0.032680
0.000000
0.012349
0.000000
0.015848
0.000000
0.000000
0.000000
0.033829
0.00000
0.00000
0.00000
Capitani, G.
Markovic-Housley, Z.
DelVal, G.
Morris, M.
Jansonius, J.N.
Schurmann, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
110.7
90.00
30.6
63.1
31.6
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
302
135
154
10.1006/jmbi.2000.4006
10964566
Crystal structures of two functionally different thioredoxins in spinach chloroplasts.
2000
10.2210/pdb1faa/pdb
pdb_00001faa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
DIFFRACTOMETER
1991
ENRAF-NONIUS FAST
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR571
13920.255
THIOREDOXIN F
LONG FORM
M1L, Q3L
1
man
polymer
18.015
water
34
nat
water
no
no
MYYLELALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQEN
KTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
MYYLELALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQEN
KTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
spinach
Spinacia
Escherichia
sample
CHLOROPLAST
3562
Spinacia oleracea
562
Escherichia coli
PKK233-2 (MODIFIED)
1
2.05
39.98
VAPOR DIFFUSION, HANGING DROP
7.0
sodium acetate,
2,5-hexane diol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
diffrn_detector
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2000-09-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2018-04-18
1
5
2021-11-03
_software.name
_diffrn_detector.detector
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
thioredoxin f from spinach chloroplast (short form)
thioredoxin m from spinach chloroplast (reduced form)
thioredoxin m from spinach chloroplast (oxidized form)
RCSB
Y
RCSB
2000-07-13
REL
REL
HOH
water
WAT
1
2
HOH
HOH
122
A
WAT
2
2
HOH
HOH
123
A
WAT
3
2
HOH
HOH
124
A
WAT
4
2
HOH
HOH
125
A
WAT
5
2
HOH
HOH
126
A
WAT
6
2
HOH
HOH
127
A
WAT
7
2
HOH
HOH
128
A
WAT
8
2
HOH
HOH
129
A
WAT
9
2
HOH
HOH
130
A
WAT
10
2
HOH
HOH
131
A
WAT
11
2
HOH
HOH
132
A
WAT
12
2
HOH
HOH
133
A
WAT
13
2
HOH
HOH
134
A
WAT
14
2
HOH
HOH
135
A
WAT
15
2
HOH
HOH
136
A
WAT
16
2
HOH
HOH
137
A
WAT
17
2
HOH
HOH
138
A
WAT
18
2
HOH
HOH
139
A
WAT
19
2
HOH
HOH
140
A
WAT
20
2
HOH
HOH
141
A
WAT
21
2
HOH
HOH
142
A
WAT
22
2
HOH
HOH
143
A
WAT
23
2
HOH
HOH
144
A
WAT
24
2
HOH
HOH
145
A
WAT
25
2
HOH
HOH
146
A
WAT
26
2
HOH
HOH
147
A
WAT
27
2
HOH
HOH
148
A
WAT
28
2
HOH
HOH
149
A
WAT
29
2
HOH
HOH
