0.017565
0.000000
0.000000
0.000000
0.013667
0.000000
0.000000
0.000000
0.012645
0.00000
0.00000
0.00000
Brandstetter, H.
Engh, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
56.930
73.170
79.080
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C26 H28 N4 O3
444.526
(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3R)-1-[(1Z)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid
DX9056A
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
271
29988
29992
10.1074/jbc.271.47.29988
8939944
X-ray structure of active site-inhibited clotting factor Xa. Implications for drug design and substrate recognition.
1996
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
92
9796
X-Ray Structure of Clotting Factor Ixa: Active Site and Module Structure Related to Xase Activity and Hemophilia B
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
232
947
Structure of Human Des(1-45) Factor Xa at 2.2 A Resolution
1993
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
197
965
A Novel Factor Xa Inhibitor: Structure-Activity Relationships and Selectivity between Factor Xa and Thrombin
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
AREA DETECTOR
1995-09-15
SIEMENS
M
x-ray
1
1.5418
1.0
1.5418
28435.510
FACTOR XA
3.4.21.6
PROTEOLYTIC CLEAVAGE PRODUCT, GLA DOMAIN, RESIDUES 1 - 44 OF THE LIGHT CHAIN, ARE REMOVED
1
man
polymer
10490.688
FACTOR XA
3.4.21.6
PROTEOLYTIC CLEAVAGE PRODUCT, GLA DOMAIN, RESIDUES 1 - 44 OF THE LIGHT CHAIN, ARE REMOVED
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
444.526
(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3R)-1-[(1Z)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid
1
syn
non-polymer
STUART FACTOR
STUART FACTOR
no
no
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTAAEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA
KSHAPEVITSSPLK
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTAAEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA
KSHAPEVITSSPLK
A
polypeptide(L)
no
no
YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKA
CIPTGPYPCGKQTLER
YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKA
CIPTGPYPCGKQTLER
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
BLOOD
sample
9606
Homo sapiens
human
Homo
BLOOD
sample
9606
Homo sapiens
2.11
41.84
repository
Initial release
Version format compliance
Version format compliance
1
0
1997-10-29
1
1
2008-03-10
1
2
2011-07-13
