0.006444 0.000000 0.000000 0.000000 0.006444 0.000000 0.000000 0.000000 0.005280 0.00000 0.00000 0.00000 Yeh, J.I. Claiborne, A. Hol, W.G.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90 90 90 155.18 155.18 189.41 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O3 S 137.158 n S-OXY CYSTEINE L-peptide linking C27 H33 N9 O15 P2 785.550 FLAVIN-ADENINE DINUCLEOTIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 39 10353 10364 10.1021/bi000553m 10956025 Analysis of the kinetic and redox properties of the NADH peroxidase R303M mutant: correlation with the crystal structure. 2000 US Biochemistry BICHAW 0033 0006-2960 35 9951 9957 10.1021/bi961037s Structure of the Native Cysteine-sulfenic Acid Redox Center of Enterococcal NADH Peroxidase Refined at 2.8 A Resolution 1996 10.2210/pdb1f8w/pdb pdb_00001f8w 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 IMAGE PLATE 1996-08-08 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.08 1.0 BL7-1 SSRL 1.08 SYNCHROTRON SSRL BEAMLINE BL7-1 49593.230 NADH PEROXIDASE 1.11.1.1 ARG 303 TO MET 303 1 man polymer 785.550 FLAVIN-ADENINE DINUCLEOTIDE 1 syn non-polymer 18.015 water 131 nat water no yes MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS(CSX)GMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSN TEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIG SGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDAD LVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNLEEP VKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKAD LTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQER MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI GIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNLEEPVKPF PGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTAN INAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQER A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Enterococcus Escherichia sample 1351 Enterococcus faecalis 562 Escherichia coli PLASMID PR303M 1 2.8 VAPOR DIFFUSION, HANGING DROP 7.2 2% PEG 400, 2.0 M (NH4)2SO4, 100 mM Na Hepes, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 296K 296 citation_author citation_author database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Database references Database references Database references Derived calculations 1 0 2001-02-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-24 1 4 2018-01-31 1 5 2021-11-03 _citation_author.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Active, Native Form With Cysteine-Sulfenic Acid Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Cys 42 Replaced By Ala (C42A) Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Cys 42 Replaced By Ser (C42S) Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Leu 40 Replaced By Cys (L40C) Nadh Peroxidase (Npx) (E.C. 1.11.1.1) Mutant With Ser 41 Replaced By Cys (S41C) Nadh Peroxidase (E.C. 1.11.1.1) Non-Active Form