0.023507 0.000000 0.000000 0.000000 0.012008 0.000000 0.000000 0.000000 0.007655 0.00000 0.00000 0.00000 Kostrewa, D. Brockhaus, M. D'Arcy, A. Dale, G. Bazzoni, G. Dejana, E. Winkler, F. Hennig, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.540 83.280 130.640 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK EMBO J. EMJODG 0897 0261-4189 20 4391 4398 10.1093/emboj/20.16.4391 11500366 X-ray structure of junctional adhesion molecule: structural basis for homophilic adhesion via a novel dimerization motif. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 120 1 AREA DETECTOR 1998-08-06 SIEMENS HI-STAR SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ELLIOTT GX-21 22851.234 JUNCTION ADHESION MOLECULE 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 70 nat water no no KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY TCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY TCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus fall armyworm Spodoptera sample 10090 Mus musculus SF9 7108 Spodoptera frugiperda BACULOVIRUS 1 2.53 51.39 VAPOR DIFFUSION, HANGING DROP 8.5 25% Peg 3350, 200 mM MgCl2, 100 mM Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Version format compliance Version format compliance 1 0 2001-01-10 1 1 2008-04-27 1 2 2011-07-13 RCSB Y RCSB 2000-07-07 REL REL MG MAGNESIUM ION HOH water MG2 250 2 MG MG 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A LYS 27 n 1 LYS 27 A GLY 28 n 2 GLY 28 A SER 29 n 3 SER 29 A VAL 30 n 4 VAL 30 A TYR 31 n 5 TYR 31 A THR 32 n 6 THR 32 A ALA 33 n 7 ALA 33 A GLN 34 n 8 GLN 34 A SER 35 n 9 SER 35 A ASP 36 n 10 ASP 36 A VAL 37 n 11 VAL 37 A GLN 38 n 12 GLN 38 A VAL 39 n 13 VAL 39 A PRO 40 n 14 PRO 40 A GLU 41 n 15 GLU 41 A ASN 42 n 16 ASN 42 A GLU 43 n 17 GLU 43 A SER 44 n 18 SER 44 A ILE 45 n 19 ILE 45 A LYS 46 n 20 LYS 46 A LEU 47 n 21 LEU 47 A THR 48 n 22 THR 48 A CYS 49 n 23 CYS 49 A THR 50 n 24 THR 50 A TYR 51 n 25 TYR 51 A SER 52 n 26 SER 52 A GLY 53 n 27 GLY 53 A PHE 54 n 28 PHE 54 A SER 55 n 29 SER 55 A SER 56 n 30 SER 56 A PRO 57 n 31 PRO 57 A ARG 58 n 32 ARG 58 A VAL 59 n 33 VAL 59 A GLU 60 n 34 GLU 60 A TRP 61 n 35 TRP 61 A LYS 62 n 36 LYS 62 A PHE 63 n 37 PHE 63 A VAL 64 n 38 VAL 64 A GLN 65 n 39 GLN 65 A GLY 66 n 40 GLY 66 A SER 67 n 41 SER 67 A THR 68 n 42 THR 68 A THR 69 n 43 THR 69 A ALA 70 n 44 ALA 70 A LEU 71 n 45 LEU 71 A VAL 72 n 46 VAL 72 A CYS 73 n 47 CYS 73 A TYR 74 n 48 TYR 74 A ASN 75 n 49 ASN 75 A SER 76 n 50 SER 76 A GLN 77 n 51 GLN 77 A ILE 78 n 52 ILE 78 A THR 79 n 53 THR 79 A ALA 80 n 54 ALA 80 A PRO 81 n 55 PRO 81 A TYR 82 n 56 TYR 82 A ALA 83 n 57 ALA 83 A ASP 84 n 58 ASP 84 A ARG 85 n 59 ARG 85 A VAL 86 n 60 VAL 86 A THR 87 n 61 THR 87 A PHE 88 n 62 PHE 88 A SER 89 n 63 SER 89 A SER 90 n 64 SER 90 A SER 91 n 65 SER 