0.024586
0.000000
0.000000
0.000000
0.021611
0.000000
0.000000
0.000000
0.015446
0.00000
0.00000
0.00000
Ferguson, K.M.
Kavran, J.M.
Sankaran, V.G.
Fournier, E.
Isakoff, S.J.
Skolnik, E.Y.
Lemmon, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.674
46.273
64.743
C6 H16 O18 P4
500.075
INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
S
C
N
4
N
O
N
5
S
C
N
6
N
O
N
7
N
C
N
8
N
O
N
9
R
C
N
10
N
O
N
11
S
C
N
12
N
O
N
13
N
P
N
14
N
O
N
15
N
O
N
16
N
O
N
17
N
P
N
18
N
O
N
19
N
O
N
20
N
O
N
21
N
P
N
22
N
O
N
23
N
O
N
24
N
O
N
25
N
P
N
26
N
O
N
27
N
O
N
28
N
O
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
N
N
46
S
C
N
47
N
C
N
48
N
O
N
49
N
C
N
50
N
O
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
C
N
65
N
N
N
66
N
C
N
67
N
N
N
68
N
N
N
69
N
O
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
O
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
R
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
S
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
N
C
Y
186
N
C
Y
187
N
N
Y
188
N
C
Y
189
N
C
Y
190
N
N
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
S
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
N
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
S
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
N
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
6
373
384
10.1016/S1097-2765(00)00037-X
10983984
Structural basis for discrimination of 3-phosphoinositides by pleckstrin homology domains.
2000
10.2210/pdb1fao/pdb
pdb_00001fao
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-02-10
BRANDEIS - B4
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
X25
NSLS
1.0
SYNCHROTRON
NSLS BEAMLINE X25
COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE
14805.023
DUAL ADAPTOR OF PHOSPHOTYROSINE AND 3-PHOSPHOINOSITIDES
PLECKSTRIN HOMOLOGY DOMAIN
1
man
polymer
500.075
INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
1
syn
non-polymer
18.015
water
105
nat
water
DAPP1, PHISH, BAM32
no
no
MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC
FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR
MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC
FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PET11A
1
2.06
35
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 3450, Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2000-07-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM DAPP1/PHISH
RCSB
Y
RCSB
2000-07-13
REL
4IP
INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
HOH
water
1FB8
PDB ID 1FB8: UNLIGANDED DAPP1
PDB
experimental model
ITS
1
2
4IP
4IP
274
A
TIP
1
3
HOH
HOH
1
A
TIP
2
3
HOH
HOH
2
A
TIP
3
3
HOH
HOH
3
A
TIP
4
3
HOH
HOH
4
A
TIP
5
3
HOH
HOH
5
A
TIP
6
3
HOH
HOH