With Cys 42 Oxidized To A Sulfonic Acid RCSB Y RCSB 2000-07-05 REL FAD FLAVIN-ADENINE DINUCLEOTIDE HOH water FAD 448 2 FAD FAD 448 A HOH 1 3 HOH HOH 449 A HOH 2 3 HOH HOH 450 A HOH 3 3 HOH HOH 451 A HOH 4 3 HOH HOH 452 A HOH 5 3 HOH HOH 453 A HOH 6 3 HOH HOH 454 A HOH 7 3 HOH HOH 455 A HOH 8 3 HOH HOH 456 A HOH 9 3 HOH HOH 457 A HOH 10 3 HOH HOH 458 A HOH 11 3 HOH HOH 459 A HOH 12 3 HOH HOH 460 A HOH 13 3 HOH HOH 461 A HOH 14 3 HOH HOH 462 A HOH 15 3 HOH HOH 463 A HOH 16 3 HOH HOH 464 A HOH 17 3 HOH HOH 465 A HOH 18 3 HOH HOH 466 A HOH 19 3 HOH HOH 467 A HOH 20 3 HOH HOH 468 A HOH 21 3 HOH HOH 469 A HOH 22 3 HOH HOH 470 A HOH 23 3 HOH HOH 471 A HOH 24 3 HOH HOH 472 A HOH 25 3 HOH HOH 473 A HOH 26 3 HOH HOH 474 A HOH 27 3 HOH HOH 475 A HOH 28 3 HOH HOH 476 A HOH 29 3 HOH HOH 477 A HOH 30 3 HOH HOH 478 A HOH 31 3 HOH HOH 479 A HOH 32 3 HOH HOH 480 A HOH 33 3 HOH HOH 481 A HOH 34 3 HOH HOH 482 A HOH 35 3 HOH HOH 483 A HOH 36 3 HOH HOH 484 A HOH 37 3 HOH HOH 485 A HOH 38 3 HOH HOH 486 A HOH 39 3 HOH HOH 487 A HOH 40 3 HOH HOH 488 A HOH 41 3 HOH HOH 489 A HOH 42 3 HOH HOH 490 A HOH 43 3 HOH HOH 491 A HOH 44 3 HOH HOH 492 A HOH 45 3 HOH HOH 493 A HOH 46 3 HOH HOH 494 A HOH 47 3 HOH HOH 495 A HOH 48 3 HOH HOH 496 A HOH 49 3 HOH HOH 497 A HOH 50 3 HOH HOH 498 A HOH 51 3 HOH HOH 499 A HOH 52 3 HOH HOH 500 A HOH 53 3 HOH HOH 501 A HOH 54 3 HOH HOH 502 A HOH 55 3 HOH HOH 503 A HOH 56 3 HOH HOH 504 A HOH 57 3 HOH HOH 505 A HOH 58 3 HOH HOH 506 A HOH 59 3 HOH HOH 507 A HOH 60 3 HOH HOH 508 A HOH 61 3 HOH HOH 509 A HOH 62 3 HOH HOH 510 A HOH 63 3 HOH HOH 511 A HOH 64 3 HOH HOH 512 A HOH 65 3 HOH HOH 513 A HOH 66 3 HOH HOH 514 A HOH 67 3 HOH HOH 515 A HOH 68 3 HOH HOH 516 A HOH 69 3 HOH HOH 517 A HOH 70 3 HOH HOH 518 A HOH 71 3 HOH HOH 519 A HOH 72 3 HOH HOH 520 A HOH 73 3 HOH HOH 521 A HOH 74 3 HOH HOH 522 A HOH 75 3 HOH HOH 523 A HOH 76 3 HOH HOH 524 A HOH 77 3 HOH HOH 525 A HOH 78 3 HOH HOH 526 A HOH 79 3 HOH HOH 527 A HOH 80 3 HOH HOH 528 A HOH 81 3 HOH HOH 529 A HOH 82 3 HOH HOH 530 A HOH 83 3 HOH HOH 531 A HOH 84 3 HOH HOH 532 A HOH 85 3 HOH HOH 533 A HOH 86 3 HOH HOH 534 A HOH 87 3 HOH HOH 535 A HOH 88 3 HOH HOH 536 A HOH 89 3 HOH HOH 537 A HOH 90 3 HOH HOH 538 A HOH 91 3 HOH HOH 539 A HOH 92 3 HOH HOH 540 A HOH 93 3 HOH HOH 541 A HOH 94 3 HOH HOH 542 A HOH 95 3 HOH HOH 543 A HOH 96 3 HOH HOH 544 A HOH 97 3 HOH HOH 545 A HOH 98 3 HOH HOH 546 A HOH 99 3 HOH HOH 547 A HOH 100 3 HOH HOH 548 A HOH 101 3 HOH HOH 549 A HOH 102 3 HOH HOH 550 A HOH 103 3 HOH HOH 551 A HOH 104 3 HOH HOH 552 A HOH 105 3 HOH HOH 553 A HOH 106 3 HOH HOH 554 A HOH 107 3 HOH HOH 555 A HOH 108 3 HOH HOH 556 A HOH 109 3 HOH HOH 557 A HOH 110 3 HOH HOH 558 A HOH 111 3 HOH HOH 559 A HOH 112 3 HOH HOH 560 A HOH 113 3 HOH HOH 561 A HOH 114 3 HOH HOH 562 A HOH 115 3 HOH HOH 563 A HOH 116 3 HOH HOH 564 A HOH 117 3 HOH HOH 565 A HOH 118 3 HOH HOH 566 A HOH 119 3 HOH HOH 567 