1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Fan, J.-S. Zhang, Q. Tochio, H. Li, M. Zhang, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 306 97 108 10.1006/jmbi.2000.4374 11178896 Structural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 10381.899 DYNEIN 8KDA LIGHT CHAIN 2 man polymer 1001.114 BCL2-LIKE 11 (APOPTOSIS FACILITATOR) DLC8 BINDING REGION 2 syn polymer PROTEIN INHIBITOR OF NEURONAL NITRIC OXIDE SYNTHASE, DLC8 no no MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ VAILLFKSG MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ VAILLFKSG A,B polypeptide(L) no no MSCDKSTQT MSCDKSTQT C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus Escherichia sample 10116 Rattus norvegicus 562 Escherichia coli PLASMID PET14B repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance 1 0 2001-02-28 1 1 2008-04-27 1 2 2011-07-13 This is a solution structure of dynein light chain 8 (DLC8) complexed with one target, Bim. RCSB Y RCSB 2000-07-07 REL REL This peptide was chemically synthesized. This sequence occurs naturally in humans (Homo sapiens) sample structures with the lowest energy 200 1 3D_15N-separated_NOESY 3D_13C-separated_NOESY 2D NOESY 100mM 7.0 ambient 303 K torsion angle dynamics 1 lowest energy 1.5mM DLC8/Bim peptide complex 15N; 100mM phosphate buffer; 10mM DTT; 90% H2O and 10% D2O 90% H2O and 10% D2O 1.5mM DLC8/Bim peptide complex 15N,13C; 100mM phosphate buffer; 10mM DTT; 90% H2O and 10% D2O 90% H2O and 10% D2O 1.5mM DLC8/Bim peptide complex ; 100mM phosphate buffer; 10mM DTT; 99.9% D2O 99.9% D2O varian collection VNMR 6.1b processing NMRPipe 1.7 structure solution X-PLOR 3.8 refinement CNS 1.0 500 Varian INOVA 750 Varian INOVA MET 1 n 1 MET 1 A CYS 2 n 2 CYS 2 A ASP 3 n 3 ASP 3 A ARG 4 n 4 ARG 4 A LYS 5 n 5 LYS 5 A ALA 6 n 6 ALA 6 A VAL 7 n 7 VAL 7 A ILE 8 n 8 ILE 8 A LYS 9 n 9 LYS 9 A ASN 10 n 10 ASN 10 A ALA 11 n 11 ALA 11 A ASP 12 n 12 ASP 12 A MET 13 n 13 MET 13 A SER 14 n 14 SER 14 A GLU 15 n 15 GLU 15 A GLU 16 n 16 GLU 16 A MET 17 n 17 MET 17 A GLN 18 n 18 GLN 18 A GLN 19 n 19 GLN 19 A ASP 20 n 20 ASP 20 A SER 21 n 21 SER 21 A VAL 22 n 22 VAL 22 A GLU 23 n 23 GLU 23 A CYS 24 n 24 CYS 24 A ALA 25 n 25 ALA 25 A THR 26 n 26 THR 26 A GLN 27 n 27 GLN 27 A ALA 28 n 28 ALA 28 A LEU 29 n 29 LEU 29 A GLU 30 n 30 GLU 30 A