91 A GLY 92 n 66 GLY 92 A ILE 93 n 67 ILE 93 A THR 94 n 68 THR 94 A PHE 95 n 69 PHE 95 A SER 96 n 70 SER 96 A SER 97 n 71 SER 97 A VAL 98 n 72 VAL 98 A THR 99 n 73 THR 99 A ARG 100 n 74 ARG 100 A LYS 101 n 75 LYS 101 A ASP 102 n 76 ASP 102 A ASN 103 n 77 ASN 103 A GLY 104 n 78 GLY 104 A GLU 105 n 79 GLU 105 A TYR 106 n 80 TYR 106 A THR 107 n 81 THR 107 A CYS 108 n 82 CYS 108 A MET 109 n 83 MET 109 A VAL 110 n 84 VAL 110 A SER 111 n 85 SER 111 A GLU 112 n 86 GLU 112 A GLU 113 n 87 GLU 113 A GLY 114 n 88 GLY 114 A GLY 115 n 89 GLY 115 A GLN 116 n 90 GLN 116 A ASN 117 n 91 ASN 117 A TYR 118 n 92 TYR 118 A GLY 119 n 93 GLY 119 A GLU 120 n 94 GLU 120 A VAL 121 n 95 VAL 121 A SER 122 n 96 SER 122 A ILE 123 n 97 ILE 123 A HIS 124 n 98 HIS 124 A LEU 125 n 99 LEU 125 A THR 126 n 100 THR 126 A VAL 127 n 101 VAL 127 A LEU 128 n 102 LEU 128 A VAL 129 n 103 VAL 129 A PRO 130 n 104 PRO 130 A PRO 131 n 105 PRO 131 A SER 132 n 106 SER 132 A LYS 133 n 107 LYS 133 A PRO 134 n 108 PRO 134 A THR 135 n 109 THR 135 A ILE 136 n 110 ILE 136 A SER 137 n 111 SER 137 A VAL 138 n 112 VAL 138 A PRO 139 n 113 PRO 139 A SER 140 n 114 SER 140 A SER 141 n 115 SER 141 A VAL 142 n 116 VAL 142 A THR 143 n 117 THR 143 A ILE 144 n 118 ILE 144 A GLY 145 n 119 GLY 145 A ASN 146 n 120 ASN 146 A ARG 147 n 121 ARG 147 A ALA 148 n 122 ALA 148 A VAL 149 n 123 VAL 149 A LEU 150 n 124 LEU 150 A THR 151 n 125 THR 151 A CYS 152 n 126 CYS 152 A SER 153 n 127 SER 153 A GLU 154 n 128 GLU 154 A HIS 155 n 129 HIS 155 A ASP 156 n 130 ASP 156 A GLY 157 n 131 GLY 157 A SER 158 n 132 SER 158 A PRO 159 n 133 PRO 159 A PRO 160 n 134 PRO 160 A SER 161 n 135 SER 161 A GLU 162 n 136 GLU 162 A TYR 163 n 137 TYR 163 A SER 164 n 138 SER 164 A TRP 165 n 139 TRP 165 A PHE 166 n 140 PHE 166 A LYS 167 n 141 LYS 167 A ASP 168 n 142 ASP 168 A GLY 169 n 143 GLY 169 A ILE 170 n 144 ILE 170 A SER 171 n 145 SER 171 A MET 172 n 146 MET 172 A LEU 173 n 147 LEU 173 A THR 174 n 148 THR 174 A n 149 175 A n 150 176 A n 151 177 A n 152 178 A n 153 179 A THR 180 n 154 THR 180 A ARG 181 n 155 ARG 181 A ALA 182 n 156 ALA 182 A PHE 183 n 157 PHE 183 A MET 184 n 158 MET 184 A ASN 185 n 159 ASN 185 A SER 186 n 160 SER 186 A SER 187 n 161 SER 187 A PHE 188 n 162 PHE 188 A THR 189 n 163 THR 189 A ILE 190 n 164 ILE 190 A ASP 191 n 165 ASP 191 A PRO 192 n 166 PRO 192 A LYS 193 n 167 LYS 193 A SER 194 n 168 SER 194 A GLY 195 n 169 GLY 195 A ASP 196 n 170 ASP 196 A LEU 197 n 171 LEU 197 A ILE 198 n 172 ILE 198 A PHE 199 n 173 PHE 199 A ASP 200 n 174 ASP 200 A PRO 201 n 175 PRO 201 A VAL 202 n 176 VAL 202 A THR 203 n 177 THR 203 A ALA 204 n 178 ALA 204 A PHE 205 n 179 PHE 205 A ASP 206 n 180 ASP 206 A SER 207 n 181 SER 207 A GLY 208 n 182 GLY 208 A GLU 209 n 183 GLU 209 A TYR 210 n 184 TYR 210 A TYR 211 n 185 TYR 211 