A HOH 120 3 HOH HOH 568 A HOH 121 3 HOH HOH 569 A HOH 122 3 HOH HOH 570 A HOH 123 3 HOH HOH 571 A HOH 124 3 HOH HOH 572 A HOH 125 3 HOH HOH 573 A HOH 126 3 HOH HOH 574 A HOH 127 3 HOH HOH 575 A HOH 128 3 HOH HOH 576 A HOH 129 3 HOH HOH 577 A HOH 130 3 HOH HOH 578 A HOH 131 3 HOH HOH 579 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A VAL 3 n 3 VAL 3 A ILE 4 n 4 ILE 4 A VAL 5 n 5 VAL 5 A LEU 6 n 6 LEU 6 A GLY 7 n 7 GLY 7 A SER 8 n 8 SER 8 A SER 9 n 9 SER 9 A HIS 10 n 10 HIS 10 A GLY 11 n 11 GLY 11 A GLY 12 n 12 GLY 12 A TYR 13 n 13 TYR 13 A GLU 14 n 14 GLU 14 A ALA 15 n 15 ALA 15 A VAL 16 n 16 VAL 16 A GLU 17 n 17 GLU 17 A GLU 18 n 18 GLU 18 A LEU 19 n 19 LEU 19 A LEU 20 n 20 LEU 20 A ASN 21 n 21 ASN 21 A LEU 22 n 22 LEU 22 A HIS 23 n 23 HIS 23 A PRO 24 n 24 PRO 24 A ASP 25 n 25 ASP 25 A ALA 26 n 26 ALA 26 A GLU 27 n 27 GLU 27 A ILE 28 n 28 ILE 28 A GLN 29 n 29 GLN 29 A TRP 30 n 30 TRP 30 A TYR 31 n 31 TYR 31 A GLU 32 n 32 GLU 32 A LYS 33 n 33 LYS 33 A GLY 34 n 34 GLY 34 A ASP 35 n 35 ASP 35 A PHE 36 n 36 PHE 36 A ILE 37 n 37 ILE 37 A SER 38 n 38 SER 38 A PHE 39 n 39 PHE 39 A LEU 40 n 40 LEU 40 A SER 41 n 41 SER 41 A CYS 42 n 42 CSX 42 A GLY 43 n 43 GLY 43 A MET 44 n 44 MET 44 A GLN 45 n 45 GLN 45 A LEU 46 n 46 LEU 46 A TYR 47 n 47 TYR 47 A LEU 48 n 48 LEU 48 A GLU 49 n 49 GLU 49 A GLY 50 n 50 GLY 50 A LYS 51 n 51 LYS 51 A VAL 52 n 52 VAL 52 A LYS 53 n 53 LYS 53 A ASP 54 n 54 ASP 54 A VAL 55 n 55 VAL 55 A ASN 56 n 56 ASN 56 A SER 57 n 57 SER 57 A VAL 58 n 58 VAL 58 A ARG 59 n 59 ARG 59 A TYR 60 n 60 TYR 60 A MET 61 n 61 MET 61 A THR 62 n 62 THR 62 A GLY 63 n 63 GLY 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A MET 66 n 66 MET 66 A GLU 67 n 67 GLU 67 A SER 68 n 68 SER 68 A ARG 69 n 69 ARG 69 A GLY 70 n 70 GLY 70 A VAL 71 n 71 VAL 71 A ASN 72 n 72 ASN 72 A VAL 73 n 73 VAL 73 A PHE 74 n 74 PHE 74 A SER 75 n 75 SER 75 A ASN 76 n 76 ASN 76 A THR 77 n 77 THR 77 A GLU 78 n 78 GLU 78 A ILE 79 n 79 ILE 79 A THR 80 n 80 THR 80 A ALA 81 n 81 ALA 81 A ILE 82 n 82 ILE 82 A GLN 83 n 83 GLN 83 A PRO 84 n 84 PRO 84 A LYS 85 n 85 LYS 85 A GLU 86 n 86 GLU 86 A HIS 87 n 87 HIS 87 A GLN 88 n 88 GLN 88 A VAL 89 n 89 VAL 89 A THR 90 n 90 THR 90 A VAL 91 n 91 VAL 91 A LYS 92 n 92 LYS 92 A ASP 93 n 93 ASP 93 A LEU 94 n 94 LEU 94 A VAL 95 n 95 VAL 95 A SER 96 n 96 SER 96 A GLY 97 n 97 GLY 97 A GLU 98 n 98 GLU 98 A GLU 99 n 99 GLU 99 A ARG 100 n 100 ARG 100 A VAL 101 n 101 VAL 101 A GLU 102 n 102 GLU 102 A ASN 103 n 103 ASN 103 A TYR 104 n 104 TYR 104 A ASP 105 n 105 ASP 105 A LYS 106 n 106 LYS 106 A LEU 107 n 107 LEU 107 A ILE 108 n 108 ILE 108 A ILE 109 n 109 ILE 109 A SER 110 n 110 SER 110 A PRO 111 n 111 PRO 111 A GLY 112 n 112 GLY 112 A ALA 113 n 113 ALA 113 A VAL 114 n 114 VAL 114 A PRO 115 n 115 PRO 115 A PHE 116 n 116 PHE 116 A GLU 117 n 117 GLU 117 A LEU 118 n 118 LEU 118 A ASP 119 n 119 ASP 119 A ILE 120 n 120 ILE 120 A PRO 121 