150
A
WAT
30
2
HOH
HOH
151
A
WAT
31
2
HOH
HOH
152
A
WAT
32
2
HOH
HOH
153
A
WAT
33
2
HOH
HOH
154
A
WAT
34
2
HOH
HOH
155
A
n
1
-2
A
n
2
-1
A
n
3
0
A
LEU
1
n
4
LEU
1
A
GLU
2
n
5
GLU
2
A
LEU
3
n
6
LEU
3
A
ALA
4
n
7
ALA
4
A
LEU
5
n
8
LEU
5
A
GLY
6
n
9
GLY
6
A
THR
7
n
10
THR
7
A
GLN
8
n
11
GLN
8
A
GLU
9
n
12
GLU
9
A
MET
10
n
13
MET
10
A
GLU
11
n
14
GLU
11
A
ALA
12
n
15
ALA
12
A
ILE
13
n
16
ILE
13
A
VAL
14
n
17
VAL
14
A
GLY
15
n
18
GLY
15
A
LYS
16
n
19
LYS
16
A
VAL
17
n
20
VAL
17
A
THR
18
n
21
THR
18
A
GLU
19
n
22
GLU
19
A
VAL
20
n
23
VAL
20
A
ASN
21
n
24
ASN
21
A
LYS
22
n
25
LYS
22
A
ASP
23
n
26
ASP
23
A
THR
24
n
27
THR
24
A
PHE
25
n
28
PHE
25
A
TRP
26
n
29
TRP
26
A
PRO
27
n
30
PRO
27
A
ILE
28
n
31
ILE
28
A
VAL
29
n
32
VAL
29
A
LYS
30
n
33
LYS
30
A
ALA
31
n
34
ALA
31
A
ALA
32
n
35
ALA
32
A
GLY
33
n
36
GLY
33
A
ASP
34
n
37
ASP
34
A
LYS
35
n
38
LYS
35
A
PRO
36
n
39
PRO
36
A
VAL
37
n
40
VAL
37
A
VAL
38
n
41
VAL
38
A
LEU
39
n
42
LEU
39
A
ASP
40
n
43
ASP
40
A
MET
41
n
44
MET
41
A
PHE
42
n
45
PHE
42
A
THR
43
n
46
THR
43
A
GLN
44
n
47
GLN
44
A
TRP
45
n
48
TRP
45
A
CYS
46
n
49
CYS
46
A
GLY
47
n
50
GLY
47
A
PRO
48
n
51
PRO
48
A
CYS
49
n
52
CYS
49
A
LYS
50
n
53
LYS
50
A
ALA
51
n
54
ALA
51
A
MET
52
n
55
MET
52
A
ALA
53
n
56
ALA
53
A
PRO
54
n
57
PRO
54
A
LYS
55
n
58
LYS
55
A
TYR
56
n
59
TYR
56
A
GLU
57
n
60
GLU
57
A
LYS
58
n
61
LYS
58
A
LEU
59
n
62
LEU
59
A
ALA
60
n
63
ALA
60
A
GLU
61
n
64
GLU
61
A
GLU
62
n
65
GLU
62
A
TYR
63
n
66
TYR
63
A
LEU
64
n
67
LEU
64
A
ASP
65
n
68
ASP
65
A
VAL
66
n
69
VAL
66
A
ILE
67
n
70
ILE
67
A
PHE
68
n
71
PHE
68
A
LEU
69
n
72
LEU
69
A
LYS
70
n
73
LYS
70
A
LEU
71
n
74
LEU
71
A
ASP
72
n
75
ASP
72
A
CYS
73
n
76
CYS
73
A
ASN
74
n
77
ASN
74
A
GLN
75
n
78
GLN
75
A
GLU
76
n
79
GLU
76
A
ASN
77
n
80
ASN
77
A
LYS
78
n
81
LYS
78
A
THR
79
n
82
THR
79
A
LEU
80
n
83
LEU
80
A
ALA
81
n
84
ALA
81
A
LYS
82
n
85
LYS
82
A
GLU
83
n
86
GLU
83
A
LEU
84
n
87
LEU
84
A
GLY
85
n
88
GLY
85
A
ILE
86
n
89
ILE
86
A
ARG
87
n
90
ARG
87
A
VAL
88
n
91
VAL
88
A
VAL
89
n
92
VAL
89
A
PRO
90
n
93
PRO
90
A
THR
91
n
94
THR
91
A
PHE
92
n
95
PHE
92
A
LYS
93
n
96
LYS
93
A
ILE
94
n
97
ILE
94
A
LEU
95
n
98
LEU
95
A
LYS
96
n
99
LYS
96
A
GLU
97
n
100
GLU
97
A
ASN
98
n
101
ASN
98
A
SER
99
n
102
SER
99
A
VAL
100
n
103
VAL
100
A
VAL
101
n
104
VAL
101
A
GLY
102
n
105
GLY
102
A
GLU
103
n
106
GLU
103
A
VAL
104
n
107
VAL
