1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Fan, J.-S.
Zhang, Q.
Tochio, H.
Li, M.
Zhang, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
306
97
108
10.1006/jmbi.2000.4374
11178896
Structural basis of diverse sequence-dependent target recognition by the 8 kDa dynein light chain.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
10381.899
DYNEIN
8KDA LIGHT CHAIN
2
man
polymer
1001.114
BCL2-LIKE 11 (APOPTOSIS FACILITATOR)
DLC8 BINDING REGION
2
syn
polymer
PROTEIN INHIBITOR OF NEURONAL NITRIC OXIDE SYNTHASE, DLC8
no
no
MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
VAILLFKSG
MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
VAILLFKSG
A,B
polypeptide(L)
no
no
MSCDKSTQT
MSCDKSTQT
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
10116
Rattus norvegicus
562
Escherichia coli
PLASMID
PET14B
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
1
0
2001-02-28
1
1
2008-04-27
1
2
2011-07-13
This is a solution structure of dynein light chain 8 (DLC8) complexed with one target, Bim.
RCSB
Y
RCSB
2000-07-07
REL
REL
This peptide was chemically synthesized. This sequence occurs naturally in humans (Homo sapiens)
sample
structures with the lowest energy
200
1
3D_15N-separated_NOESY
3D_13C-separated_NOESY
2D NOESY
100mM
7.0
ambient
303
K
torsion angle dynamics
1
lowest energy
1.5mM DLC8/Bim peptide complex 15N; 100mM phosphate buffer; 10mM DTT; 90% H2O and 10% D2O
90% H2O and 10% D2O
1.5mM DLC8/Bim peptide complex 15N,13C; 100mM phosphate buffer; 10mM DTT; 90% H2O and 10% D2O
90% H2O and 10% D2O
1.5mM DLC8/Bim peptide complex ; 100mM phosphate buffer; 10mM DTT; 99.9% D2O
99.9% D2O
varian
collection
VNMR
6.1b
processing
NMRPipe
1.7
structure solution
X-PLOR
3.8
refinement
CNS
1.0
500
Varian
INOVA
750
Varian
INOVA
MET
1
n
1
MET
1
A
CYS
2
n
2
CYS
2
A
ASP
3
n
3
ASP
3
A
ARG
4
n
4
ARG
4
A
LYS
5
n
5
LYS
5
A
ALA
6
n
6
ALA
6
A
VAL
7
n
7
VAL
7
A
ILE
8
n
8
ILE
8
A
LYS
9
n
9
LYS
9
A
ASN
10
n
10
ASN
10
A
ALA
11
n
11
ALA
11
A
ASP
12
n
12
ASP
12
A
MET
13
n
13
MET
13
A
SER
14
n
14
SER
14
A
GLU
15
n
15
GLU
15
A
GLU
16
n
16
GLU
16
A
MET
17
n
17
MET
17
A
GLN
18
n
18
GLN
18
A
GLN
19
n
19
GLN
19
A
ASP
20
n
20
ASP
20
A
SER
21
n
21
SER
21
A
VAL
22
n
22
VAL
22
A
GLU
23
n
23
GLU
23
A
CYS
24
n
24
CYS
24
A
ALA
25
n
25
ALA
25
A
THR
26
n
26
THR
26
A
GLN
27
n
27
GLN
27
A
ALA
28
n
28
ALA
