0.006623
0.000000
0.000000
0.000000
0.006623
0.000000
0.000000
0.000000
0.006623
0.00000
0.00000
0.00000
Armstrong, S.R.
Cook, W.J.
Short, S.A.
Ealick, S.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
151.000
151.000
151.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
UK
Structure
STRUE6
2005
0969-2126
4
97
107
10.1016/S0969-2126(96)00013-5
8805514
Crystal structures of nucleoside 2-deoxyribosyltransferase in native and ligand-bound forms reveal architecture of the active site.
1996
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
265
2682
2683
Crystallization and Preliminary X-ray Investigation of Recombinant Lactobacillus leichmannii Nucleoside Deoxyribosyltransferase
1990
10.2210/pdb1f8x/pdb
pdb_00001f8x
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
296
1
296
1
296
1
AREA DETECTOR
1989-01-01
SIEMENS-NICOLET X100
AREA DETECTOR
1989-01-01
SIEMENS-NICOLET X100
AREA DETECTOR
1993-01-01
SDMS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
1.5418
ROTATING ANODE
RIGAKU
1.5418
ROTATING ANODE
RIGAKU
18098.354
NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE
2.4.2.6
2
nat
polymer
18.015
water
80
nat
water
no
no
MPKKTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND
IMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIKMSQLKDFNFNKPRFDFYEGAVY
MPKKTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND
IMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIKMSQLKDFNFNKPRFDFYEGAVY
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lactobacillus
sample
28039
Lactobacillus leichmannii
3
3.96
68.95
VAPOR DIFFUSION, HANGING DROP
5.4
ammonium sulfate, citrate buffer, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2000-07-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2000-07-05
REL
HOH
water
HOH
802
2
HOH
HOH
802
A
HOH
803
2
HOH
HOH
803
A
HOH
804
2
HOH
HOH
804
A
HOH
805
2
HOH
HOH
805
A
HOH
806
2
HOH
HOH
806
A
HOH
807
2
HOH
HOH
807
A
HOH
809
2
HOH
HOH
809
A
HOH
810
2
HOH
HOH
810
A
HOH
811
2
HOH
HOH
811
A
HOH
812
2
HOH
HOH
812
A
HOH
814
2
HOH
HOH
814
A
HOH
816
2
HOH
HOH
816
A
HOH
817
2
HOH
HOH
817
A
HOH
818
2
HOH
HOH
818
A
HOH
819
2
HOH
HOH
819
A
HOH
820
2
HOH
HOH
820
A
HOH
821
2
HOH
HOH
821
A
HOH
822
2
HOH
HOH
822
A
HOH
823
2
HOH
HOH
823
A
HOH
824
2
HOH
HOH
824
A
HOH
829
2
HOH
HOH
829
A
HOH
830
2
HOH
HOH