Y
BNL
1996-08-23
REL
CA
CALCIUM ION
DX9
(2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3R)-1-[(1Z)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid
EGF1 DOMAIN IS DISORDERED IN THE CRYSTAL.
CA
1
3
CA
CA
1
A
DX9
1
4
DX9
DX9
265
A
ILE
16
n
1
ILE
16
A
VAL
17
n
2
VAL
17
A
GLY
18
n
3
GLY
18
A
GLY
19
n
4
GLY
19
A
GLN
20
n
5
GLN
20
A
GLU
21
n
6
GLU
21
A
CYS
22
n
7
CYS
22
A
LYS
23
n
8
LYS
23
A
ASP
24
n
9
ASP
24
A
GLY
25
n
10
GLY
25
A
GLU
26
n
11
GLU
26
A
CYS
27
n
12
CYS
27
A
PRO
28
n
13
PRO
28
A
TRP
29
n
14
TRP
29
A
GLN
30
n
15
GLN
30
A
ALA
31
n
16
ALA
31
A
LEU
32
n
17
LEU
32
A
LEU
33
n
18
LEU
33
A
ILE
34
n
19
ILE
34
A
ASN
35
n
20
ASN
35
A
GLU
36
n
21
GLU
36
A
GLU
37
n
22
GLU
37
A
ASN
38
n
23
ASN
38
A
GLU
39
n
24
GLU
39
A
GLY
40
n
25
GLY
40
A
PHE
41
n
26
PHE
41
A
CYS
42
n
27
CYS
42
A
GLY
43
n
28
GLY
43
A
GLY
44
n
29
GLY
44
A
THR
45
n
30
THR
45
A
ILE
46
n
31
ILE
46
A
LEU
47
n
32
LEU
47
A
SER
48
n
33
SER
48
A
GLU
49
n
34
GLU
49
A
PHE
50
n
35
PHE
50
A
TYR
51
n
36
TYR
51
A
ILE
52
n
37
ILE
52
A
LEU
53
n
38
LEU
53
A
THR
54
n
39
THR
54
A
ALA
55
n
40
ALA
55
A
ALA
56
n
41
ALA
56
A
HIS
57
n
42
HIS
57
A
CYS
58
n
43
CYS
58
A
LEU
59
n
44
LEU
59
A
TYR
60
n
45
TYR
60
A
GLN
61
n
46
GLN
61
A
ALA
61
n
47
A
ALA
61
A
LYS
62
n
48
LYS
62
A
ARG
63
n
49
ARG
63
A
PHE
64
n
50
PHE
64
A
LYS
65
n
51
LYS
65
A
VAL
66
n
52
VAL
66
A
ARG
67
n
53
ARG
67
A
VAL
68
n
54
VAL
68
A
GLY
69
n
55
GLY
69
A
ASP
70
n
56
ASP
70
A
ARG
71
n
57
ARG
71
A
ASN
72
n
58
ASN
72
A
THR
73
n
59
THR
73
A
ALA
74
n
60
ALA
74
A
ALA
75
n
61
ALA
75
A
GLU
76
n
62
GLU
76
A
GLU
77
n
63
GLU
77
A
GLY
78
n
64
GLY
78
A
GLY
79
n
65
GLY
79
A
GLU
80
n
66
GLU
80
A
ALA
81
n
67
ALA
81
A
VAL
82
n
68
VAL
82
A
HIS
83
n
69
HIS
83
A
GLU
84
n
70
GLU
84
A
VAL
85
n
71
VAL
85
A
GLU
86
n
72
GLU
86
A
VAL
87
n
73
VAL
87
A
VAL
88
n
74
VAL
88
A
ILE
89
n
75
ILE
89
A
LYS
90
n
76
LYS
90
A
HIS
91
n
77
HIS
91
A
ASN
92
n
78
ASN
92
A
ARG
93
n
79
ARG
93
A
PHE
94
n
80
PHE
94
A
THR
95
n
81
THR
95
A
LYS
96
n
82
LYS
96
A
GLU
97
n
83
GLU
97
A
THR
98
n
84
THR
98
A
TYR
99
n
85
TYR
99
A
ASP
100
n
86
ASP
100
A
PHE
101
n
87
PHE
101
A
ASP
102
n
88
ASP
102
A
ILE
103
n
89
ILE
103
A
ALA
104
n
90
ALA
104
A
VAL
105
n
91
VAL
105
A
LEU
106
n
92
LEU
106
A
ARG
107
n
93
ARG
107
A
LEU
108
n
94
LEU
108
A
LYS
109
n
95
LYS
109
A
THR
110
n
96
THR
110
A
PRO
111
n
97
PRO
111
A
ILE
112
n
98
ILE
112
A
THR
113
n
99
THR
113
A
PHE
114
n
100
PHE
114
A
ARG
115
n
101
ARG
115
A
MET