104
A
THR
105
n
108
THR
105
A
GLY
106
n
109
GLY
106
A
ALA
107
n
110
ALA
107
A
LYS
108
n
111
LYS
108
A
TYR
109
n
112
TYR
109
A
ASP
110
n
113
ASP
110
A
LYS
111
n
114
LYS
111
A
LEU
112
n
115
LEU
112
A
LEU
113
n
116
LEU
113
A
GLU
114
n
117
GLU
114
A
ALA
115
n
118
ALA
115
A
ILE
116
n
119
ILE
116
A
GLN
117
n
120
GLN
117
A
ALA
118
n
121
ALA
118
A
ALA
119
n
122
ALA
119
A
ARG
120
n
123
ARG
120
A
SER
121
n
124
SER
121
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
18
A
N
THR
21
A
O
PHE
68
A
O
PHE
71
A
O
ILE
67
A
O
ILE
70
A
N
VAL
38
A
N
VAL
41
A
N
MET
41
A
N
MET
44
A
O
THR
91
A
O
THR
94
A
N
LYS
96
A
N
LYS
99
A
O
SER
99
A
O
SER
102
1
A
MET
-2
A
MET
1
1
Y
1
A
TYR
-1
A
TYR
2
1
Y
1
A
TYR
0
A
TYR
3
1
Y
1
A
ASN
74
-111.51
-154.80
Used overall anisotropic B-factor
refinement and bulk solvent correction
(X-PLOR 3.851)
0.268
0.209
1.85
25.6
299
9180
95.2
RANDOM
1
0.0
Engh & Huber
1.85
25.6
34
977
0
0
943
0.01
1.3
26.7
0.73
25.6
1.85
25.6
1FAA
9180
0.035
1
95.2
data collection
MADNESS
data reduction
ROTAVATA
phasing
AMoRE
refinement
X-PLOR
3.851
data reduction
MADNESS
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
CRYSTAL STRUCTURE OF THIOREDOXIN F FROM SPINACH CHLOROPLAST (LONG FORM)
1
N
N
2
N
N
The biological assembly is a monomer
A
GLY
6
A
GLY
9
HELX_P
A
ALA
12
A
ALA
15
1
1
7
A
THR
24
A
THR
27
HELX_P
A
ALA
32
A
ALA
35
1
2
9
A
CYS
46
A
CYS
49
HELX_P
A
TYR
63
A
TYR
66
1
3
18
A
ASN
77
A
ASN
80
HELX_P
A
GLY
85
A
GLY
88
1
4
9
A
LYS
108
A
LYS
111
HELX_P
A
ARG
120
A
ARG
123
1
5
13
disulf
2.032
A
CYS
46
A
SG
CYS
49
1_555
A
CYS
49
A
SG
CYS
52
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT
A
VAL
89
A
VAL
92
1
A
PRO
90
A
PRO
93
-0.06
TRXF_SPIOL
UNP
1
69
P09856
MEQALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTL
AKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
69
189
1FAA
1
121
P09856
A
1
4
124
1
cloning artifact
MET
-2
1FAA
A
P09856
UNP
1
1
cloning artifact
TYR
-1
1FAA
A
P09856
UNP
2
1
cloning artifact
TYR
0
1FAA
A
P09856
UNP
3
1
MET
engineered mutation
LEU
1
1FAA
A
P09856
UNP
69
4
1
GLN
engineered mutation
LEU
3
1FAA
A
P09856
UNP
71
6
5
parallel
parallel
anti-parallel
anti-parallel
A
VAL
17
A
VAL
20
A
GLU
19
A
GLU
22
A
ILE
67
A
ILE
70
A
ASP
72
A
ASP
75
A
VAL
37
A
VAL
40
A
PHE
42
A
PHE
45
A
THR
91
A
THR
94
A
LYS
96
A
LYS
99
A
SER
99
A
SER
102
A
THR
105
A
THR
108
4
P 1 21 1