1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Berjanskii, M.V.
Riley, M.I.
Xie, A.
Semenchenko, V.
Folk, W.R.
Van Doren, S.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
36094
36103
10.1074/jbc.M006572200
10950962
NMR structure of the N-terminal J domain of murine polyomavirus T antigens. Implications for DnaJ-like domains and for mutations of T antigens.
2000
10.2210/pdb1faf/pdb
pdb_00001faf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9175.588
LARGE T ANTIGEN
N-TERMINAL DOMAIN
1
man
polymer
no
no
MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGTGFQ
MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGTGFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Polyomavirus
Escherichia
sample
10634
Murine polyomavirus
562
Escherichia coli
PLASMID
PET15B
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-11-22
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2000-07-13
REL
REL
STRUCTURES WITH FAVORABLE NON-BOND ENERGY,STRUCTURES WITH THE LOWEST ENERGY
100
47
3D_15N-SEPARATED_NOESY- HSQC
100MS MIXING
3D_ 13C-SEPARATED_FSCT-HSMQC -NOESY
100MS MIXING
3D_13C-SEPARATED_NOESY- HMQC
100MS MIXING
3D_ 13C-SEPARATED_NOESY- CTHSQC
200MS MIXING
HNCA-J
HACAHB-COSY
HNHB
H-D EXCHANGE DETECTED BY 15N HSQC
25mM_PHOSPHATE/100mM_KCL
6.00
1
atm
303.00
K
TORSION ANGLE DYNAMICS AND SIMULATED ANNEALING IN CARTESIAN SPACE
12
1.7 MM PYJ U-15N; 25 MM PHOSPHATE BUFFER, 100MM KCL
structure solution
XwinNMR
1.3
structure solution
SYBYL TRIAD
6.3
structure solution
CNS
1.0
refinement
CNS
1.0
500
Bruker
DRX
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
ARG
3
n
3
ARG
3
A
VAL
4
n
4
VAL
4
A
LEU
5
n
5
LEU
5
A
SER
6
n
6
SER
6
A
ARG
7
n
7
ARG
7
A
ALA
8
n
8
ALA
8
A
ASP
9
n
9
ASP
9
A
LYS
10
n
10
LYS
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
LEU
13
n
13
LEU
13
A
LEU
14
n
14
LEU
14
A
GLU
15
n
15
GLU
15
A
LEU
16
n
16
LEU
16
A
LEU
17
n
17
LEU
17
A
LYS
18
n
18
LYS
18
A
LEU
19
n
19
LEU
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
TRP
24
n
24
TRP
24
A
GLY
25
n
25
GLY
25
A
ASP
26
n
26
ASP
26
A
PHE
27
n
27
PHE
27
A
GLY
28
n
28
GLY
28
A
ARG
29
n
29
ARG
29
A
MET
30
n
30
MET
30
A
GLN
31
n
31
GLN
31
A
GLN
32
n
32
GLN
32
A
ALA
33
n
33
ALA
33
A
