
383
n
383
THR
383
A
THR
384
n
384
THR
384
A
GLN
385
n
385
GLN
385
A
ILE
386
n
386
ILE
386
A
LEU
387
n
387
LEU
387
A
GLY
388
n
388
GLY
388
A
ALA
389
n
389
ALA
389
A
GLN
390
n
390
GLN
390
A
LEU
391
n
391
LEU
391
A
MET
392
n
392
MET
392
A
SER
393
n
393
SER
393
A
LYS
394
n
394
LYS
394
A
ALA
395
n
395
ALA
395
A
ASP
396
n
396
ASP
396
A
LEU
397
n
397
LEU
397
A
THR
398
n
398
THR
398
A
ALA
399
n
399
ALA
399
A
ASN
400
n
400
ASN
400
A
ILE
401
n
401
ILE
401
A
ASN
402
n
402
ASN
402
A
ALA
403
n
403
ALA
403
A
ILE
404
n
404
ILE
404
A
SER
405
n
405
SER
405
A
LEU
406
n
406
LEU
406
A
ALA
407
n
407
ALA
407
A
ILE
408
n
408
ILE
408
A
GLN
409
n
409
GLN
409
A
ALA
410
n
410
ALA
410
A
LYS
411
n
411
LYS
411
A
MET
412
n
412
MET
412
A
THR
413
n
413
THR
413
A
ILE
414
n
414
ILE
414
A
GLU
415
n
415
GLU
415
A
ASP
416
n
416
ASP
416
A
LEU
417
n
417
LEU
417
A
ALA
418
n
418
ALA
418
A
TYR
419
n
419
TYR
419
A
ALA
420
n
420
ALA
420
A
ASP
421
n
421
ASP
421
A
PHE
422
n
422
PHE
422
A
PHE
423
n
423
PHE
423
A
PHE
424
n
424
PHE
424
A
GLN
425
n
425
GLN
425
A
PRO
426
n
426
PRO
426
A
ALA
427
n
427
ALA
427
A
PHE
428
n
428
PHE
428
A
ASP
429
n
429
ASP
429
A
LYS
430
n
430
LYS
430
A
PRO
431
n
431
PRO
431
A
TRP
432
n
432
TRP
432
A
ASN
433
n
433
ASN
433
A
ILE
434
n
434
ILE
434
A
ILE
435
n
435
ILE
435
A
ASN
436
n
436
ASN
436
A
THR
437
n
437
THR
437
A
ALA
438
n
438
ALA
438
A
ALA
439
n
439
ALA
439
A
LEU
440
n
440
LEU
440
A
GLU
441
n
441
GLU
441
A
ALA
442
n
442
ALA
442
A
VAL
443
n
443
VAL
443
A
LYS
444
n
444
LYS
444
A
GLN
445
n
445
GLN
445
A
GLU
446
n
446
GLU
446
A
ARG
447
n
447
ARG
447
A
author_defined_assembly
4
tetrameric
software_defined_assembly
PISA,PQS
2
dimeric
8960
-54
32580
A
CSX
42
S-OXY CYSTEINE
A
CSX
42
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_666
-y+1,-x+1,-z+1
crystal symmetry operation
155.1800000000
155.1800000000
189.4100000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
10_665
-x+1,-y+1,z
crystal symmetry operation
155.1800000000
155.1800000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
189.4100000000
A
N
ASN
72
A
N
ASN
72
A
O
ILE
28
A
O
ILE
28
A
O
GLU
27
A
O
GLU
27
A
N
VAL
3
A
N
VAL
3
A
N
ILE
4
A
N
ILE
4
A
O
LYS
106
A
O
LYS
106
A
N
ILE
109
A
N
ILE
109
A
O
PHE
277
A
O
PHE
277
A
N
GLN
83
A
N
GLN
83
A
O
GLN
88
A
O
GLN
88
A
N
VAL
91
A
N
VAL
91
A
O
ARG
100
A
O
ARG
100
A
N
VAL
114
A
N
VAL
114
A
O
ARG
245
A
O
ARG
245
A
N
TYR
129
A
N
TYR
129
A
O
VAL
238
A
O
VAL
238
A
N
LEU
237
A
N
LEU
237
A
O
ASN
151
A
O
ASN
151
A
N
VAL
152
A
N
VAL
152
A
O
LYS
174
A
O
LYS
174
A
N
VAL
177
A
N
VAL
177
A
O
THR
207
A
O
THR
207
A
N
GLU
218
A
N
GLU
218
A
O
LYS
225
A
O
LYS
225
A
O
VAL
226
A
O
VAL
226
A
N
TYR
233
A
N
TYR
233
A
N
TYR
287
A
N
TYR
287
A
O
THR
292
A
O
THR
292
A
N
VAL
331
A
N
VAL
331
A
O
TYR
334
A
O
TYR
334
A
O
THR
339
A
O
THR
339
A
N
ALA
389
A
N
ALA
389
A
O
MET
392
A
O
MET