830
A
HOH
831
2
HOH
HOH
831
A
HOH
833
2
HOH
HOH
833
A
HOH
834
2
HOH
HOH
834
A
HOH
835
2
HOH
HOH
835
A
HOH
836
2
HOH
HOH
836
A
HOH
839
2
HOH
HOH
839
A
HOH
840
2
HOH
HOH
840
A
HOH
848
2
HOH
HOH
848
A
HOH
850
2
HOH
HOH
850
A
HOH
852
2
HOH
HOH
852
A
HOH
855
2
HOH
HOH
855
A
HOH
856
2
HOH
HOH
856
A
HOH
857
2
HOH
HOH
857
A
HOH
859
2
HOH
HOH
859
A
HOH
860
2
HOH
HOH
860
A
HOH
861
2
HOH
HOH
861
A
HOH
862
2
HOH
HOH
862
A
HOH
863
2
HOH
HOH
863
A
HOH
864
2
HOH
HOH
864
A
HOH
866
2
HOH
HOH
866
A
HOH
867
2
HOH
HOH
867
A
HOH
871
2
HOH
HOH
871
A
HOH
872
2
HOH
HOH
872
A
HOH
873
2
HOH
HOH
873
A
HOH
876
2
HOH
HOH
876
A
HOH
877
2
HOH
HOH
877
A
HOH
879
2
HOH
HOH
879
A
HOH
801
2
HOH
HOH
801
B
HOH
808
2
HOH
HOH
808
B
HOH
813
2
HOH
HOH
813
B
HOH
815
2
HOH
HOH
815
B
HOH
825
2
HOH
HOH
825
B
HOH
826
2
HOH
HOH
826
B
HOH
827
2
HOH
HOH
827
B
HOH
828
2
HOH
HOH
828
B
HOH
832
2
HOH
HOH
832
B
HOH
837
2
HOH
HOH
837
B
HOH
838
2
HOH
HOH
838
B
HOH
841
2
HOH
HOH
841
B
HOH
842
2
HOH
HOH
842
B
HOH
843
2
HOH
HOH
843
B
HOH
844
2
HOH
HOH
844
B
HOH
845
2
HOH
HOH
845
B
HOH
846
2
HOH
HOH
846
B
HOH
847
2
HOH
HOH
847
B
HOH
849
2
HOH
HOH
849
B
HOH
851
2
HOH
HOH
851
B
HOH
853
2
HOH
HOH
853
B
HOH
854
2
HOH
HOH
854
B
HOH
858
2
HOH
HOH
858
B
HOH
865
2
HOH
HOH
865
B
HOH
868
2
HOH
HOH
868
B
HOH
869
2
HOH
HOH
869
B
HOH
870
2
HOH
HOH
870
B
HOH
874
2
HOH
HOH
874
B
HOH
875
2
HOH
HOH
875
B
HOH
878
2
HOH
HOH
878
B
HOH
880
2
HOH
HOH
880
B
n
1
1
A
PRO
2
n
2
PRO
2
A
LYS
3
n
3
LYS
3
A
LYS
4
n
4
LYS
4
A
THR
5
n
5
THR
5
A
ILE
6
n
6
ILE
6
A
TYR
7
n
7
TYR
7
A
PHE
8
n
8
PHE
8
A
GLY
9
n
9
GLY
9
A
ALA
10
n
10
ALA
10
A
GLY
11
n
11
GLY
11
A
TRP
12
n
12
TRP
12
A
PHE
13
n
13
PHE
13
A
THR
14
n
14
THR
14
A
ASP
15
n
15
ASP
15
A
ARG
16
n
16
ARG
16
A
GLN
17
n
17
GLN
17
A
ASN
18
n
18
ASN
18
A
LYS
19
n
19
LYS
19
A
ALA
20
n
20
ALA
20
A
TYR
21
n
21
TYR
21
A
LYS
22
n
22
LYS
22
A
GLU
23
n
23
GLU
23
A
ALA
24
n
24
ALA
24
A
MET
25
n
25
MET
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
GLU
30
n
30
GLU
30
A
ASN
31
n
31
ASN
31
A
PRO
32
n
32
PRO
32
A
THR
33
n
33
THR
33
A
ILE
34
n
34
ILE
34
A
ASP
35
n
35
ASP
35
A
LEU
36
n
36
LEU
36
A
GLU
37
n
37
GLU
37
A
ASN
38
n
38
ASN
38
A
SER
39
n
39
SER
39
A
TYR
40
n
40
TYR
40
A
VAL
41
n
41
VAL
41
A
PRO
42
n
42
PRO
42
A
LEU
43
n
43
LEU
43
A
ASP
44
n
44
ASP
44
A
ASN
45
n
45
ASN
45
A
GLN
46
n
46
GLN