TYR
34
n
34
TYR
34
A
LYS
35
n
35
LYS
35
A
GLN
36
n
36
GLN
36
A
GLN
37
n
37
GLN
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
LEU
40
n
40
LEU
40
A
LEU
41
n
41
LEU
41
A
HIS
42
n
42
HIS
42
A
PRO
43
n
43
PRO
43
A
ASP
44
n
44
ASP
44
A
LYS
45
n
45
LYS
45
A
GLY
46
n
46
GLY
46
A
GLY
47
n
47
GLY
47
A
SER
48
n
48
SER
48
A
HIS
49
n
49
HIS
49
A
ALA
50
n
50
ALA
50
A
LEU
51
n
51
LEU
51
A
MET
52
n
52
MET
52
A
GLN
53
n
53
GLN
53
A
GLU
54
n
54
GLU
54
A
LEU
55
n
55
LEU
55
A
ASN
56
n
56
ASN
56
A
SER
57
n
57
SER
57
A
LEU
58
n
58
LEU
58
A
TRP
59
n
59
TRP
59
A
GLY
60
n
60
GLY
60
A
THR
61
n
61
THR
61
A
PHE
62
n
62
PHE
62
A
LYS
63
n
63
LYS
63
A
THR
64
n
64
THR
64
A
GLU
65
n
65
GLU
65
A
VAL
66
n
66
VAL
66
A
TYR
67
n
67
TYR
67
A
ASN
68
n
68
ASN
68
A
LEU
69
n
69
LEU
69
A
ARG
70
n
70
ARG
70
A
MET
71
n
71
MET
71
A
ASN
72
n
72
ASN
72
A
LEU
73
n
73
LEU
73
A
GLY
74
n
74
GLY
74
A
GLY
75
n
75
GLY
75
A
THR
76
n
76
THR
76
A
GLY
77
n
77
GLY
77
A
PHE
78
n
78
PHE
78
A
GLN
79
n
79
GLN
79
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
LYS
18
54.25
19.26
1
A
PRO
20
-46.83
167.21
1
A
TRP
24
-55.69
108.31
2
A
ASP
2
-129.71
-64.91
2
A
PRO
20
-46.06
167.03
2
A
TRP
24
-56.05
97.58
2
A
ASN
72
-101.41
-73.24
3
A
LYS
18
55.55
19.44
3
A
TRP
24
-55.01
105.81
3
A
ASN
72
-60.02
99.42
4
A
ASP
2
-66.11
-174.02
4
A
LYS
18
56.03
19.20
4
A
TRP
24
-55.38
106.21
4
A
PRO
43
-58.03
-2.92
5
A
ASP
2
-67.72
-169.07
5
A
LYS
18
53.94
19.66
5
A
PRO
20
-49.60
168.83
5
A
TRP
24
-58.24
89.04
5
A
LEU
73
-128.19
-63.16
6
A
PRO
20
-49.41
170.73
6
A
TRP
24
-52.31
101.15
6
A
PRO
43
-47.89
-12.91
6
A
ASN
72
-92.67
37.62
7
A
ARG
3
-100.33
77.90
7
A
PRO
20
-45.41
166.55
7
A
MET
71
-124.34
-62.34
8
A
LYS
18
55.31
19.77
8
A
PRO
20
-45.95
167.74
8
A
TRP
24
-52.94
97.96
8
A
ASN
72
-93.13
-71.90
8
A
LEU
73
-94.78
-70.80
9
A
LYS
18
53.12
19.98
9
A
PRO
20
-45.48
164.43
9
A
TRP
24
-51.59
100.69
10
A
LYS
18
53.12
19.98
10
A
PRO
20
-45.48
164.43
10
A
TRP
24
-51.59
100.69
11
A
PRO
20
-46.38
167.05
11
A
TRP
24
-55.68
92.50
11
A
ARG
70
-68.51
0.91
12
A
LYS
18
54.15
19.70
12
A
PRO
20
-49.43
169.69
12
A
TRP
24
-57.60
97.75
13
A
LYS
18
55.00
18.52
13
A
PRO
20
-46.70
-176.40
13
A
TRP
24
-53.65
92.63
13
A
ASP
26
-57.28
97.51
13
A
MET