LYS 31 n 31 LYS 31 A TYR 32 n 32 TYR 32 A ASN 33 n 33 ASN 33 A ILE 34 n 34 ILE 34 A GLU 35 n 35 GLU 35 A LYS 36 n 36 LYS 36 A ASP 37 n 37 ASP 37 A ILE 38 n 38 ILE 38 A ALA 39 n 39 ALA 39 A ALA 40 n 40 ALA 40 A HIS 41 n 41 HIS 41 A ILE 42 n 42 ILE 42 A LYS 43 n 43 LYS 43 A LYS 44 n 44 LYS 44 A GLU 45 n 45 GLU 45 A PHE 46 n 46 PHE 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A LYS 49 n 49 LYS 49 A TYR 50 n 50 TYR 50 A ASN 51 n 51 ASN 51 A PRO 52 n 52 PRO 52 A THR 53 n 53 THR 53 A TRP 54 n 54 TRP 54 A HIS 55 n 55 HIS 55 A CYS 56 n 56 CYS 56 A ILE 57 n 57 ILE 57 A VAL 58 n 58 VAL 58 A GLY 59 n 59 GLY 59 A ARG 60 n 60 ARG 60 A ASN 61 n 61 ASN 61 A PHE 62 n 62 PHE 62 A GLY 63 n 63 GLY 63 A SER 64 n 64 SER 64 A TYR 65 n 65 TYR 65 A VAL 66 n 66 VAL 66 A THR 67 n 67 THR 67 A HIS 68 n 68 HIS 68 A GLU 69 n 69 GLU 69 A THR 70 n 70 THR 70 A LYS 71 n 71 LYS 71 A HIS 72 n 72 HIS 72 A PHE 73 n 73 PHE 73 A ILE 74 n 74 ILE 74 A TYR 75 n 75 TYR 75 A PHE 76 n 76 PHE 76 A TYR 77 n 77 TYR 77 A LEU 78 n 78 LEU 78 A GLY 79 n 79 GLY 79 A GLN 80 n 80 GLN 80 A VAL 81 n 81 VAL 81 A ALA 82 n 82 ALA 82 A ILE 83 n 83 ILE 83 A LEU 84 n 84 LEU 84 A LEU 85 n 85 LEU 85 A PHE 86 n 86 PHE 86 A LYS 87 n 87 LYS 87 A SER 88 n 88 SER 88 A GLY 89 n 89 GLY 89 A MET 1 n 1 MET 1 B CYS 2 n 2 CYS 2 B ASP 3 n 3 ASP 3 B ARG 4 n 4 ARG 4 B LYS 5 n 5 LYS 5 B ALA 6 n 6 ALA 6 B VAL 7 n 7 VAL 7 B ILE 8 n 8 ILE 8 B LYS 9 n 9 LYS 9 B ASN 10 n 10 ASN 10 B ALA 11 n 11 ALA 11 B ASP 12 n 12 ASP 12 B MET 13 n 13 MET 13 B SER 14 n 14 SER 14 B GLU 15 n 15 GLU 15 B GLU 16 n 16 GLU 16 B MET 17 n 17 MET 17 B GLN 18 n 18 GLN 18 B GLN 19 n 19 GLN 19 B ASP 20 n 20 ASP 20 B SER 21 n 21 SER 21 B VAL 22 n 22 VAL 22 B GLU 23 n 23 GLU 23 B CYS 24 n 24 CYS 24 B ALA 25 n 25 ALA 25 B THR 26 n 26 THR 26 B GLN 27 n 27 GLN 27 B ALA 28 n 28 ALA 28 B LEU 29 n 29 LEU 29 B GLU 30 n 30 GLU 30 B LYS 31 n 31 LYS 31 B TYR 32 n 32 TYR 32 B ASN 33 n 33 ASN 33 B ILE 34 n 34 ILE 34 B GLU 35 n 35 GLU 35 B LYS 36 n 36 LYS 36 B ASP 37 n 37 ASP 37 B ILE 38 n 38 ILE 38 B ALA 39 n 39 ALA 39 B ALA 40 n 40 ALA 40 B HIS 41 n 41 HIS 41 B ILE 42 n 42 ILE 42 B LYS 43 n 43 LYS 43 B LYS 44 n 44 LYS 44 B GLU 45 n 45 GLU 45 B PHE 46 n 46 PHE 46 B ASP 47 n 47 ASP 47 B LYS 48 n 48 LYS 48 B LYS 49 n 49 LYS 49 B TYR 50 n 50 TYR 50 B ASN 51 n 51 ASN 51 B PRO 52 n 52 