392
A
N
TRP
374
A
N
TRP
374
A
N
TYR
379
A
N
TYR
379
A
O
LYS
354
A
O
LYS
354
1
6.27
0.80
106.30
112.57
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
30
30
30
N
1
-5.57
0.80
107.30
101.73
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
30
30
30
N
1
3.91
0.50
120.30
124.21
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
132
132
132
N
1
-3.44
0.50
120.30
116.86
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
132
132
132
N
1
3.14
0.50
120.30
123.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
134
134
134
N
1
6.31
0.80
106.30
112.61
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
136
136
136
N
1
-6.07
0.80
107.30
101.23
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
136
136
136
N
1
4.17
0.50
120.30
124.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
183
183
183
N
1
-3.40
0.50
120.30
116.90
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
183
183
183
N
1
6.06
0.80
106.30
112.36
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
250
250
250
N
1
-5.84
0.80
107.30
101.46
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
250
250
250
N
1
6.07
0.80
106.30
112.37
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
374
374
374
N
1
-5.96
0.80
107.30
101.34
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
374
374
374
N
1
7.17
0.80
106.30
113.47
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
432
432
432
N
1
-6.35
0.80
107.30
100.95
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
432
432
432
N
1
3.13
0.50
120.30
123.43
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
447
447
447
N
1
A
A
NE2
CD2
HIS
HIS
10
10
-0.069
0.011
1.373
1.304
N
1
A
A
NE2
CD2
HIS
HIS
23
23
-0.071
0.011
1.373
1.302
N
1
A
A
NE2
CD2
HIS
HIS
87
87
-0.070
0.011
1.373
1.303
N
1
A
A
NE2
CD2
HIS
HIS
258
258
-0.066
0.011
1.373
1.307
N
1
A
A
O
N3
PHE
FAD
424
448
2.11
1_555
15_556
1
A
A
NE2
O
GLN
HOH
425
506
2.16
1_555
15_556
1
A
A
O
O
HOH
HOH
523
550
2.17
1_555
15_556
1
A
HIS
23
-143.08
55.93
1
A
ASN
127
77.88
35.04
1
A
THR
292
-128.64
-160.97
1
A
PRO
316
-66.98
79.64
1
A
PHE
332
53.22
-124.60
1
A
ASN
433
-65.42
-179.90
0.2340000
0.1960000
0.2810000
0.2430000
2.45
50.0
1821
36614
36614
5
86
Random
1
X-PLOR FreeR
2
2
Engh & Huber
0.26
2.45
50.0
131
3672
53
0
3488
0.016
3.0
1.07
10.2
2.45
99.
1F8W
42662
36615
2
2
0.0550000
1
9.5
5.4
85.8
0.3630000
2.45
2.6
0.3900000
1
3.5
71.1
model building
X-PLOR
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M
1
N
N
2
N
N
3
N
N
FUNCTIONAL MOLECULE IS A HOMOTETRAMER
A
SER
9
A
SER
9
HELX_P
A
HIS
23
A
HIS
23
1
1
15
A
LEU
40
A
LEU
40
HELX_P
A
CSX
42
A
CSX
42
5
2
3
A
GLY
43
A
GLY
43
HELX_P
A
GLU
49
A
GLU
49
1
3
7
A
ASP
54
A
ASP
54
HELX_P
A
VAL
58
A
VAL
58
5
4
5
A
THR
62
A
THR
62
HELX_P
A
SER
68
A
SER
68
1
5
7
A
ARG
132
A
ARG
132
HELX_P
A
VAL
145
A
VAL
145
1
6
14
A
GLY
158
A