71
-121.42
-52.76
13
A
LEU
73
-142.00
-52.01
14
A
LYS
18
48.98
21.25
14
A
PRO
20
-48.37
167.40
14
A
TRP
24
-52.08
109.60
14
A
PRO
43
-46.69
-19.54
14
A
ASN
72
-94.83
39.79
14
A
LEU
73
-136.29
-73.48
15
A
LYS
18
54.44
19.69
15
A
PRO
20
-47.04
168.30
15
A
TRP
24
-56.02
104.27
16
A
LEU
73
-129.25
-67.01
17
A
ASP
2
-64.55
-175.03
17
A
ARG
3
-104.08
71.53
17
A
LYS
18
55.22
19.35
17
A
PRO
20
-45.53
167.60
17
A
TRP
24
-56.47
97.40
17
A
LEU
73
-93.38
39.42
18
A
ASP
2
-125.50
-70.71
18
A
LYS
18
55.78
19.07
18
A
PRO
20
-47.02
166.85
18
A
TRP
24
-55.63
96.47
19
A
LYS
18
54.45
19.79
19
A
PRO
20
-46.63
169.29
19
A
TRP
24
-50.55
108.26
20
A
PRO
20
-47.22
168.31
20
A
TRP
24
-55.89
105.71
20
A
ASN
72
-67.94
-171.71
21
A
PRO
20
-47.99
167.92
21
A
TRP
24
-53.74
96.79
22
A
PRO
20
-48.72
169.11
22
A
TRP
24
-50.66
99.71
22
A
MET
71
-125.11
-60.61
23
A
LYS
18
55.85
18.62
23
A
PRO
20
-58.08
173.91
23
A
TRP
24
-52.85
104.89
24
A
ASP
2
-171.08
-41.63
24
A
ARG
3
-115.67
77.20
24
A
PRO
20
-47.16
168.00
24
A
ASN
72
-101.21
-63.97
25
A
LYS
18
53.96
18.05
25
A
PRO
20
-50.81
-179.81
25
A
TRP
24
-51.62
93.07
25
A
ASP
26
-61.27
82.67
25
A
THR
76
-124.10
-53.79
26
A
PRO
20
-51.66
170.91
26
A
TRP
24
-54.47
100.52
27
A
PRO
20
-47.07
166.08
27
A
TRP
24
-52.13
101.99
27
A
ASN
72
-90.45
-73.00
28
A
ASP
2
-143.39
-56.72
28
A
PRO
20
-48.33
168.52
28
A
LEU
73
-141.91
-38.39
29
A
ASP
2
-143.39
-56.72
29
A
PRO
20
-48.33
168.52
29
A
LEU
73
-141.91
-38.39
30
A
ARG
3
-106.27
75.72
30
A
PRO
20
-49.26
174.34
30
A
TRP
24
-53.88
90.31
30
A
ASN
72
-60.63
93.69
31
A
LYS
18
55.38
19.55
31
A
PRO
20
-48.21
169.15
31
A
TRP
24
-53.36
98.32
31
A
LEU
73
-136.18
-57.04
32
A
LYS
18
53.68
19.85
32
A
PRO
20
-46.06
166.26
32
A
TRP
24
-52.75
100.98
32
A
LYS
45
-99.92
31.01
33
A
ASP
2
-156.29
-36.75
33
A
PRO
20
-47.53
168.17
33
A
TRP
24
-51.88
97.19
33
A
PRO
43
-45.61
-16.30
34
A
LYS
18
54.40
19.05
34
A
PRO
20
-46.19
168.24
35
A
PRO
20
-43.98
166.92
35
A
TRP
24
-52.60
100.46
36
A
LYS
18
53.44
18.89
36
A
PRO
20
-52.67
176.61
36
A
ASP
26
-63.93
89.96
36
A
LEU
73
-120.00
78.41
37
A
LYS
18
52.93
19.07
37
A
PRO
20
-52.25
170.81
37
A
TRP
24
-49.37
100.85
37
A
LEU
73
-123.94
-61.34
38
A
LYS
18
55.19
19.10
38
A
PRO
20
-47.21