28
A
LEU
29
n
29
LEU
29
A
GLU
30
n
30
GLU
30
A
LYS
31
n
31
LYS
31
A
TYR
32
n
32
TYR
32
A
ASN
33
n
33
ASN
33
A
ILE
34
n
34
ILE
34
A
GLU
35
n
35
GLU
35
A
LYS
36
n
36
LYS
36
A
ASP
37
n
37
ASP
37
A
ILE
38
n
38
ILE
38
A
ALA
39
n
39
ALA
39
A
ALA
40
n
40
ALA
40
A
HIS
41
n
41
HIS
41
A
ILE
42
n
42
ILE
42
A
LYS
43
n
43
LYS
43
A
LYS
44
n
44
LYS
44
A
GLU
45
n
45
GLU
45
A
PHE
46
n
46
PHE
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
LYS
49
n
49
LYS
49
A
TYR
50
n
50
TYR
50
A
ASN
51
n
51
ASN
51
A
PRO
52
n
52
PRO
52
A
THR
53
n
53
THR
53
A
TRP
54
n
54
TRP
54
A
HIS
55
n
55
HIS
55
A
CYS
56
n
56
CYS
56
A
ILE
57
n
57
ILE
57
A
VAL
58
n
58
VAL
58
A
GLY
59
n
59
GLY
59
A
ARG
60
n
60
ARG
60
A
ASN
61
n
61
ASN
61
A
PHE
62
n
62
PHE
62
A
GLY
63
n
63
GLY
63
A
SER
64
n
64
SER
64
A
TYR
65
n
65
TYR
65
A
VAL
66
n
66
VAL
66
A
THR
67
n
67
THR
67
A
HIS
68
n
68
HIS
68
A
GLU
69
n
69
GLU
69
A
THR
70
n
70
THR
70
A
LYS
71
n
71
LYS
71
A
HIS
72
n
72
HIS
72
A
PHE
73
n
73
PHE
73
A
ILE
74
n
74
ILE
74
A
TYR
75
n
75
TYR
75
A
PHE
76
n
76
PHE
76
A
TYR
77
n
77
TYR
77
A
LEU
78
n
78
LEU
78
A
GLY
79
n
79
GLY
79
A
GLN
80
n
80
GLN
80
A
VAL
81
n
81
VAL
81
A
ALA
82
n
82
ALA
82
A
ILE
83
n
83
ILE
83
A
LEU
84
n
84
LEU
84
A
LEU
85
n
85
LEU
85
A
PHE
86
n
86
PHE
86
A
LYS
87
n
87
LYS
87
A
SER
88
n
88
SER
88
A
GLY
89
n
89
GLY
89
A
MET
1
n
1
MET
1
B
CYS
2
n
2
CYS
2
B
ASP
3
n
3
ASP
3
B
ARG
4
n
4
ARG
4
B
LYS
5
n
5
LYS
5
B
ALA
6
n
6
ALA
6
B
VAL
7
n
7
VAL
7
B
ILE
8
n
8
ILE
8
B
LYS
9
n
9
LYS
9
B
ASN
10
n
10
ASN
10
B
ALA
11
n
11
ALA
11
B
ASP
12
n
12
ASP
12
B
MET
13
n
13
MET
13
B
SER
14
n
14
SER
14
B
GLU
15
n
15
GLU
15
B
GLU
16
n
16
GLU
16
B
MET
17
n
17
MET
17
B
GLN
18
n
18
GLN
18
B
GLN
19
n
19
GLN
19
B
ASP
20
n
20
ASP
20
B
SER
21
n
21
SER
21
B
VAL
22
n
22
VAL
22
B
GLU
23
n
23
GLU
23
B
CYS
24
n
24
CYS
24
B
ALA
25
n
25
ALA
25
B
THR
26
n
26
THR
26
B
GLN
27
n
27
GLN
27
B
ALA
28
n
28
ALA
28
B
LEU
29
n
29
LEU
29
B
GLU
30
n
30
GLU
30
B
LYS
31
n
31
LYS
31
B
TYR
32
n
32
TYR
32
B
ASN
33
n
33
ASN
33
B
ILE
34
n
34
ILE
34
B
GLU
35
n
35
GLU
35
B
LYS
36
n
36
LYS
36
B
ASP
37
n
37
ASP
37
B
ILE
38
n
38
ILE
38
B
ALA
39
n
39
ALA
39
B
ALA
40
n
40
ALA
40
B
HIS
41
n
41
HIS
41
B
ILE
42
n
42
ILE
42
B
LYS
43
n
43
LYS
43
B
LYS
44
n
44
LYS
44
B
GLU
45
n
45
GLU
45
B
PHE
46
n
46
PHE
46
B
ASP
47
n
47
ASP
47
B
LYS
48
n
48
LYS
48
B
LYS
49
n
49
LYS
49
B
TYR
50
n
50
TYR
50
B