n 121 PRO 121 A GLY 122 n 122 GLY 122 A LYS 123 n 123 LYS 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A ASP 126 n 126 ASP 126 A ASN 127 n 127 ASN 127 A ILE 128 n 128 ILE 128 A TYR 129 n 129 TYR 129 A LEU 130 n 130 LEU 130 A MET 131 n 131 MET 131 A ARG 132 n 132 ARG 132 A GLY 133 n 133 GLY 133 A ARG 134 n 134 ARG 134 A GLN 135 n 135 GLN 135 A TRP 136 n 136 TRP 136 A ALA 137 n 137 ALA 137 A ILE 138 n 138 ILE 138 A LYS 139 n 139 LYS 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A GLN 142 n 142 GLN 142 A LYS 143 n 143 LYS 143 A THR 144 n 144 THR 144 A VAL 145 n 145 VAL 145 A ASP 146 n 146 ASP 146 A PRO 147 n 147 PRO 147 A GLU 148 n 148 GLU 148 A VAL 149 n 149 VAL 149 A ASN 150 n 150 ASN 150 A ASN 151 n 151 ASN 151 A VAL 152 n 152 VAL 152 A VAL 153 n 153 VAL 153 A VAL 154 n 154 VAL 154 A ILE 155 n 155 ILE 155 A GLY 156 n 156 GLY 156 A SER 157 n 157 SER 157 A GLY 158 n 158 GLY 158 A TYR 159 n 159 TYR 159 A ILE 160 n 160 ILE 160 A GLY 161 n 161 GLY 161 A ILE 162 n 162 ILE 162 A GLU 163 n 163 GLU 163 A ALA 164 n 164 ALA 164 A ALA 165 n 165 ALA 165 A GLU 166 n 166 GLU 166 A ALA 167 n 167 ALA 167 A PHE 168 n 168 PHE 168 A ALA 169 n 169 ALA 169 A LYS 170 n 170 LYS 170 A ALA 171 n 171 ALA 171 A GLY 172 n 172 GLY 172 A LYS 173 n 173 LYS 173 A LYS 174 n 174 LYS 174 A VAL 175 n 175 VAL 175 A THR 176 n 176 THR 176 A VAL 177 n 177 VAL 177 A ILE 178 n 178 ILE 178 A ASP 179 n 179 ASP 179 A ILE 180 n 180 ILE 180 A LEU 181 n 181 LEU 181 A ASP 182 n 182 ASP 182 A ARG 183 n 183 ARG 183 A PRO 184 n 184 PRO 184 A LEU 185 n 185 LEU 185 A GLY 186 n 186 GLY 186 A VAL 187 n 187 VAL 187 A TYR 188 n 188 TYR 188 A LEU 189 n 189 LEU 189 A ASP 190 n 190 ASP 190 A LYS 191 n 191 LYS 191 A GLU 192 n 192 GLU 192 A PHE 193 n 193 PHE 193 A THR 194 n 194 THR 194 A ASP 195 n 195 ASP 195 A VAL 196 n 196 VAL 196 A LEU 197 n 197 LEU 197 A THR 198 n 198 THR 198 A GLU 199 n 199 GLU 199 A GLU 200 n 200 GLU 200 A MET 201 n 201 MET 201 A GLU 202 n 202 GLU 202 A ALA 203 n 203 ALA 203 A ASN 204 n 204 ASN 204 A ASN 205 n 205 ASN 205 A ILE 206 n 206 ILE 206 A THR 207 n 207 THR 207 A ILE 208 n 208 ILE 208 A ALA 209 n 209 ALA 209 A THR 210 n 210 THR 210 A GLY 211 n 211 GLY 211 A GLU 212 n 212 GLU 212 A THR 213 n 213 THR 213 A VAL 214 n 214 VAL 214 A GLU 215 n 215 GLU 215 A ARG 216 n 216 ARG 216 A TYR 217 n 217 TYR 217 A GLU 218 n 218 GLU 218 A GLY 219 n 219 GLY 219 A ASP 220 n 220 ASP 220 A GLY 221 n 221 GLY 221 A ARG 222 n 222 ARG 222 A VAL 223 n 223 VAL 223 A GLN 224 n 224 GLN 224 A LYS 225 n 225 LYS 225 A VAL 226 n 226 VAL 226 A VAL 227 n 227 VAL 227 A THR 228 n 228 THR 228 A ASP 229 n 229 ASP 229 A LYS 230 n 230 LYS 230 A ASN 231 n 231 ASN 231 A ALA 232 n 232 ALA 232 A TYR 233 n 233 TYR 233 A ASP 234 n 234 ASP 234 A ALA 235 n 235 ALA 235 A ASP 236 n 236 ASP 236 A LEU 237 n 237 LEU 237 A VAL 238 n 238 VAL 238 A VAL 239 n 239 VAL 239 A VAL 240 n 240 VAL 240 A ALA 