46
A
TYR
47
n
47
TYR
47
A
LYS
48
n
48
LYS
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
ARG
51
n
51
ARG
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
GLU
54
n
54
GLU
54
A
HIS
55
n
55
HIS
55
A
PRO
56
n
56
PRO
56
A
GLU
57
n
57
GLU
57
A
TYR
58
n
58
TYR
58
A
LEU
59
n
59
LEU
59
A
HIS
60
n
60
HIS
60
A
ASP
61
n
61
ASP
61
A
LYS
62
n
62
LYS
62
A
VAL
63
n
63
VAL
63
A
TRP
64
n
64
TRP
64
A
ALA
65
n
65
ALA
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
THR
68
n
68
THR
68
A
TYR
69
n
69
TYR
69
A
ASN
70
n
70
ASN
70
A
ASN
71
n
71
ASN
71
A
ASP
72
n
72
ASP
72
A
LEU
73
n
73
LEU
73
A
ASN
74
n
74
ASN
74
A
GLY
75
n
75
GLY
75
A
ILE
76
n
76
ILE
76
A
LYS
77
n
77
LYS
77
A
THR
78
n
78
THR
78
A
ASN
79
n
79
ASN
79
A
ASP
80
n
80
ASP
80
A
ILE
81
n
81
ILE
81
A
MET
82
n
82
MET
82
A
LEU
83
n
83
LEU
83
A
GLY
84
n
84
GLY
84
A
VAL
85
n
85
VAL
85
A
TYR
86
n
86
TYR
86
A
ILE
87
n
87
ILE
87
A
PRO
88
n
88
PRO
88
A
ASP
89
n
89
ASP
89
A
GLU
90
n
90
GLU
90
A
GLU
91
n
91
GLU
91
A
ASP
92
n
92
ASP
92
A
VAL
93
n
93
VAL
93
A
GLY
94
n
94
GLY
94
A
LEU
95
n
95
LEU
95
A
GLY
96
n
96
GLY
96
A
MET
97
n
97
MET
97
A
GLU
98
n
98
GLU
98
A
LEU
99
n
99
LEU
99
A
GLY
100
n
100
GLY
100
A
TYR
101
n
101
TYR
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
SER
104
n
104
SER
104
A
GLN
105
n
105
GLN
105
A
GLY
106
n
106
GLY
106
A
LYS
107
n
107
LYS
107
A
TYR
108
n
108
TYR
108
A
VAL
109
n
109
VAL
109
A
LEU
110
n
110
LEU
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
ILE
113
n
113
ILE
113
A
PRO
114
n
114
PRO
114
A
ASP
115
n
115
ASP
115
A
GLU
116
n
116
GLU
116
A
ASP
117
n
117
ASP
117
A
TYR
118
n
118
TYR
118
A
GLY
119
n
119
GLY
119
A
LYS
120
n
120
LYS
120
A
PRO
121
n
121
PRO
121
A
ILE
122
n
122
ILE
122
A
ASN
123
n
123
ASN
123
A
LEU
124
n
124
LEU
124
A
MET
125
n
125
MET
125
A
SER
126
n
126
SER
126
A
TRP
127
n
127
TRP
127
A
GLY
128
n
128
GLY
128
A
VAL
129
n
129
VAL
129
A
SER
130
n
130
SER
130
A
ASP
131
n
131
ASP
131
A
ASN
132
n
132
ASN
132
A
VAL
133
n
133
VAL
133
A
ILE
134
n
134
ILE
134
A
LYS
135
n
135
LYS
135
A
MET
136
n
136
MET
136
A
SER
137
n
137
SER
137
A
GLN
138
n
138
GLN
138
A
LEU
139
n
139
LEU
139
A
LYS
140
n
140
LYS
140
A
ASP
141
n
141
ASP
141
A
PHE
142
n
142
PHE
142
A
ASN
143
n
143
ASN
143
A
PHE
144
n
144
PHE
144
A
ASN
145
n
145
ASN
145
A
LYS
146
n
146
LYS
146
A
PRO
147
n
147
PRO