GLY
158
HELX_P
A
ALA
171
A
ALA
171
1
7
14
A
ASP
190
A
ASP
190
HELX_P
A
ALA
203
A
ALA
203
1
8
14
A
THR
248
A
THR
248
HELX_P
A
LEU
251
A
LEU
251
5
9
4
A
ASN
288
A
ASN
288
HELX_P
A
ASP
291
A
ASP
291
5
10
4
A
LEU
298
A
LEU
298
HELX_P
A
ASN
312
A
ASN
312
1
11
15
A
ASN
342
A
ASN
342
HELX_P
A
GLY
350
A
GLY
350
1
12
9
A
ALA
399
A
ALA
399
HELX_P
A
ALA
410
A
ALA
410
1
13
12
A
THR
413
A
THR
413
HELX_P
A
TYR
419
A
TYR
419
1
14
7
A
ASN
433
A
ASN
433
HELX_P
A
GLU
446
A
GLU
446
1
15
14
covale
1.346
both
A
SER
41
A
C
SER
41
1_555
A
CSX
42
A
N
CSX
42
1_555
covale
1.343
both
A
CSX
42
A
C
CSX
42
1_555
A
GLY
43
A
N
GLY
43
1_555
OXIDOREDUCTASE
Interface, FAD, NAD-binding domains, OXIDOREDUCTASE
NAPE_ENTFA
UNP
1
1
P37062
1
447
1F8W
1
447
P37062
A
1
1
447
1
ARG
engineered mutation
MET
303
1F8W
A
P37062
UNP
303
303
5
3
2
5
3
2
5
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
71
A
VAL
71
A
PHE
74
A
PHE
74
A
GLU
27
A
GLU
27
A
TYR
31
A
TYR
31
A
LYS
2
A
LYS
2
A
LEU
6
A
LEU
6
A
LYS
106
A
LYS
106
A
ILE
109
A
ILE
109
A
VAL
276
A
VAL
276
A
ALA
278
A
ALA
278
A
THR
77
A
THR
77
A
GLN
83
A
GLN
83
A
GLN
88
A
GLN
88
A
ASP
93
A
ASP
93
A
GLU
99
A
GLU
99
A
ASN
103
A
ASN
103
A
ALA
113
A
ALA
113
A
PRO
115
A
PRO
115
A
VAL
244
A
VAL
244
A
PRO
246
A
PRO
246
A
ILE
128
A
ILE
128
A
TYR
129
A
TYR
129
A
LEU
237
A
LEU
237
A
VAL
240
A
VAL
240
A
ASN
151
A
ASN
151
A
ILE
155
A
ILE
155
A
LYS
174
A
LYS
174
A
ILE
178
A
ILE
178
A
ILE
206
A
ILE
206
A
ALA
209
A
ALA
209
A
VAL
214
A
VAL
214
A
GLU
218
A
GLU
218
A
LYS
225
A
LYS
225
A
THR
228
A
THR
228
A
ALA
232
A
ALA
232
A
ASP
234
A
ASP
234
A
ILE
285
A
ILE
285
A
TYR
287
A
TYR
287
A
THR
292
A
THR
292
A
VAL
294
A
VAL
294
A
SER
327
A
SER
327
A
VAL
331
A
VAL
331
A
TYR
334
A
TYR
334
A
GLY
340
A
GLY
340
A
ILE
386
A
ILE
386
A
SER
393
A
SER
393
A
LYS
372
A
LYS
372
A
TYR
379
A
TYR
379
A
LYS
354
A
LYS
354
A
ASP
361
A
ASP
361
BINDING SITE FOR RESIDUE FAD A 448
A
FAD
448
Software
32
A
LEU
6
A
LEU
6
32
1_555
A
GLY
7
A
GLY
7
32
1_555
A
SER
9
A
SER
9
32
1_555
A
HIS
10
A
HIS
10
32
1_555
A
GLY
11
A
GLY
11
32
1_555
A
GLU
32
A
GLU
32
32
1_555
A
LYS
33
A
LYS
33
32
1_555
A
SER
41
A
SER
41
32
1_555
A
CSX
42
A
CSX
42
32
1_555
A
THR
77
A
THR
77
32
1_555
A
GLU
78
A
GLU
78
32
1_555
A
ILE
79
A
ILE
79
32
1_555
A
SER
110
A
SER
110
32
1_555
A
PRO
111
A
PRO
111
32
1_555
A
GLY
112
A
GLY
112
32
1_555
A
ALA
113
A
ALA
113
32
1_555
A
MET
131
A
MET
131
32
1_555
A
ARG
132
A
ARG
132
32
1_555
A
TYR
159
A
TYR
159
32
1_555
A
ASN
247
A
ASN
247
32
1_555
A
GLY
280
A
GLY
280
32
1_555
A
ASP
281
A
ASP
281
32
1_555
A
ALA
297
A
ALA
297
32
1_555
A
LEU
298
A
LEU
298
32
1_555
A
ALA
299
A
ALA
299
32
1_555
A
THR
300
A
THR
300
32
1_555
A
PHE
424
A
PHE
424
32
15_556
A
GLN
425
A
GLN
425
32
15_556
A
HOH
451
C
HOH
32
1_555
A
HOH
492
C
HOH
32
1_555
A
HOH
506
C
HOH
32
1_555
A
HOH
567
C
HOH
32
1_555
98
I 41 2 2