241 n 241 ALA 241 A VAL 242 n 242 VAL 242 A GLY 243 n 243 GLY 243 A VAL 244 n 244 VAL 244 A ARG 245 n 245 ARG 245 A PRO 246 n 246 PRO 246 A ASN 247 n 247 ASN 247 A THR 248 n 248 THR 248 A ALA 249 n 249 ALA 249 A TRP 250 n 250 TRP 250 A LEU 251 n 251 LEU 251 A LYS 252 n 252 LYS 252 A GLY 253 n 253 GLY 253 A THR 254 n 254 THR 254 A LEU 255 n 255 LEU 255 A GLU 256 n 256 GLU 256 A LEU 257 n 257 LEU 257 A HIS 258 n 258 HIS 258 A PRO 259 n 259 PRO 259 A ASN 260 n 260 ASN 260 A GLY 261 n 261 GLY 261 A LEU 262 n 262 LEU 262 A ILE 263 n 263 ILE 263 A LYS 264 n 264 LYS 264 A THR 265 n 265 THR 265 A ASP 266 n 266 ASP 266 A GLU 267 n 267 GLU 267 A TYR 268 n 268 TYR 268 A MET 269 n 269 MET 269 A ARG 270 n 270 ARG 270 A THR 271 n 271 THR 271 A SER 272 n 272 SER 272 A GLU 273 n 273 GLU 273 A PRO 274 n 274 PRO 274 A ASP 275 n 275 ASP 275 A VAL 276 n 276 VAL 276 A PHE 277 n 277 PHE 277 A ALA 278 n 278 ALA 278 A VAL 279 n 279 VAL 279 A GLY 280 n 280 GLY 280 A ASP 281 n 281 ASP 281 A ALA 282 n 282 ALA 282 A THR 283 n 283 THR 283 A LEU 284 n 284 LEU 284 A ILE 285 n 285 ILE 285 A LYS 286 n 286 LYS 286 A TYR 287 n 287 TYR 287 A ASN 288 n 288 ASN 288 A PRO 289 n 289 PRO 289 A ALA 290 n 290 ALA 290 A ASP 291 n 291 ASP 291 A THR 292 n 292 THR 292 A GLU 293 n 293 GLU 293 A VAL 294 n 294 VAL 294 A ASN 295 n 295 ASN 295 A ILE 296 n 296 ILE 296 A ALA 297 n 297 ALA 297 A LEU 298 n 298 LEU 298 A ALA 299 n 299 ALA 299 A THR 300 n 300 THR 300 A ASN 301 n 301 ASN 301 A ALA 302 n 302 ALA 302 A MET 303 n 303 MET 303 A LYS 304 n 304 LYS 304 A GLN 305 n 305 GLN 305 A GLY 306 n 306 GLY 306 A ARG 307 n 307 ARG 307 A PHE 308 n 308 PHE 308 A ALA 309 n 309 ALA 309 A VAL 310 n 310 VAL 310 A LYS 311 n 311 LYS 311 A ASN 312 n 312 ASN 312 A LEU 313 n 313 LEU 313 A GLU 314 n 314 GLU 314 A GLU 315 n 315 GLU 315 A PRO 316 n 316 PRO 316 A VAL 317 n 317 VAL 317 A LYS 318 n 318 LYS 318 A PRO 319 n 319 PRO 319 A PHE 320 n 320 PHE 320 A PRO 321 n 321 PRO 321 A GLY 322 n 322 GLY 322 A VAL 323 n 323 VAL 323 A GLN 324 n 324 GLN 324 A GLY 325 n 325 GLY 325 A SER 326 n 326 SER 326 A SER 327 n 327 SER 327 A GLY 328 n 328 GLY 328 A LEU 329 n 329 LEU 329 A ALA 330 n 330 ALA 330 A VAL 331 n 331 VAL 331 A PHE 332 n 332 PHE 332 A ASP 333 n 333 ASP 333 A TYR 334 n 334 TYR 334 A LYS 335 n 335 LYS 335 A PHE 336 n 336 PHE 336 A ALA 337 n 337 ALA 337 A SER 338 n 338 SER 338 A THR 339 n 339 THR 339 A GLY 340 n 340 GLY 340 A ILE 341 n 341 ILE 341 A ASN 342 n 342 ASN 342 A GLU 343 n 343 GLU 343 A VAL 344 n 344 VAL 344 A MET 345 n 345 MET 345 A ALA 346 n 346 ALA 346 A GLN 347 n 347 GLN 347 A LYS 348 n 348 LYS 348 A LEU 349 n 349 LEU 349 A GLY 350 n 350 GLY 350 A LYS 351 n 351 LYS 351 A GLU 352 n 352 GLU 352 A THR 353 n 353 THR 353 A LYS 354 n 354 LYS 354 A ALA 355 n 355 ALA 355 A VAL 356 n 356 VAL 356 A THR 357 n 357 THR 357 A VAL 358 n 358 VAL 358 A VAL 359 n 359 VAL 359 A GLU 360 n 360 GLU 360 A ASP 