116
n
102
MET
116
A
ASN
117
n
103
ASN
117
A
VAL
118
n
104
VAL
118
A
ALA
119
n
105
ALA
119
A
PRO
120
n
106
PRO
120
A
ALA
121
n
107
ALA
121
A
CYS
122
n
108
CYS
122
A
LEU
123
n
109
LEU
123
A
PRO
124
n
110
PRO
124
A
GLU
124
n
111
A
GLU
124
A
ARG
125
n
112
ARG
125
A
ASP
126
n
113
ASP
126
A
TRP
127
n
114
TRP
127
A
ALA
128
n
115
ALA
128
A
GLU
129
n
116
GLU
129
A
SER
130
n
117
SER
130
A
THR
131
n
118
THR
131
A
LEU
131
n
119
A
LEU
131
A
MET
131
n
120
B
MET
131
A
THR
132
n
121
THR
132
A
GLN
133
n
122
GLN
133
A
LYS
134
n
123
LYS
134
A
THR
135
n
124
THR
135
A
GLY
136
n
125
GLY
136
A
ILE
137
n
126
ILE
137
A
VAL
138
n
127
VAL
138
A
SER
139
n
128
SER
139
A
GLY
140
n
129
GLY
140
A
PHE
141
n
130
PHE
141
A
GLY
142
n
131
GLY
142
A
ARG
143
n
132
ARG
143
A
THR
144
n
133
THR
144
A
HIS
145
n
134
HIS
145
A
GLU
147
n
135
GLU
147
A
LYS
148
n
136
LYS
148
A
GLY
149
n
137
GLY
149
A
ARG
150
n
138
ARG
150
A
GLN
151
n
139
GLN
151
A
SER
152
n
140
SER
152
A
THR
153
n
141
THR
153
A
ARG
154
n
142
ARG
154
A
LEU
155
n
143
LEU
155
A
LYS
156
n
144
LYS
156
A
MET
157
n
145
MET
157
A
LEU
158
n
146
LEU
158
A
GLU
159
n
147
GLU
159
A
VAL
160
n
148
VAL
160
A
PRO
161
n
149
PRO
161
A
TYR
162
n
150
TYR
162
A
VAL
163
n
151
VAL
163
A
ASP
164
n
152
ASP
164
A
ARG
165
n
153
ARG
165
A
ASN
166
n
154
ASN
166
A
SER
167
n
155
SER
167
A
CYS
168
n
156
CYS
168
A
LYS
169
n
157
LYS
169
A
LEU
170
n
158
LEU
170
A
SER
171
n
159
SER
171
A
SER
172
n
160
SER
172
A
SER
173
n
161
SER
173
A
PHE
174
n
162
PHE
174
A
ILE
175
n
163
ILE
175
A
ILE
176
n
164
ILE
176
A
THR
177
n
165
THR
177
A
GLN
178
n
166
GLN
178
A
ASN
179
n
167
ASN
179
A
MET
180
n
168
MET
180
A
PHE
181
n
169
PHE
181
A
CYS
182
n
170
CYS
182
A
ALA
183
n
171
ALA
183
A
GLY
184
n
172
GLY
184
A
TYR
185
n
173
TYR
185
A
ASP
185
n
174
A
ASP
185
A
THR
185
n
175
B
THR
185
A
LYS
186
n
176
LYS
186
A
GLN
187
n
177
GLN
187
A
GLU
188
n
178
GLU
188
A
ASP
189
n
179
ASP
189
A
ALA
190
n
180
ALA
190
A
CYS
191
n
181
CYS
191
A
GLN
192
n
182
GLN
192
A
GLY
193
n
183
GLY
193
A
ASP
194
n
184
ASP
194
A
SER
195
n
185
SER
195
A
GLY
196
n
186
GLY
196
A
GLY
197
n
187
GLY
197
A
PRO
198
n
188
PRO
198
A
HIS
199
n
189
HIS
199
A
VAL
200
n
190
VAL
200
A
THR
201
n
191
THR
201
A
ARG
202
n
192
ARG
202
A
PHE
203
n
193
PHE
203
A
LYS
204
n
194
LYS
204
A
ASP
205
n
195
ASP
205
A
THR
206
n
196
THR
206
A
TYR
207
n
197
TYR
207
A
PHE
208
n
198
PHE
208
A
VAL
209
n
199
VAL
209
A
THR
210
n
200
THR
210
A
GLY
211
n