6
A
TIP
7
3
HOH
HOH
7
A
TIP
8
3
HOH
HOH
8
A
TIP
9
3
HOH
HOH
9
A
TIP
10
3
HOH
HOH
10
A
TIP
11
3
HOH
HOH
11
A
TIP
12
3
HOH
HOH
12
A
TIP
13
3
HOH
HOH
13
A
TIP
14
3
HOH
HOH
14
A
TIP
15
3
HOH
HOH
15
A
TIP
16
3
HOH
HOH
16
A
TIP
17
3
HOH
HOH
17
A
TIP
18
3
HOH
HOH
18
A
TIP
19
3
HOH
HOH
19
A
TIP
20
3
HOH
HOH
20
A
TIP
21
3
HOH
HOH
21
A
TIP
22
3
HOH
HOH
22
A
TIP
23
3
HOH
HOH
23
A
TIP
24
3
HOH
HOH
24
A
TIP
25
3
HOH
HOH
25
A
TIP
26
3
HOH
HOH
26
A
TIP
27
3
HOH
HOH
27
A
TIP
28
3
HOH
HOH
28
A
TIP
29
3
HOH
HOH
29
A
TIP
30
3
HOH
HOH
30
A
TIP
31
3
HOH
HOH
31
A
TIP
32
3
HOH
HOH
32
A
TIP
33
3
HOH
HOH
33
A
TIP
34
3
HOH
HOH
34
A
TIP
35
3
HOH
HOH
35
A
TIP
36
3
HOH
HOH
36
A
TIP
37
3
HOH
HOH
37
A
TIP
38
3
HOH
HOH
38
A
TIP
39
3
HOH
HOH
39
A
TIP
40
3
HOH
HOH
40
A
TIP
41
3
HOH
HOH
41
A
TIP
42
3
HOH
HOH
42
A
TIP
43
3
HOH
HOH
43
A
TIP
44
3
HOH
HOH
44
A
TIP
45
3
HOH
HOH
45
A
TIP
46
3
HOH
HOH
46
A
TIP
47
3
HOH
HOH
47
A
TIP
48
3
HOH
HOH
48
A
TIP
49
3
HOH
HOH
49
A
TIP
50
3
HOH
HOH
50
A
TIP
51
3
HOH
HOH
51
A
TIP
52
3
HOH
HOH
52
A
TIP
53
3
HOH
HOH
53
A
TIP
54
3
HOH
HOH
54
A
TIP
55
3
HOH
HOH
55
A
TIP
56
3
HOH
HOH
56
A
TIP
57
3
HOH
HOH
57
A
TIP
58
3
HOH
HOH
58
A
TIP
59
3
HOH
HOH
59
A
TIP
60
3
HOH
HOH
60
A
TIP
61
3
HOH
HOH
61
A
TIP
62
3
HOH
HOH
62
A
TIP
63
3
HOH
HOH
63
A
TIP
64
3
HOH
HOH
64
A
TIP
65
3
HOH
HOH
65
A
TIP
66
3
HOH
HOH
66
A
TIP
67
3
HOH
HOH
67
A
TIP
68
3
HOH
HOH
68
A
TIP
69
3
HOH
HOH
69
A
TIP
70
3
HOH
HOH
70
A
TIP
71
3
HOH
HOH
71
A
TIP
72
3
HOH
HOH
72
A
TIP
73
3
HOH
HOH
73
A
TIP
74
3
HOH
HOH
74
A
TIP
75
3
HOH
HOH
75
A
TIP
76
3
HOH
HOH
76
A
TIP
77
3
HOH
HOH
77
A
TIP
78
3
HOH
HOH
78
A
TIP
79
3
HOH
HOH
79
A
TIP
80
3
HOH
HOH
80
A
TIP
81
3
HOH
HOH
81
A
TIP
82
3
HOH
HOH
82
A
TIP
83
3
HOH
HOH
83
A
TIP
84
3
HOH
HOH
84
A
TIP
85
3
HOH
HOH
85
A
TIP
86
3
HOH
HOH
86
A
TIP
87
3
HOH
HOH
87
A
TIP
88
3
HOH
HOH
88
A
TIP
89
3
HOH
HOH
89
A
TIP
90
3
HOH
HOH
90
A
TIP
91
3
HOH
HOH
91
A
TIP
92
3
HOH
HOH
92
A
TIP
93
3
HOH
HOH
93
A
TIP
94
3
HOH
HOH
94
A
TIP
95
3
HOH
HOH
95
A
TIP
96
3
HOH
HOH
96
A
TIP
97
3
HOH
HOH
97
A
TIP
98
3
HOH
HOH
98
A
TIP
99
3
HOH
HOH
99
A
TIP
100
3
HOH
HOH
100
A
TIP
101
3
HOH
HOH
101
A
TIP
102
3
HOH
HOH
102
A
TIP
103
3
HOH
HOH
103
A
TIP
104
3
HOH
HOH
104
A
TIP
105
3
HOH
HOH
105
A
n
1
148
A
n
2
149
A
n
3
150
A
n
4
151
A
n
5
152
A
n
6
153
A
n
7
154
A
n
8
155
A
n
9
156
A
n
10
157
A
n
11
158
A
n
12
159
A
n
13
160
A
n
14
161
A
PRO
162
n
15
PRO
162
A
SER
163
n
16
SER
163
A
LEU
164
n
17
LEU
164
A
GLY
165
n
18
GLY
165
A
THR
166
n
19
THR
166
A
LYS
167
n
20
LYS
167
A
GLU
168
n
21
GLU
168
A
GLY
169
n
22
GLY
169
A
TYR
170
n
23
TYR
170
A
LEU
171
n
24
LEU
171
A
THR
172
n
25
THR
172
A
LYS
173
n
26
LYS
173
A
GLN
174
n
27
GLN
174
A
GLY
175
n
28
GLY
175
A
GLY
176
n
29
GLY
176
A
LEU
177
n
30