361 n 361 ASP 361 A TYR 362 n 362 TYR 362 A LEU 363 n 363 LEU 363 A MET 364 n 364 MET 364 A ASP 365 n 365 ASP 365 A PHE 366 n 366 PHE 366 A ASN 367 n 367 ASN 367 A PRO 368 n 368 PRO 368 A ASP 369 n 369 ASP 369 A LYS 370 n 370 LYS 370 A GLN 371 n 371 GLN 371 A LYS 372 n 372 LYS 372 A ALA 373 n 373 ALA 373 A TRP 374 n 374 TRP 374 A PHE 375 n 375 PHE 375 A LYS 376 n 376 LYS 376 A LEU 377 n 377 LEU 377 A VAL 378 n 378 VAL 378 A TYR 379 n 379 TYR 379 A ASP 380 n 380 ASP 380 A PRO 381 n 381 PRO 381 A GLU 382 n 382 GLU 382 A THR 383 n 383 THR 383 A THR 384 n 384 THR 384 A GLN 385 n 385 GLN 385 A ILE 386 n 386 ILE 386 A LEU 387 n 387 LEU 387 A GLY 388 n 388 GLY 388 A ALA 389 n 389 ALA 389 A GLN 390 n 390 GLN 390 A LEU 391 n 391 LEU 391 A MET 392 n 392 MET 392 A SER 393 n 393 SER 393 A LYS 394 n 394 LYS 394 A ALA 395 n 395 ALA 395 A ASP 396 n 396 ASP 396 A LEU 397 n 397 LEU 397 A THR 398 n 398 THR 398 A ALA 399 n 399 ALA 399 A ASN 400 n 400 ASN 400 A ILE 401 n 401 ILE 401 A ASN 402 n 402 ASN 402 A ALA 403 n 403 ALA 403 A ILE 404 n 404 ILE 404 A SER 405 n 405 SER 405 A LEU 406 n 406 LEU 406 A ALA 407 n 407 ALA 407 A ILE 408 n 408 ILE 408 A GLN 409 n 409 GLN 409 A ALA 410 n 410 ALA 410 A LYS 411 n 411 LYS 411 A MET 412 n 412 MET 412 A THR 413 n 413 THR 413 A ILE 414 n 414 ILE 414 A GLU 415 n 415 GLU 415 A ASP 416 n 416 ASP 416 A LEU 417 n 417 LEU 417 A ALA 418 n 418 ALA 418 A TYR 419 n 419 TYR 419 A ALA 420 n 420 ALA 420 A ASP 421 n 421 ASP 421 A PHE 422 n 422 PHE 422 A PHE 423 n 423 PHE 423 A PHE 424 n 424 PHE 424 A GLN 425 n 425 GLN 425 A PRO 426 n 426 PRO 426 A ALA 427 n 427 ALA 427 A PHE 428 n 428 PHE 428 A ASP 429 n 429 ASP 429 A LYS 430 n 430 LYS 430 A PRO 431 n 431 PRO 431 A TRP 432 n 432 TRP 432 A ASN 433 n 433 ASN 433 A ILE 434 n 434 ILE 434 A ILE 435 n 435 ILE 435 A ASN 436 n 436 ASN 436 A THR 437 n 437 THR 437 A ALA 438 n 438 ALA 438 A ALA 439 n 439 ALA 439 A LEU 440 n 440 LEU 440 A GLU 441 n 441 GLU 441 A ALA 442 n 442 ALA 442 A VAL 443 n 443 VAL 443 A LYS 444 n 444 LYS 444 A GLN 445 n 445 GLN 445 A GLU 446 n 446 GLU 446 A ARG 447 n 447 ARG 447 A author_defined_assembly 4 tetrameric software_defined_assembly PISA,PQS 2 dimeric 8960 -54 32580 A CSX 42 S-OXY CYSTEINE A CSX 42 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_666 -y+1,-x+1,-z+1 crystal symmetry operation 155.1800000000 155.1800000000 189.4100000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 10_665 -x+1,-y+1,z crystal symmetry operation 155.1800000000 155.1800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 15_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 189.4100000000 A N ASN 72 A N ASN 72 A O ILE 28 A O ILE 28 A O GLU 27 A O GLU 27 A N VAL 3 A N VAL 3 A N ILE 4 A N ILE 4 A O LYS 106 A O LYS 106 A N ILE 109 A N ILE 109 A O PHE 277 A O PHE 277 A N GLN 83 A N GLN 83 A O GLN 88 A O GLN 88 A N VAL 91 A N VAL 91 A O ARG 100 A O ARG 100 A N VAL 