PRO 52 B THR 53 n 53 THR 53 B TRP 54 n 54 TRP 54 B HIS 55 n 55 HIS 55 B CYS 56 n 56 CYS 56 B ILE 57 n 57 ILE 57 B VAL 58 n 58 VAL 58 B GLY 59 n 59 GLY 59 B ARG 60 n 60 ARG 60 B ASN 61 n 61 ASN 61 B PHE 62 n 62 PHE 62 B GLY 63 n 63 GLY 63 B SER 64 n 64 SER 64 B TYR 65 n 65 TYR 65 B VAL 66 n 66 VAL 66 B THR 67 n 67 THR 67 B HIS 68 n 68 HIS 68 B GLU 69 n 69 GLU 69 B THR 70 n 70 THR 70 B LYS 71 n 71 LYS 71 B HIS 72 n 72 HIS 72 B PHE 73 n 73 PHE 73 B ILE 74 n 74 ILE 74 B TYR 75 n 75 TYR 75 B PHE 76 n 76 PHE 76 B TYR 77 n 77 TYR 77 B LEU 78 n 78 LEU 78 B GLY 79 n 79 GLY 79 B GLN 80 n 80 GLN 80 B VAL 81 n 81 VAL 81 B ALA 82 n 82 ALA 82 B ILE 83 n 83 ILE 83 B LEU 84 n 84 LEU 84 B LEU 85 n 85 LEU 85 B PHE 86 n 86 PHE 86 B LYS 87 n 87 LYS 87 B SER 88 n 88 SER 88 B GLY 89 n 89 GLY 89 B MET 1 n 1 MET 1 C SER 2 n 2 SER 2 C CYS 3 n 3 CYS 3 C ASP 4 n 4 ASP 4 C LYS 5 n 5 LYS 5 C SER 6 n 6 SER 6 C THR 7 n 7 THR 7 C GLN 8 n 8 GLN 8 C THR 9 n 9 THR 9 C MET 1 n 1 MET 1 D SER 2 n 2 SER 2 D CYS 3 n 3 CYS 3 D ASP 4 n 4 ASP 4 D LYS 5 n 5 LYS 5 D SER 6 n 6 SER 6 D THR 7 n 7 THR 7 D GLN 8 n 8 GLN 8 D THR 9 n 9 THR 9 D author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 12 A N ASP 12 A O PHE 73 A O PHE 73 A N LEU 78 A N LEU 78 A O VAL 81 A O VAL 81 A O PHE 86 A O PHE 86 A N HIS 55 A N HIS 55 A O VAL 66 A O VAL 66 C N LYS 5 C N LYS 5 A O TYR 65 A O TYR 65 B N CYS 56 B N CYS 56 B O GLY 59 B O GLY 59 B N ALA 82 B N ALA 82 B N LYS 87 B N LYS 87 B O HIS 72 B O HIS 72 B N TYR 77 B N TYR 77 B O VAL 7 B O VAL 7 A O VAL 66 A O VAL 66 C N LYS 5 C N LYS 5 B N HIS 68 B N HIS 68 D O CYS 3 D O CYS 3 1 A A O HD1 THR HIS 70 72 1.58 1 A ASP 3 43.23 -138.71 1 A ASP 12 -150.07 70.07 1 A ASN 33 -94.37 32.22 1 A ASN 51 84.33 141.02 1 A ASN 61 -171.16 134.47 1 A PHE 62 179.20 -170.98 1 A GLU 69 -85.28 -122.79 1 A GLN 80 82.68 -26.80 1 A PHE 86 -177.11 140.38 1 A SER 88 -154.62 43.45 1 B CYS 2 -177.92 46.01 1 B ARG 4 -177.02 130.12 1 B VAL 7 -156.82 66.53 1 B ASN 10 -174.84 144.42 1 B ASN 51 78.46 139.94 1 B PHE 62 178.35 144.79 1 B HIS 68 -128.93 -169.85 1 B GLU 69 -81.95 -125.65 1 B GLN 80 -90.37 42.73 1 B PHE 86 -178.50 141.95 1 B SER 88 -153.31 44.78 1 C CYS 3 174.73 145.60 1 D SER 2 -169.09 112.56 1 D CYS 3 -170.59 127.50 DYNEIN SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 8 (DLC8) AND