201
GLY
211
A
ILE
212
n
202
ILE
212
A
VAL
213
n
203
VAL
213
A
SER
214
n
204
SER
214
A
TRP
215
n
205
TRP
215
A
GLY
216
n
206
GLY
216
A
GLU
217
n
207
GLU
217
A
GLY
218
n
208
GLY
218
A
CYS
220
n
209
CYS
220
A
ALA
221
n
210
ALA
221
A
ARG
222
n
211
ARG
222
A
LYS
223
n
212
LYS
223
A
GLY
223
n
213
A
GLY
223
A
LYS
224
n
214
LYS
224
A
TYR
225
n
215
TYR
225
A
GLY
226
n
216
GLY
226
A
ILE
227
n
217
ILE
227
A
TYR
228
n
218
TYR
228
A
THR
229
n
219
THR
229
A
LYS
230
n
220
LYS
230
A
VAL
231
n
221
VAL
231
A
THR
232
n
222
THR
232
A
ALA
233
n
223
ALA
233
A
PHE
234
n
224
PHE
234
A
LEU
235
n
225
LEU
235
A
LYS
236
n
226
LYS
236
A
TRP
237
n
227
TRP
237
A
ILE
238
n
228
ILE
238
A
ASP
239
n
229
ASP
239
A
ARG
240
n
230
ARG
240
A
SER
241
n
231
SER
241
A
MET
242
n
232
MET
242
A
LYS
243
n
233
LYS
243
A
THR
244
n
234
THR
244
A
ARG
245
n
235
ARG
245
A
n
236
246
A
n
237
247
A
n
238
248
A
n
239
249
A
n
240
250
A
n
241
251
A
n
242
252
A
n
243
253
A
n
244
254
A
n
245
255
A
n
246
256
A
n
247
257
A
n
248
258
A
n
249
259
A
n
250
260
A
n
251
261
A
n
252
262
A
n
253
263
A
n
254
264
A
n
1
44
L
n
2
45
L
n
3
46
L
n
4
47
L
n
5
48
L
n
6
49
L
n
7
50
L
n
8
51
L
n
9
52
L
n
10
53
L
n
11
54
L
n
12
55
L
n
13
56
L
n
14
57
L
n
15
58
L
n
16
59
L
n
17
60
L
n
18
61
L
n
19
62
L
n
20
63
L
n
21
64
L
n
22
65
L
n
23
66
L
n
24
67
L
n
25
68
L
n
26
69
L
n
27
70
L
n
28
71
L
n
29
72
L
n
30
73
L
n
31
74
L
n
32
75
L
n
33
76
L
n
34
77
L
n
35
78
L
n
36
79
L
n
37
80
L
n
38
81
L
n
39
82
L
n
40
83
L
n
41
84
L
THR
85
n
42
THR
85
L
ARG
86
n
43
ARG
86
L
LYS
87
n
44
LYS
87
L
LEU
88
n
45
LEU
88
L
CYS
89
n
46
CYS
89
L
SER
90
n
47
SER
90
L
LEU
91
n
48
LEU
91
L
ASP
92
n
49
ASP
92
L
ASN
93
n
50
ASN
93
L
GLY
94
n
51
GLY
94
L
ASP
95
n
52
ASP
95
L
CYS
96
n
53
CYS
96
L
ASP
97
n
54
ASP
97
L
GLN
98
n
55
GLN
98
L
PHE
99
n
56
PHE
99
L
CYS
100
n
57
CYS
100
L
HIS
101
n
58
HIS
101
L
GLU
102
n
59
GLU
102
L
GLU
103
n
60
GLU
103
L
GLN
104
n
61
GLN
104
L
ALA
105
n
62
ALA
105
L
SER
106
n
63
SER
106
L
VAL
107
n
64
VAL
107
L
VAL
108
n
65
VAL
108
L
CYS
109
n
66
CYS
109
L
SER
110
n
67
SER
110
L
CYS
111
n
68
CYS
111
L
ALA
112
n
69
ALA
112
L
ARG
113
n
70
ARG
113
L
GLY
114
n
71
GLY
114
L
TYR
115
n
72
TYR
115
L
THR
116
n
73
THR
116
L
LEU
117
n
74
LEU
117
L
ALA
118
n
75
ALA
118
L
ASP
119
n
76
ASP
119
L
ASN
120
n
77
ASN
120
L
GLY
121
n
78
GLY
121
L
LYS
122
n
79
LYS
122
L
ALA
123
n
80
ALA
123
L
CYS
124
n
81
CYS
124
L
ILE
125
n
82
ILE
125
L
PRO
126
n
83
PRO
126