169.91
38
A
TRP
24
-52.93
102.44
38
A
ASN
72
-97.53
-67.46
38
A
LEU
73
-69.69
79.13
39
A
LYS
18
53.93
19.50
39
A
PRO
20
-46.48
166.07
39
A
TRP
24
-54.84
98.37
39
A
PHE
78
-89.97
31.52
40
A
LYS
18
55.50
18.73
40
A
PRO
20
-52.18
-179.48
40
A
ASP
26
-58.72
93.84
40
A
LYS
45
-99.14
30.33
40
A
LEU
73
-97.63
41.68
41
A
ASP
2
-128.00
-71.39
41
A
LYS
18
55.31
19.11
41
A
PRO
20
-39.92
165.02
41
A
TRP
24
-44.68
98.29
42
A
ASP
2
-62.41
-174.97
42
A
PRO
20
-49.57
170.06
42
A
TRP
24
-51.73
92.54
42
A
LYS
45
-95.46
31.08
43
A
ASP
2
-171.04
-64.80
43
A
PRO
20
-48.88
165.08
43
A
PHE
78
-57.95
179.95
44
A
LYS
18
55.14
19.05
44
A
PRO
20
-44.49
167.28
44
A
TRP
24
-47.49
93.53
44
A
LEU
73
-129.98
-67.35
45
A
LYS
18
54.47
19.89
45
A
PRO
20
-49.32
169.92
45
A
ASN
72
-59.74
108.62
45
A
LEU
73
-123.51
-58.77
46
A
LYS
18
54.39
19.80
46
A
PRO
20
-42.54
165.90
46
A
TRP
24
-52.72
109.49
47
A
LYS
18
55.63
19.01
47
A
PRO
20
-46.55
169.39
47
A
TRP
24
-54.87
92.37
47
A
ASN
72
-101.54
-73.40
47
A
LEU
73
-89.85
36.47
NMR STRUCTURE OF THE N-TERMINAL J DOMAIN OF MURINE POLYOMAVIRUS T ANTIGENS.
1
N
N
A
SER
6
A
SER
6
HELX_P
A
LYS
18
A
LYS
18
1
1
13
A
ASP
26
A
ASP
26
HELX_P
A
LEU
41
A
LEU
41
1
2
16
A
HIS
42
A
HIS
42
HELX_P
A
GLY
46
A
GLY
46
5
3
5
A
SER
48
A
SER
48
HELX_P
A
ARG
70
A
ARG
70
1
4
23
VIRAL PROTEIN
J DOMAIN, HPD MOTIF, ANTI-PARALLEL HAIRPIN OF HELICES, Viral protein
TALA_POVM3
UNP
1
1
P03074
MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGTGFQG
SPPRTAERGTEESGHSPLHDDYWSFSYGSKYFTREWNDFFRKWDPSYQSPPKTAESSEQPDLFCYEEPLLSPNPSSPTDT
PAHTAGRRRNPCVAEPDDSISPDPPRTPVSRKRPRPAGATGGGGGGVHANGGSVFGHPTGGTSTPAHPPPYHSQGGSESM
GGSDSSGFAEGSFRSDPRCESENESYSQSCSQSSFNATPPKKAREDPAPSDFPSSLTGYLSHAIYSNKTFPAFLVYSTKE
KCKQLYDTIGKFRPEFKCLVHYEEGGMLFFLTMTKHRVSAVKNYCSKLCSVSFLMCKAVTKPMECYQVVTAAPFQLITEN
KPGLHQFEFTDEPEEQKAVDWIMVADFALENNLDDPLLIMGYYLDFAKEVPSCIKCSKEETRLQIHWKNHRKHAENADLF
LNCKAQKTICQQAADGVLASRRLKLVECTRSQLLKERLQQSLLRLKELGSSDALLYLAGVAWYQCLLEDFPQTLFKMLKL
LTENVPKRRNILFRGPVNSGKTGLAAALISLLGGKSLNINCPADKLAFELGVAQDQFVVCFEDVKGQIALNKQLQPGMGV
ANLDNLRDYLDTSVKVNLEKKHSNKRSQLFPPCVCTMNEYLLPQTVWARFHMVLDFTCKPHLAQSLEKCEFLQRERIIQS
GDTLALLLIWNFTSDVFDPDIQGLVKEVRDQFASECSYSLFCDILCNVQEGDDPLKDICEYS
1
79
1FAF
1
79
P03074
A
1
1
79
1
P 1