BIM PEPTIDE COMPLEX 1 N N 1 N N 2 N N 2 N N A SER 14 A SER 14 HELX_P A TYR 32 A TYR 32 1 1 19 A ILE 34 A ILE 34 HELX_P A TYR 50 A TYR 50 1 2 17 B SER 14 B SER 14 HELX_P B TYR 32 B TYR 32 1 3 19 B ILE 34 B ILE 34 HELX_P B TYR 50 B TYR 50 1 4 17 CONTRACTILE PROTEIN/peptide dynein, light chain, DLC8, Bim, APOPTOSIS, CONTRACTILE PROTEIN-peptide complex A PRO 52 A PRO 52 1 A THR 53 A THR 53 0.80 B PRO 52 B PRO 52 1 B THR 53 B THR 53 0.54 DYL1_RAT UNP 1 1 P63170 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ VAILLFKSG B2L11_HUMAN UNP 2 108 O43521 MSCDKSTQT 1 89 1F95 1 89 P63170 A 1 1 89 1 89 1F95 1 89 P63170 B 1 1 89 108 116 1F95 1 9 O43521 C 2 1 9 108 116 1F95 1 9 O43521 D 2 1 9 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 6 A ALA 6 A MET 13 A MET 13 A HIS 72 A HIS 72 A LEU 78 A LEU 78 A VAL 81 A VAL 81 A LYS 87 A LYS 87 A TRP 54 A TRP 54 A VAL 66 A VAL 66 C LYS 5 C LYS 5 C GLN 8 C GLN 8 A TRP 54 A TRP 54 A VAL 66 A VAL 66 B TRP 54 B TRP 54 B HIS 68 B HIS 68 B VAL 81 B VAL 81 B LYS 87 B LYS 87 B HIS 72 B HIS 72 B LEU 78 B LEU 78 B ALA 6 B ALA 6 B MET 13 B MET 13 A TRP 54 A TRP 54 A VAL 66 A VAL 66 C LYS 5 C LYS 5 C GLN 8 C GLN 8 B TRP 54 B TRP 54 B HIS 68 B HIS 68 D CYS 3 D CYS 3 D GLN 8 D GLN 8 BINDING SITE FOR CHAIN C OF BCL2-LIKE 11 (APOPTOSIS FACILITATOR) Software 16 BINDING SITE FOR CHAIN D OF BCL2-LIKE 11 (APOPTOSIS FACILITATOR) Software 18 A ASN 61 A ASN 61 16 1_555 A PHE 62 A PHE 62 16 1_555 A GLY 63 A GLY 63 16 1_555 A SER 64 A SER 64 16 1_555 A TYR 65 A TYR 65 16 1_555 A VAL 66 A VAL 66 16 1_555 A THR 67 A THR 67 16 1_555 A HIS 68 A HIS 68 16 1_555 A GLU 69 A GLU 69 16 1_555 A THR 70 A THR 70 16 1_555 A PHE 73 A PHE 73 16 1_555 A TYR 75 A TYR 75 16 1_555 A TYR 77 A TYR 77 16 1_555 A ALA 82 A ALA 82 16 1_555 A LEU 84 A LEU 84 16 1_555 B LYS 36 B LYS 36 16 1_555 A ILE 34 A ILE 34 18 1_555 A GLU 35 A GLU 35 18 1_555 A LYS 36 A LYS 36 18 1_555 B ASN 10 B ASN 10 18 1_555 B GLY 59 B GLY 59 18 1_555 B ASN 61 B ASN 61 18 1_555 B PHE 62 B PHE 62 18 1_555 B GLY 63 B GLY 63 18 1_555 B SER 64 B SER 64 18 1_555 B TYR 65 B TYR 65 18 1_555 B VAL 66 B VAL 66 18 1_555 B THR 67 B THR 67 18 1_555 B HIS 68 B HIS 68 18 1_555 B GLU 69 B GLU 69 18 1_555 B THR 70 B THR 70 18 1_555 B TYR 75 B TYR 75 18 1_555 B ALA 82 B ALA 82 18 1_555 B LEU 84 B LEU 84 18 1_555 1 P 1