114 A N VAL 114 A O ARG 245 A O ARG 245 A N TYR 129 A N TYR 129 A O VAL 238 A O VAL 238 A N LEU 237 A N LEU 237 A O ASN 151 A O ASN 151 A N VAL 152 A N VAL 152 A O LYS 174 A O LYS 174 A N VAL 177 A N VAL 177 A O THR 207 A O THR 207 A N GLU 218 A N GLU 218 A O LYS 225 A O LYS 225 A O VAL 226 A O VAL 226 A N TYR 233 A N TYR 233 A N TYR 287 A N TYR 287 A O THR 292 A O THR 292 A N VAL 331 A N VAL 331 A O TYR 334 A O TYR 334 A O THR 339 A O THR 339 A N ALA 389 A N ALA 389 A O MET 392 A O MET 392 A N TRP 374 A N TRP 374 A N TYR 379 A N TYR 379 A O LYS 354 A O LYS 354 1 6.27 0.80 106.30 112.57 A A A CD1 CG CD2 TRP TRP TRP 30 30 30 N 1 -5.57 0.80 107.30 101.73 A A A CE2 CD2 CG TRP TRP TRP 30 30 30 N 1 3.91 0.50 120.30 124.21 A A A NE CZ NH1 ARG ARG ARG 132 132 132 N 1 -3.44 0.50 120.30 116.86 A A A NE CZ NH2 ARG ARG ARG 132 132 132 N 1 3.14 0.50 120.30 123.44 A A A NE CZ NH1 ARG ARG ARG 134 134 134 N 1 6.31 0.80 106.30 112.61 A A A CD1 CG CD2 TRP TRP TRP 136 136 136 N 1 -6.07 0.80 107.30 101.23 A A A CE2 CD2 CG TRP TRP TRP 136 136 136 N 1 4.17 0.50 120.30 124.47 A A A NE CZ NH1 ARG ARG ARG 183 183 183 N 1 -3.40 0.50 120.30 116.90 A A A NE CZ NH2 ARG ARG ARG 183 183 183 N 1 6.06 0.80 106.30 112.36 A A A CD1 CG CD2 TRP TRP TRP 250 250 250 N 1 -5.84 0.80 107.30 101.46 A A A CE2 CD2 CG TRP TRP TRP 250 250 250 N 1 6.07 0.80 106.30 112.37 A A A CD1 CG CD2 TRP TRP TRP 374 374 374 N 1 -5.96 0.80 107.30 101.34 A A A CE2 CD2 CG TRP TRP TRP 374 374 374 N 1 7.17 0.80 106.30 113.47 A A A CD1 CG CD2 TRP TRP TRP 432 432 432 N 1 -6.35 0.80 107.30 100.95 A A A CE2 CD2 CG TRP TRP TRP 432 432 432 N 1 3.13 0.50 120.30 123.43 A A A NE CZ NH1 ARG ARG ARG 447 447 447 N 1 A A NE2 CD2 HIS HIS 10 10 -0.069 0.011 1.373 1.304 N 1 A A NE2 CD2 HIS HIS 23 23 -0.071 0.011 1.373 1.302 N 1 A A NE2 CD2 HIS HIS 87 87 -0.070 0.011 1.373 1.303 N 1 A A NE2 CD2 HIS HIS 258 258 -0.066 0.011 1.373 1.307 N 1 A A O N3 PHE FAD 424 448 2.11 1_555 15_556 1 A A NE2 O GLN HOH 425 506 2.16 1_555 15_556 1 A A O O HOH HOH 523 550 2.17 1_555 15_556 1 A HIS 23 -143.08 55.93 1 A ASN 127 77.88 35.04 1 A THR 292 -128.64 -160.97 1 A PRO 316 -66.98 79.64 1 A PHE 332 53.22 -124.60 1 A ASN 433 -65.42 -179.90 0.2340000 0.1960000 0.2810000 0.2430000 2.45 50.0 1821 36614 36614 5 86 Random 1 X-PLOR FreeR 2 2 Engh & Huber 0.26 2.45 50.0 131 3672 53 0 3488 0.016 3.0 1.07 10.2 2.45 99. 1F8W 42662 36615 2 2 0.0550000 1 9.5 5.4 85.8 0.3630000 2.45 2.6 0.3900000 1 3.5 71.1 model building X-PLOR refinement X-PLOR 3.1 data reduction DENZO data scaling SCALEPACK phasing X-PLOR CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M 1 N N 2 N N 3 N N FUNCTIONAL MOLECULE IS A HOMOTETRAMER A SER 9 A SER 9 HELX_P A HIS 23 A HIS 23 1 1 15 A LEU 40 A LEU 40 HELX_P A CSX 42 A CSX 42 5 2 3 A GLY 43 A GLY 43 HELX_P A GLU 49 A GLU 49 1 3 7 A ASP 54 A ASP 54 HELX_P A VAL 58 A VAL 58 5 4 5 A THR 62 A THR 62 HELX_P A SER 