LEU
177
A
VAL
178
n
31
VAL
178
A
LYS
179
n
32
LYS
179
A
THR
180
n
33
THR
180
A
TRP
181
n
34
TRP
181
A
LYS
182
n
35
LYS
182
A
THR
183
n
36
THR
183
A
ARG
184
n
37
ARG
184
A
TRP
185
n
38
TRP
185
A
PHE
186
n
39
PHE
186
A
THR
187
n
40
THR
187
A
LEU
188
n
41
LEU
188
A
HIS
189
n
42
HIS
189
A
ARG
190
n
43
ARG
190
A
ASN
191
n
44
ASN
191
A
GLU
192
n
45
GLU
192
A
LEU
193
n
46
LEU
193
A
LYS
194
n
47
LYS
194
A
TYR
195
n
48
TYR
195
A
PHE
196
n
49
PHE
196
A
LYS
197
n
50
LYS
197
A
ASP
198
n
51
ASP
198
A
GLN
199
n
52
GLN
199
A
MET
200
n
53
MET
200
A
SER
201
n
54
SER
201
A
PRO
202
n
55
PRO
202
A
GLU
203
n
56
GLU
203
A
PRO
204
n
57
PRO
204
A
ILE
205
n
58
ILE
205
A
ARG
206
n
59
ARG
206
A
ILE
207
n
60
ILE
207
A
LEU
208
n
61
LEU
208
A
ASP
209
n
62
ASP
209
A
LEU
210
n
63
LEU
210
A
THR
211
n
64
THR
211
A
GLU
212
n
65
GLU
212
A
CYS
213
n
66
CYS
213
A
SER
214
n
67
SER
214
A
ALA
215
n
68
ALA
215
A
VAL
216
n
69
VAL
216
A
GLN
217
n
70
GLN
217
A
PHE
218
n
71
PHE
218
A
ASP
219
n
72
ASP
219
A
TYR
220
n
73
TYR
220
A
SER
221
n
74
SER
221
A
GLN
222
n
75
GLN
222
A
GLU
223
n
76
GLU
223
A
ARG
224
n
77
ARG
224
A
VAL
225
n
78
VAL
225
A
ASN
226
n
79
ASN
226
A
CYS
227
n
80
CYS
227
A
PHE
228
n
81
PHE
228
A
CYS
229
n
82
CYS
229
A
LEU
230
n
83
LEU
230
A
VAL
231
n
84
VAL
231
A
PHE
232
n
85
PHE
232
A
PRO
233
n
86
PRO
233
A
PHE
234
n
87
PHE
234
A
ARG
235
n
88
ARG
235
A
THR
236
n
89
THR
236
A
PHE
237
n
90
PHE
237
A
TYR
238
n
91
TYR
238
A
LEU
239
n
92
LEU
239
A
CYS
240
n
93
CYS
240
A
ALA
241
n
94
ALA
241
A
LYS
242
n
95
LYS
242
A
THR
243
n
96
THR
243
A
GLY
244
n
97
GLY
244
A
VAL
245
n
98
VAL
245
A
GLU
246
n
99
GLU
246
A
ALA
247
n
100
ALA
247
A
ASP
248
n
101
ASP
248
A
GLU
249
n
102
GLU
249
A
TRP
250
n
103
TRP
250
A
ILE
251
n
104
ILE
251
A
LYS
252
n
105
LYS
252
A
ILE
253
n
106
ILE
253
A
LEU
254
n
107
LEU
254
A
ARG
255
n
108
ARG
255
A
TRP
256
n
109
TRP
256
A
LYS
257
n
110
LYS
257
A
LEU
258
n
111
LEU
258
A
SER
259
n
112
SER
259
A
GLN
260
n
113
GLN
260
A
ILE
261
n
114
ILE
261
A
n
115
262
A
n
116
263
A
n
117
264
A
n
118
265
A
n
119
266
A
n
120
267
A
n
121
268
A
n
122
269
A
n
123
270
A
n
124
271
A
n
125
272
A
n
126
273
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
208
A
O
LEU
61
A
N
LEU
193
A
N
LEU
46
A
N
PHE
196
A
N
PHE
49
A
O
TRP
185
A
O
TRP
38
A
N
LEU
188
A
N
LEU
41
A
O
LYS
167
A
O
LYS
20
A
N
GLN
174
A
N
GLN
27
A
O
TYR
238
A
O
TYR
91
A
N
LEU
239
A
N
LEU
92
A
O
PHE
228
A
O
PHE
81
A
N
VAL
231
A
N
VAL
84
A
O
ALA
215
A
O
ALA
68
1
A
MET
148
A
MET
1
1
Y
1
A
GLN
149
A
GLN
2
1
Y
1
A
THR
150
A
THR
3
1
Y
1
A
GLY
151
A
GLY
4
1
Y
1
A
ARG
152
A
ARG
5
1
Y
1
A
THR
153
A
THR
6
1
Y
1
A
GLU
154
A
GLU
7
1
Y
1
A
ASP
155
A
ASP
8
1
Y
1
A
ASP
156
A
ASP
9
1
Y
1
A
LEU
157
A
LEU
10
1
Y
1
A
VAL
158
A
VAL
11
1
Y
1