A CYS 212 n 186 CYS 212 A GLN 213 n 187 GLN 213 A ALA 214 n 188 ALA 214 A GLN 215 n 189 GLN 215 A ASN 216 n 190 ASN 216 A GLY 217 n 191 GLY 217 A TYR 218 n 192 TYR 218 A GLY 219 n 193 GLY 219 A THR 220 n 194 THR 220 A ALA 221 n 195 ALA 221 A MET 222 n 196 MET 222 A ARG 223 n 197 ARG 223 A SER 224 n 198 SER 224 A GLU 225 n 199 GLU 225 A ALA 226 n 200 ALA 226 A ALA 227 n 201 ALA 227 A HIS 228 n 202 HIS 228 A MET 229 n 203 MET 229 A ASP 230 n 204 ASP 230 A ALA 231 n 205 ALA 231 A VAL 232 n 206 VAL 232 A GLU 233 n 207 GLU 233 A LEU 234 n 208 LEU 234 A ASN 235 n 209 ASN 235 A VAL 236 n 210 VAL 236 A GLY 237 n 211 GLY 237 A GLY 238 n 212 GLY 238 A author_defined_assembly 1 monomeric A HIS 155 A NE2 HIS 129 1_555 A MG 250 B MG MG 1_555 A HOH 255 C O HOH 1_555 78.7 A HIS 155 A NE2 HIS 129 1_555 A MG 250 B MG MG 1_555 A HOH 288 C O HOH 1_555 86.6 A HOH 255 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 288 C O HOH 1_555 164.5 A HIS 155 A NE2 HIS 129 1_555 A MG 250 B MG MG 1_555 A HOH 307 C O HOH 1_555 170.2 A HOH 255 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 307 C O HOH 1_555 99.3 A HOH 288 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 307 C O HOH 1_555 94.3 A HIS 155 A NE2 HIS 129 1_555 A MG 250 B MG MG 1_555 A HOH 311 C O HOH 1_555 84.5 A HOH 255 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 311 C O HOH 1_555 87.4 A HOH 288 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 311 C O HOH 1_555 86.2 A HOH 307 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 311 C O HOH 1_555 85.8 A HIS 155 A NE2 HIS 129 1_555 A MG 250 B MG MG 1_555 A HOH 281 C O HOH 1_555 88.7 A HOH 255 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 281 C O HOH 1_555 87.0 A HOH 288 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 281 C O HOH 1_555 97.7 A HOH 307 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 281 C O HOH 1_555 100.8 A HOH 311 C O HOH 1_555 A MG 250 B MG MG 1_555 A HOH 281 C O HOH 1_555 171.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 31 A N TYR 5 A O THR 50 A O THR 24 A N VAL 37 A N VAL 11 A O HIS 124 A O HIS 98 A N LEU 125 A N LEU 99 A O GLY 104 A O GLY 78 A O SER 111 A O SER 85 A N ARG 58 A N ARG 32 A N GLN 65 A N GLN 39 A O THR 68 A O THR 42 A N TYR 74 A N TYR 48 A O GLN 77 A O GLN 51 A N LEU 47 A N LEU 21 A O ILE 93 A O ILE 67 A N THR 94 A N THR 68 A O THR 87 A O THR 61 A N SER 137 A N SER 111 A O THR 151 A O THR 125 A N LEU 150 A N LEU 124 A O LEU 197 A O LEU 171 A N ILE 198 A N ILE 172 A O THR 189 A O THR 163 A N VAL 142 A N VAL 116 A O ASP 230 A O ASP 204 A N MET 229 A N MET 203 A O GLY 208 A O GLY 182 A O GLN 215 A O GLN 189 A N GLU 162 A N GLU 136 A O LYS 167 A O LYS 141 A N ILE 170 A N ILE 144 A N VAL 142 A N VAL 116 A O ASP 230 A O ASP 204 A N MET 229 A N MET 203 A O GLY 