147
A
ARG
148
n
148
ARG
148
A
PHE
149
n
149
PHE
149
A
ASP
150
n
150
ASP
150
A
PHE
151
n
151
PHE
151
A
TYR
152
n
152
TYR
152
A
GLU
153
n
153
GLU
153
A
GLY
154
n
154
GLY
154
A
ALA
155
n
155
ALA
155
A
VAL
156
n
156
VAL
156
A
TYR
157
n
157
TYR
157
A
n
1
201
B
PRO
202
n
2
PRO
202
B
LYS
203
n
3
LYS
203
B
LYS
204
n
4
LYS
204
B
THR
205
n
5
THR
205
B
ILE
206
n
6
ILE
206
B
TYR
207
n
7
TYR
207
B
PHE
208
n
8
PHE
208
B
GLY
209
n
9
GLY
209
B
ALA
210
n
10
ALA
210
B
GLY
211
n
11
GLY
211
B
TRP
212
n
12
TRP
212
B
PHE
213
n
13
PHE
213
B
THR
214
n
14
THR
214
B
ASP
215
n
15
ASP
215
B
ARG
216
n
16
ARG
216
B
GLN
217
n
17
GLN
217
B
ASN
218
n
18
ASN
218
B
LYS
219
n
19
LYS
219
B
ALA
220
n
20
ALA
220
B
TYR
221
n
21
TYR
221
B
LYS
222
n
22
LYS
222
B
GLU
223
n
23
GLU
223
B
ALA
224
n
24
ALA
224
B
MET
225
n
25
MET
225
B
GLU
226
n
26
GLU
226
B
ALA
227
n
27
ALA
227
B
LEU
228
n
28
LEU
228
B
LYS
229
n
29
LYS
229
B
GLU
230
n
30
GLU
230
B
ASN
231
n
31
ASN
231
B
PRO
232
n
32
PRO
232
B
THR
233
n
33
THR
233
B
ILE
234
n
34
ILE
234
B
ASP
235
n
35
ASP
235
B
LEU
236
n
36
LEU
236
B
GLU
237
n
37
GLU
237
B
ASN
238
n
38
ASN
238
B
SER
239
n
39
SER
239
B
TYR
240
n
40
TYR
240
B
VAL
241
n
41
VAL
241
B
PRO
242
n
42
PRO
242
B
LEU
243
n
43
LEU
243
B
ASP
244
n
44
ASP
244
B
ASN
245
n
45
ASN
245
B
GLN
246
n
46
GLN
246
B
TYR
247
n
47
TYR
247
B
LYS
248
n
48
LYS
248
B
GLY
249
n
49
GLY
249
B
ILE
250
n
50
ILE
250
B
ARG
251
n
51
ARG
251
B
VAL
252
n
52
VAL
252
B
ASP
253
n
53
ASP
253
B
GLU
254
n
54
GLU
254
B
HIS
255
n
55
HIS
255
B
PRO
256
n
56
PRO
256
B
GLU
257
n
57
GLU
257
B
TYR
258
n
58
TYR
258
B
LEU
259
n
59
LEU
259
B
HIS
260
n
60
HIS
260
B
ASP
261
n
61
ASP
261
B
LYS
262
n
62
LYS
262
B
VAL
263
n
63
VAL
263
B
TRP
264
n
64
TRP
264
B
ALA
265
n
65
ALA
265
B
THR
266
n
66
THR
266
B
ALA
267
n
67
ALA
267
B
THR
268
n
68
THR
268
B
TYR
269
n
69
TYR
269
B
ASN
270
n
70
ASN
270
B
ASN
271
n
71
ASN
271
B
ASP
272
n
72
ASP
272
B
LEU
273
n
73
LEU
273
B
ASN
274
n
74
ASN
274
B
GLY
275
n
75
GLY
275
B
ILE
276
n
76
ILE
276
B
LYS
277
n
77
LYS
277
B
THR
278
n
78
THR
278
B
ASN
279
n
79
ASN
279
B
ASP
280
n
80
ASP
280
B
ILE
281
n
81
ILE
281
B
MET
282
n
82
MET
282
B
LEU
283
n
83
LEU
283
B
GLY
284
n
84
GLY
284
B
VAL
285
n
85
VAL
285
B
TYR
286
n
86
TYR
286
B
ILE
287
n
87
ILE
287
B
PRO
288
n
88
PRO
288
B
ASP
289
n
89
ASP
289
B
GLU
290
n
90
GLU