ASN
51
n
51
ASN
51
B
PRO
52
n
52
PRO
52
B
THR
53
n
53
THR
53
B
TRP
54
n
54
TRP
54
B
HIS
55
n
55
HIS
55
B
CYS
56
n
56
CYS
56
B
ILE
57
n
57
ILE
57
B
VAL
58
n
58
VAL
58
B
GLY
59
n
59
GLY
59
B
ARG
60
n
60
ARG
60
B
ASN
61
n
61
ASN
61
B
PHE
62
n
62
PHE
62
B
GLY
63
n
63
GLY
63
B
SER
64
n
64
SER
64
B
TYR
65
n
65
TYR
65
B
VAL
66
n
66
VAL
66
B
THR
67
n
67
THR
67
B
HIS
68
n
68
HIS
68
B
GLU
69
n
69
GLU
69
B
THR
70
n
70
THR
70
B
LYS
71
n
71
LYS
71
B
HIS
72
n
72
HIS
72
B
PHE
73
n
73
PHE
73
B
ILE
74
n
74
ILE
74
B
TYR
75
n
75
TYR
75
B
PHE
76
n
76
PHE
76
B
TYR
77
n
77
TYR
77
B
LEU
78
n
78
LEU
78
B
GLY
79
n
79
GLY
79
B
GLN
80
n
80
GLN
80
B
VAL
81
n
81
VAL
81
B
ALA
82
n
82
ALA
82
B
ILE
83
n
83
ILE
83
B
LEU
84
n
84
LEU
84
B
LEU
85
n
85
LEU
85
B
PHE
86
n
86
PHE
86
B
LYS
87
n
87
LYS
87
B
SER
88
n
88
SER
88
B
GLY
89
n
89
GLY
89
B
MET
1
n
1
MET
1
C
SER
2
n
2
SER
2
C
CYS
3
n
3
CYS
3
C
ASP
4
n
4
ASP
4
C
LYS
5
n
5
LYS
5
C
SER
6
n
6
SER
6
C
THR
7
n
7
THR
7
C
GLN
8
n
8
GLN
8
C
THR
9
n
9
THR
9
C
MET
1
n
1
MET
1
D
SER
2
n
2
SER
2
D
CYS
3
n
3
CYS
3
D
ASP
4
n
4
ASP
4
D
LYS
5
n
5
LYS
5
D
SER
6
n
6
SER
6
D
THR
7
n
7
THR
7
D
GLN
8
n
8
GLN
8
D
THR
9
n
9
THR
9
D
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
12
A
N
ASP
12
A
O
PHE
73
A
O
PHE
73
A
N
LEU
78
A
N
LEU
78
A
O
VAL
81
A
O
VAL
81
A
O
PHE
86
A
O
PHE
86
A
N
HIS
55
A
N
HIS
55
A
O
VAL
66
A
O
VAL
66
C
N
LYS
5
C
N
LYS
5
A
O
TYR
65
A
O
TYR
65
B
N
CYS
56
B
N
CYS
56
B
O
GLY
59
B
O
GLY
59
B
N
ALA
82
B
N
ALA
82
B
N
LYS
87
B
N
LYS
87
B
O
HIS
72
B
O
HIS
72
B
N
TYR
77
B
N
TYR
77
B
O
VAL
7
B
O
VAL
7
A
O
VAL
66
A
O
VAL
66
C
N
LYS
5
C
N
LYS
5
B
N
HIS
68
B
N
HIS
68
D
O
CYS
3
D
O
CYS
3
1
A
A
O
HD1
THR
HIS
70
72
1.58
1
A
ASP
3
43.23
-138.71
1
A
ASP
12
-150.07
70.07
1
A
ASN
33
-94.37
32.22
1
A
ASN
51
84.33
141.02
1
A
ASN
61
-171.16
134.47
1
A
PHE
62
179.20
-170.98
1
A
GLU
69
-85.28
-122.79
1
A
GLN
80
82.68
-26.80
1
A
PHE
86
-177.11
140.38
1
A
SER
88
-154.62
43.45
1
B
CYS
2
-177.92
46.01
1
B
ARG
4
-177.02
130.12
1
B
VAL
7
-156.82
66.53
1
B
ASN
10
-174.84
144.42
1
B
ASN
51
78.46
139.94
1
B
PHE
62
178.35
144.79
1
B
HIS
68
-128.93
-169.85
1
B
GLU
69
-81.95
-125.65
1
B
GLN
80
-90.37
42.73
1
B
PHE
86
-178.50
141.95
1
B
SER
88
-153.31
44.78
1
C
CYS
3
174.73
145.60
1
D
SER
2
-169.09
112.56
1
D
CYS
3
-170.59
127.50
DYNEIN
SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 8 (DLC8) AND BIM PEPTIDE COMPLEX