68 A SER 68 1 5 7 A ARG 132 A ARG 132 HELX_P A VAL 145 A VAL 145 1 6 14 A GLY 158 A GLY 158 HELX_P A ALA 171 A ALA 171 1 7 14 A ASP 190 A ASP 190 HELX_P A ALA 203 A ALA 203 1 8 14 A THR 248 A THR 248 HELX_P A LEU 251 A LEU 251 5 9 4 A ASN 288 A ASN 288 HELX_P A ASP 291 A ASP 291 5 10 4 A LEU 298 A LEU 298 HELX_P A ASN 312 A ASN 312 1 11 15 A ASN 342 A ASN 342 HELX_P A GLY 350 A GLY 350 1 12 9 A ALA 399 A ALA 399 HELX_P A ALA 410 A ALA 410 1 13 12 A THR 413 A THR 413 HELX_P A TYR 419 A TYR 419 1 14 7 A ASN 433 A ASN 433 HELX_P A GLU 446 A GLU 446 1 15 14 covale 1.346 both A SER 41 A C SER 41 1_555 A CSX 42 A N CSX 42 1_555 covale 1.343 both A CSX 42 A C CSX 42 1_555 A GLY 43 A N GLY 43 1_555 OXIDOREDUCTASE Interface, FAD, NAD-binding domains, OXIDOREDUCTASE NAPE_ENTFA UNP 1 1 P37062 1 447 1F8W 1 447 P37062 A 1 1 447 1 ARG engineered mutation MET 303 1F8W A P37062 UNP 303 303 5 3 2 5 3 2 5 parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 71 A VAL 71 A PHE 74 A PHE 74 A GLU 27 A GLU 27 A TYR 31 A TYR 31 A LYS 2 A LYS 2 A LEU 6 A LEU 6 A LYS 106 A LYS 106 A ILE 109 A ILE 109 A VAL 276 A VAL 276 A ALA 278 A ALA 278 A THR 77 A THR 77 A GLN 83 A GLN 83 A GLN 88 A GLN 88 A ASP 93 A ASP 93 A GLU 99 A GLU 99 A ASN 103 A ASN 103 A ALA 113 A ALA 113 A PRO 115 A PRO 115 A VAL 244 A VAL 244 A PRO 246 A PRO 246 A ILE 128 A ILE 128 A TYR 129 A TYR 129 A LEU 237 A LEU 237 A VAL 240 A VAL 240 A ASN 151 A ASN 151 A ILE 155 A ILE 155 A LYS 174 A LYS 174 A ILE 178 A ILE 178 A ILE 206 A ILE 206 A ALA 209 A ALA 209 A VAL 214 A VAL 214 A GLU 218 A GLU 218 A LYS 225 A LYS 225 A THR 228 A THR 228 A ALA 232 A ALA 232 A ASP 234 A ASP 234 A ILE 285 A ILE 285 A TYR 287 A TYR 287 A THR 292 A THR 292 A VAL 294 A VAL 294 A SER 327 A SER 327 A VAL 331 A VAL 331 A TYR 334 A TYR 334 A GLY 340 A GLY 340 A ILE 386 A ILE 386 A SER 393 A SER 393 A LYS 372 A LYS 372 A TYR 379 A TYR 379 A LYS 354 A LYS 354 A ASP 361 A ASP 361 BINDING SITE FOR RESIDUE FAD A 448 A FAD 448 Software 32 A LEU 6 A LEU 6 32 1_555 A GLY 7 A GLY 7 32 1_555 A SER 9 A SER 9 32 1_555 A HIS 10 A HIS 10 32 1_555 A GLY 11 A GLY 11 32 1_555 A GLU 32 A GLU 32 32 1_555 A LYS 33 A LYS 33 32 1_555 A SER 41 A SER 41 32 1_555 A CSX 42 A CSX 42 32 1_555 A THR 77 A THR 77 32 1_555 A GLU 78 A GLU 78 32 1_555 A ILE 79 A ILE 79 32 1_555 A SER 110 A SER 110 32 1_555 A PRO 111 A PRO 111 32 1_555 A GLY 112 A GLY 112 32 1_555 A ALA 113 A ALA 113 32 1_555 A MET 131 A MET 131 32 1_555 A ARG 132 A ARG 132 32 1_555 A TYR 159 A TYR 159 32 1_555 A ASN 247 A ASN 247 32 1_555 A GLY 280 A GLY 280 32 1_555 A ASP 281 A ASP 281 32 1_555 A ALA 297 A ALA 297 32 1_555 A LEU 298 A LEU 298 32 1_555 A ALA 299 A ALA 299 32 1_555 A THR 300 A THR 300 32 1_555 A PHE 424 A PHE 424 32 15_556 A GLN 425 A GLN 425 32 15_556 A HOH 451 C HOH 32 1_555 A HOH 492 C HOH 32 1_555 A HOH 506 C HOH 32 1_555 A HOH 567 C HOH 32 1_555 98 I 41 2 2