290
B
GLU
291
n
91
GLU
291
B
ASP
292
n
92
ASP
292
B
VAL
293
n
93
VAL
293
B
GLY
294
n
94
GLY
294
B
LEU
295
n
95
LEU
295
B
GLY
296
n
96
GLY
296
B
MET
297
n
97
MET
297
B
GLU
298
n
98
GLU
298
B
LEU
299
n
99
LEU
299
B
GLY
300
n
100
GLY
300
B
TYR
301
n
101
TYR
301
B
ALA
302
n
102
ALA
302
B
LEU
303
n
103
LEU
303
B
SER
304
n
104
SER
304
B
GLN
305
n
105
GLN
305
B
GLY
306
n
106
GLY
306
B
LYS
307
n
107
LYS
307
B
TYR
308
n
108
TYR
308
B
VAL
309
n
109
VAL
309
B
LEU
310
n
110
LEU
310
B
LEU
311
n
111
LEU
311
B
VAL
312
n
112
VAL
312
B
ILE
313
n
113
ILE
313
B
PRO
314
n
114
PRO
314
B
ASP
315
n
115
ASP
315
B
GLU
316
n
116
GLU
316
B
ASP
317
n
117
ASP
317
B
TYR
318
n
118
TYR
318
B
GLY
319
n
119
GLY
319
B
LYS
320
n
120
LYS
320
B
PRO
321
n
121
PRO
321
B
ILE
322
n
122
ILE
322
B
ASN
323
n
123
ASN
323
B
LEU
324
n
124
LEU
324
B
MET
325
n
125
MET
325
B
SER
326
n
126
SER
326
B
TRP
327
n
127
TRP
327
B
GLY
328
n
128
GLY
328
B
VAL
329
n
129
VAL
329
B
SER
330
n
130
SER
330
B
ASP
331
n
131
ASP
331
B
ASN
332
n
132
ASN
332
B
VAL
333
n
133
VAL
333
B
ILE
334
n
134
ILE
334
B
LYS
335
n
135
LYS
335
B
MET
336
n
136
MET
336
B
SER
337
n
137
SER
337
B
GLN
338
n
138
GLN
338
B
LEU
339
n
139
LEU
339
B
LYS
340
n
140
LYS
340
B
ASP
341
n
141
ASP
341
B
PHE
342
n
142
PHE
342
B
ASN
343
n
143
ASN
343
B
PHE
344
n
144
PHE
344
B
ASN
345
n
145
ASN
345
B
LYS
346
n
146
LYS
346
B
PRO
347
n
147
PRO
347
B
ARG
348
n
148
ARG
348
B
PHE
349
n
149
PHE
349
B
ASP
350
n
150
ASP
350
B
PHE
351
n
151
PHE
351
B
TYR
352
n
152
TYR
352
B
GLU
353
n
153
GLU
353
B
GLY
354
n
154
GLY
354
B
ALA
355
n
155
ALA
355
B
VAL
356
n
156
VAL
356
B
TYR
357
n
157
TYR
357
B
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
6_555
z+1/2,-x+1/2,-y
crystal symmetry operation
75.5000000000
75.5000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
12_554
-y+1/2,-z,x-1/2
crystal symmetry operation
75.5000000000
0.0000000000
-75.5000000000
A
N
TYR
7
A
N
TYR
7
A
O
ILE
81
A
O
ILE
81
A
N
MET
82
A
N
MET
82
A
O
TYR
108
A
O
TYR
108
A
N
LEU
111
A
N
LEU
111
A
O
ASN
132
A
O
ASN
132
B
N
TYR
207
B
N
TYR
7
B
O
ILE
281
B
O
ILE
81
B
N
MET
282
B
N
MET
82
B
O
TYR
308
B
O
TYR
108
B
N
LEU
311
B
N
LEU
111
B
O
ASN
332
B
O
ASN
132
1
A
MET
1
A
MET
1
1
Y
1
B
MET
201
B
MET
1
1
Y
1
13.58
1.50
119.30
132.88
B
B
B
C
N
CA
HIS
PRO
PRO
255
256
256
Y
1
-14.96
2.10
128.40