1
N
N
1
N
N
2
N
N
2
N
N
A
SER
14
A
SER
14
HELX_P
A
TYR
32
A
TYR
32
1
1
19
A
ILE
34
A
ILE
34
HELX_P
A
TYR
50
A
TYR
50
1
2
17
B
SER
14
B
SER
14
HELX_P
B
TYR
32
B
TYR
32
1
3
19
B
ILE
34
B
ILE
34
HELX_P
B
TYR
50
B
TYR
50
1
4
17
CONTRACTILE PROTEIN/peptide
dynein, light chain, DLC8, Bim, APOPTOSIS, CONTRACTILE PROTEIN-peptide complex
A
PRO
52
A
PRO
52
1
A
THR
53
A
THR
53
0.80
B
PRO
52
B
PRO
52
1
B
THR
53
B
THR
53
0.54
DYL1_RAT
UNP
1
1
P63170
MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
VAILLFKSG
B2L11_HUMAN
UNP
2
108
O43521
MSCDKSTQT
1
89
1F95
1
89
P63170
A
1
1
89
1
89
1F95
1
89
P63170
B
1
1
89
108
116
1F95
1
9
O43521
C
2
1
9
108
116
1F95
1
9
O43521
D
2
1
9
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
6
A
ALA
6
A
MET
13
A
MET
13
A
HIS
72
A
HIS
72
A
LEU
78
A
LEU
78
A
VAL
81
A
VAL
81
A
LYS
87
A
LYS
87
A
TRP
54
A
TRP
54
A
VAL
66
A
VAL
66
C
LYS
5
C
LYS
5
C
GLN
8
C
GLN
8
A
TRP
54
A
TRP
54
A
VAL
66
A
VAL
66
B
TRP
54
B
TRP
54
B
HIS
68
B
HIS
68
B
VAL
81
B
VAL
81
B
LYS
87
B
LYS
87
B
HIS
72
B
HIS
72
B
LEU
78
B
LEU
78
B
ALA
6
B
ALA
6
B
MET
13
B
MET
13
A
TRP
54
A
TRP
54
A
VAL
66
A
VAL
66
C
LYS
5
C
LYS
5
C
GLN
8
C
GLN
8
B
TRP
54
B
TRP
54
B
HIS
68
B
HIS
68
D
CYS
3
D
CYS
3
D
GLN
8
D
GLN
8
BINDING SITE FOR CHAIN C OF BCL2-LIKE 11 (APOPTOSIS FACILITATOR)
Software
16
BINDING SITE FOR CHAIN D OF BCL2-LIKE 11 (APOPTOSIS FACILITATOR)
Software
18
A
ASN
61
A
ASN
61
16
1_555
A
PHE
62
A
PHE
62
16
1_555
A
GLY
63
A
GLY
63
16
1_555
A
SER
64
A
SER
64
16
1_555
A
TYR
65
A
TYR
65
16
1_555
A
VAL
66
A
VAL
66
16
1_555
A
THR
67
A
THR
67
16
1_555
A
HIS
68
A
HIS
68
16
1_555
A
GLU
69
A
GLU
69
16
1_555
A
THR
70
A
THR
70
16
1_555
A
PHE
73
A
PHE
73
16
1_555
A
TYR
75
A
TYR
75
16
1_555
A
TYR
77
A
TYR
77
16
1_555
A
ALA
82
A
ALA
82
16
1_555
A
LEU
84
A
LEU
84
16
1_555
B
LYS
36
B
LYS
36
16
1_555
A
ILE
34
A
ILE
34
18
1_555
A
GLU
35
A
GLU
35
18
1_555
A
LYS
36
A
LYS
36
18
1_555
B
ASN
10
B
ASN
10
18
1_555
B
GLY
59
B
GLY
59
18
1_555
B
ASN
61
B
ASN
61
18
1_555
B
PHE
62
B
PHE
62
18
1_555
B
GLY
63
B
GLY
63
18
1_555
B
SER
64
B
SER
64
18
1_555
B
TYR
65
B
TYR
65
18
1_555
B
VAL
66
B
VAL
66
18
1_555
B
THR
67
B
THR
67
18
1_555
B
HIS
68
B
HIS
68
18
1_555
B
GLU
69
B
GLU
69
18
1_555
B
THR
70
B
THR
70
18
1_555
B
TYR
75
B
TYR
75
18
1_555
B
ALA
82
B
ALA
82
18
1_555
B
LEU
84
B
LEU
84
18
1_555
1
P 1