A
PRO
159
A
PRO
12
1
Y
1
A
THR
160
A
THR
13
1
Y
1
A
ALA
161
A
ALA
14
1
Y
1
A
ARG
262
A
ARG
115
1
Y
1
A
LYS
263
A
LYS
116
1
Y
1
A
GLN
264
A
GLN
117
1
Y
1
A
LEU
265
A
LEU
118
1
Y
1
A
ASN
266
A
ASN
119
1
Y
1
A
GLN
267
A
GLN
120
1
Y
1
A
GLY
268
A
GLY
121
1
Y
1
A
GLU
269
A
GLU
122
1
Y
1
A
GLY
270
A
GLY
123
1
Y
1
A
THR
271
A
THR
124
1
Y
1
A
ILE
272
A
ILE
125
1
Y
1
A
ARG
273
A
ARG
126
1
Y
1
A
LYS
179
-80.83
44.91
1
A
ARG
190
55.69
-126.76
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
CARBOHYDRATE.PARAM
CARBOHYDRATE.TOP
PARAM.IP4
TOP.IP4
16.5
2.51
0.00
0.00
-2.97
0.00
0.46
0.232
0.007
0.219
1.80
30.0
1083
11421
11421
9.5
96.4
RANDOM
0.00000
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PDB ID 1FB8: UNLIGANDED DAPP1
Engh & Huber
FLAT MODEL
40.12
0.398
0.23
0.22
5.00
0.13
0.03
1.80
30.0
105
971
28
0
838
0.005
1.3
23.9
0.72
1.62
1.50
2.01
2.00
2.72
2.00
3.45
2.50
0.277
0.020
0.226
1.91
201
1722
6
10.5
99.2
10.0
1.8
50.0
1FAO
11260
11260
0.0
0.0
0.04
0.04
1
26.6
4.5
94.8
0.05
1.80
1.85
29.0
966
0.05
4
99.4
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
0.9
STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM DAPP1/PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE
1
N
N
2
N
N
3
N
N
The biological assembly is a monomer
A
THR
211
A
THR
64
HELX_P
A
CYS
213
A
CYS
66
5
1
3
A
THR
243
A
THR
96
HELX_P
A
GLN
260
A
GLN
113
1
2
18
disulf
2.035
A
CYS
227
A
SG
CYS
80
1_555
A
CYS
240
A
SG
CYS
93
1_555
SIGNALING PROTEIN
PLECKSTRIN, 3-PHOSPHOINOSITIDES, INOSITOL TETRAKISPHOSPHATE SIGNAL TRANSDUCTION PROTEIN, ADAPTOR PROTEIN, SIGNALING PROTEIN
DAPP1_HUMAN
UNP
1
148
Q9UN19
MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC
FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR
148
273
1FAO
148
273
Q9UN19
A
1
1
126
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
206
A
ARG
59
A
ASP
209
A
ASP
62
A
GLU
192
A
GLU
45
A
PHE
196
A
PHE
49
A
TRP
181
A
TRP
34
A
HIS
189
A
HIS
42
A
LYS
167
A
LYS
20
A
GLN
174
A
GLN
27
A
ARG
235
A
ARG
88
A
CYS
240
A
CYS
93
A
CYS
227
A
CYS
80
A
PHE
232
A
PHE
85
A
ALA
215
A
ALA
68
A
ASP
219
A
ASP
72
BINDING SITE FOR RESIDUE 4IP A 274
A
4IP
274
Software
21
A
HOH
1
C
HOH
21
1_555
A
HOH
31
C
HOH
21
1_555
A
HOH
57
C
HOH
21
1_555
A
HOH
64
C
HOH
21
1_555
A
HOH
80
C
HOH
21
1_555
A
HOH
91
C
HOH
21
1_555
A
HOH
102
C
HOH
21
1_555
A
HOH
103
C
HOH
21
1_555
A
LYS
173
A
LYS
26
21
1_555
A
GLY
175
A
GLY
28
21
1_555
A
GLY
176
A
GLY
29
21
1_555
A
LEU
177
A
LEU
30
21
1_555
A
VAL
178
A
VAL
31
21
1_555
A
THR
180
A
THR
33
21
1_555
A
LYS
182
A
LYS
35
21
1_555
A
ARG
184
A
ARG
37
21
1_555
A
TYR
195
A
TYR
48
21
1_555
A
LYS
197
A
LYS
50
21
1_555
A
ILE
205
A
ILE
58
21
1_555
A
ARG
235
A
ARG
88
21
1_555
A
LYS
242
A
LYS
95
21
3_645
19
P 21 21 21