113.44
B
B
B
C
N
CD
HIS
PRO
PRO
255
256
256
Y
1
-19.11
2.20
113.40
94.29
B
B
B
CA
CB
CG
GLU
GLU
GLU
316
316
316
N
1
A
ASN
45
-140.14
22.76
1
A
LYS
48
59.24
7.80
1
A
GLU
90
-159.37
57.72
1
B
TRP
212
-152.44
19.12
1
B
TYR
247
-40.72
108.39
1
B
LYS
248
39.41
47.07
1
B
ASP
253
-59.97
-2.16
1
B
HIS
255
-153.87
65.77
1
B
PRO
256
-54.00
15.11
1
B
ASP
315
-39.17
-35.10
1
B
ASP
350
-170.48
138.05
0.240
0.166
2.5
5.0
1584
15845
0
random
1
2.0
0
Engh & Huber
2.5
5.0
80
2616
0
0
2536
0.007
1.54
2.5
100.0
1F8X
223078
19875
0
0
0.115
1
11.2
95
phasing
PHASES
refinement
X-PLOR
data reduction
SDMS
data scaling
SDMS
CRYSTAL STRUCTURE OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE
1
N
N
1
N
N
2
N
N
2
N
N
A
THR
14
A
THR
14
HELX_P
A
ASN
31
A
ASN
31
1
1
18
A
ASP
35
A
ASP
35
HELX_P
A
SER
39
A
SER
39
5
2
5
A
VAL
41
A
VAL
41
HELX_P
A
ASN
45
A
ASN
45
5
3
5
A
GLN
46
A
GLN
46
HELX_P
A
ILE
50
A
ILE
50
5
4
5
A
HIS
55
A
HIS
55
HELX_P
A
LEU
59
A
LEU
59
5
5
5
A
ASP
61
A
ASP
61
HELX_P
A
ASN
79
A
ASN
79
1
6
19
A
ASP
92
A
ASP
92
HELX_P
A
GLN
105
A
GLN
105
1
7
14
A
PRO
114
A
PRO
114
HELX_P
A
TYR
118
A
TYR
118
5
8
5
A
ASN
123
A
ASN
123
HELX_P
A
SER
130
A
SER
130
1
9
8
A
SER
137
A
SER
137
HELX_P
A
LEU
139
A
LEU
139
5
10
3
B
THR
214
B
THR
14
HELX_P
B
ASN
231
B
ASN
31
1
11
18
B
VAL
241
B
VAL
41
HELX_P
B
GLN
246
B
GLN
46
5
12
6
B
GLN
246
B
GLN
46
HELX_P
B
ILE
250
B
ILE
50
5
13
5
B
ARG
251
B
ARG
51
HELX_P
B
HIS
255
B
HIS
55
5
14
5
B
HIS
255
B
HIS
55
HELX_P
B
HIS
260
B
HIS
60
5
15
6
B
ASP
261
B
ASP
61
HELX_P
B
THR
278
B
THR
78
1
16
18
B
ILE
287
B
ILE
87
HELX_P
B
GLU
291
B
GLU
91
5
17
5
B
ASP
292
B
ASP
92
HELX_P
B
GLN
305
B
GLN
105
1
18
14
B
ASN
323
B
ASN
123
HELX_P
B
SER
330
B
SER
130
1
19
8
B
SER
337
B
SER
137
HELX_P
B
PHE
342
B
PHE
142
5
20
6
TRANSFERASE
active site, alpha/beta protein, biocatalyst, nucleoside, TRANSFERASE
NTD_LACLE
UNP
1
1
Q9R5V5
1
156
1F8X
2
157
Q9R5V5
A
1
2
157
1
156
1F8X
202
357
Q9R5V5
B
1
2
157
4
4
parallel
parallel
parallel
parallel
parallel
parallel
A
ILE
6
A
ILE
6
A
ALA
10
A
ALA
10
A
ILE
81
A
ILE
81
A
VAL
85
A
VAL
85
A
TYR
108
A
TYR
108
A
ILE
113
A
ILE
113
A
ASN
132
A
ASN
132
A
LYS
135
A
LYS
135
B
ILE
206
B
ILE
6
B
GLY
209
B
GLY
9
B
ILE
281
B
ILE
81
B
VAL
285
B
VAL
85
B
TYR
308
B
TYR
108
B
ILE
313
B
ILE
113
B
ASN
332
B
ASN
132
B
LYS
335
B
LYS
135
199
I 21 3