208 A O GLY 182 A N ALA 214 A N ALA 188 A O MET 222 A O MET 196 1 A ALA 175 A ALA 149 1 Y 1 A ASP 176 A ASP 150 1 Y 1 A ALA 177 A ALA 151 1 Y 1 A LYS 178 A LYS 152 1 Y 1 A LYS 179 A LYS 153 1 Y 1 A ARG 85 -141.05 -1.39 1 A ASN 185 -67.48 3.39 1 A SER 187 -99.88 59.97 0.21 0.15 0.15 0.15 2.5 25.0 750 7497 7497 89.5 10% of data 1 0 0 Engh & Huber 2.5 25.0 70 1637 1 0 1566 0.005 1.3 24.5 2.5 25 1F97 18966 18966 0 0 0.054 1 14.4 2.5 89.5 0.032 2.5 2.6 7497 1.8 68.3 data scaling XDS data reduction XDS phasing SHARP refinement X-PLOR 98.0 JUNCTION ADHESION MOLECULE SOLUBLE PART OF THE JUNCTION ADHESION MOLECULE FROM MOUSE 1 N N 2 N N 3 N N homodimer, under certain conditions a fraction of tetramer A ALA 80 A ALA 54 HELX_P A ALA 83 A ALA 57 5 1 4 A THR 99 A THR 73 HELX_P A ASN 103 A ASN 77 5 2 5 A THR 203 A THR 177 HELX_P A SER 207 A SER 181 5 3 5 disulf 2.039 A CYS 49 A SG CYS 23 1_555 A CYS 108 A SG CYS 82 1_555 disulf 2.029 A CYS 152 A SG CYS 126 1_555 A CYS 212 A SG CYS 186 1_555 metalc 2.385 A MG 250 B MG MG 1_555 A HIS 155 A NE2 HIS 129 1_555 metalc 1.996 A MG 250 B MG MG 1_555 A HOH 255 C O HOH 1_555 metalc 1.870 A MG 250 B MG MG 1_555 A HOH 288 C O HOH 1_555 metalc 2.129 A MG 250 B MG MG 1_555 A HOH 307 C O HOH 1_555 metalc 2.330 A MG 250 B MG MG 1_555 A HOH 311 C O HOH 1_555 metalc 2.176 A MG 250 B MG MG 1_555 A HOH 281 C O HOH 1_555 CELL ADHESION immunoglobulin superfamily, beta-sandwich fold, CELL ADHESION A SER 158 A SER 132 1 A PRO 159 A PRO 133 -0.18 A ASP 200 A ASP 174 1 A PRO 201 A PRO 175 0.05 JAM1_MOUSE UNP 1 O88792 27 238 1F97 27 238 O88792 A 1 1 212 2 6 3 4 5 4 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A SER 29 A SER 3 A TYR 31 A TYR 5 A THR 50 A THR 24 A SER 52 A SER 26 A ASP 36 A ASP 10 A PRO 40 A PRO 14 A TYR 118 A TYR 92 A LEU 128 A LEU 102 A GLY 104 A GLY 78 A GLU 112 A GLU 86 A PRO 57 A PRO 31 A GLN 65 A GLN 39 A THR 68 A THR 42 A TYR 74 A TYR 48 A GLN 77 A GLN 51 A ILE 78 A ILE 52 A ILE 45 A ILE 19 A THR 48 A THR 22 A GLY 92 A GLY 66 A PHE 95 A PHE 69 A VAL 86 A VAL 60 A SER 89 A SER 63 A THR 135 A THR 109 A SER 137 A SER 111 A ALA 148 A ALA 122 A SER 153 A SER 127 A LEU 197 A LEU 171 A PHE 199 A PHE 173 A PHE 188 A PHE 162 A ILE 190 A ILE 164 A SER 141 A SER 115 A THR 143 A THR 117 A ALA 227 A ALA 201 A VAL 232 A VAL 206 A GLY 208 A GLY 182 A GLN 215 A GLN 189 A GLU 162 A GLU 136 A LYS 167 A LYS 141 A ILE 170 A ILE 144 A SER 171 A SER 145 A SER 141 A SER 115 A THR 143 A THR 117 A ALA 227 A ALA 201 A VAL 232 A VAL 206 A GLY 208 A GLY 182 A GLN 215 A GLN 189 A MET 222 A MET 196 A ARG 223 A ARG 197 BINDING SITE FOR RESIDUE MG A 250 Software 6 A HIS 155 A HIS 129 6 1_555 A HOH 255 C HOH 6 1_555 A HOH 281 C HOH 6 1_555 A HOH 288 C HOH 6 1_555 A HOH 307 C HOH 6 1_555 A HOH 311 C HOH 6 1_555 23 I 2 2 2