L
THR
127
n
84
THR
127
L
GLY
128
n
85
GLY
128
L
PRO
129
n
86
PRO
129
L
TYR
130
n
87
TYR
130
L
PRO
131
n
88
PRO
131
L
CYS
132
n
89
CYS
132
L
GLY
133
n
90
GLY
133
L
LYS
134
n
91
LYS
134
L
GLN
135
n
92
GLN
135
L
THR
136
n
93
THR
136
L
LEU
137
n
94
LEU
137
L
GLU
138
n
95
GLU
138
L
ARG
139
n
96
ARG
139
L
author_and_software_defined_assembly
PISA
2
dimeric
2720
-24
13740
A
ASN
72
A
O
ASN
58
1_555
A
CA
1
C
CA
CA
1_555
A
ALA
75
A
O
ALA
61
1_555
122.0
A
ASN
72
A
O
ASN
58
1_555
A
CA
1
C
CA
CA
1_555
A
GLU
80
A
OE2
GLU
66
1_555
130.8
A
ALA
75
A
O
ALA
61
1_555
A
CA
1
C
CA
CA
1_555
A
GLU
80
A
OE2
GLU
66
1_555
81.7
A
ASN
72
A
O
ASN
58
1_555
A
CA
1
C
CA
CA
1_555
A
ASP
70
A
OD1
ASP
56
1_555
65.8
A
ALA
75
A
O
ALA
61
1_555
A
CA
1
C
CA
CA
1_555
A
ASP
70
A
OD1
ASP
56
1_555
162.8
A
GLU
80
A
OE2
GLU
66
1_555
A
CA
1
C
CA
CA
1_555
A
ASP
70
A
OD1
ASP
56
1_555
82.2
A
ASN
72
A
O
ASN
58
1_555
A
CA
1
C
CA
CA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
135.2
A
ALA
75
A
O
ALA
61
1_555
A
CA
1
C
CA
CA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
102.7
A
GLU
80
A
OE2
GLU
66
1_555
A
CA
1
C
CA
CA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
52.5
A
ASP
70
A
OD1
ASP
56
1_555
A
CA
1
C
CA
CA
1_555
A
GLU
80
A
OE1
GLU
66
1_555
71.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
81
A
O
ALA
67
A
N
VAL
68
A
N
VAL
54
A
O
LYS
65
A
O
LYS
51
A
N
ILE
34
A
N
ILE
19
A
O
ALA
31
A
O
ALA
16
A
N
GLY
44
A
N
GLY
29
A
O
ILE
52
A
O
ILE
37
A
N
LEU
106
A
N
LEU
92
A
O
VAL
105
A
O
VAL
91
A
N
ILE
89
A
N
ILE
75
A
O
GLY
136
A
O
GLY
125
A
N
VAL
160
A
N
VAL
148
A
O
PHE
181
A
O
PHE
169
A
N
TYR
228
A
N
TYR
218
A
O
ILE
227
A
O
ILE
217
A
N
TRP
215
A
N
TRP
205
A
O
THR
206
A
O
THR
196
A
N
PHE
203
A
N
PHE
193
L
O
THR
116
B
O
THR
73
L
N
ILE
125
B
N
ILE
82
1
A
CB
ARG
63
A
CB
ARG
49
0
Y
1
A
CG
ARG
63
A
CG
ARG
49
0
Y
1
A
CD
ARG
63
A
CD
ARG
49
0
Y
1
A
NE
ARG
63
A
NE
ARG
49
0
Y
1
A
CZ
ARG
63
A
CZ
ARG
49
0
Y
1
A
NH1
ARG
63
A
NH1
ARG
49
0
Y
1
A
NH2
ARG
63
A
NH2
ARG
49
0
Y
1
A
CB
ARG
150
A
CB
ARG
138
0
Y
1
A
CG
ARG
150
A
CG
ARG
138
0
Y
1
A
CD
ARG
150
A
CD
ARG
138
0
Y
1
A
NE
ARG
150
A
NE
ARG
138
0
Y
1
A
CZ
ARG
150
A
CZ
ARG
138
0
Y
1
A
NH1
ARG
150
A
NH1
ARG
138
0
Y
1
A
NH2
ARG
150
A
NH2
ARG
138
0
Y
1
A
NZ
LYS
243
A
NZ
LYS
233
0
Y
1
A
O
ARG
245
A
O
ARG
235
0
Y
1
A
CB
ARG
245
A
CB
ARG
235
0
Y
1
A
CG
ARG
245
A
CG
ARG
235
0
Y
1
A
CD
ARG
245
A
CD
ARG
235
0
Y
1
A
NE
ARG
245
A
NE
ARG
235
0
Y
1
A
CZ
ARG
245
A
CZ
ARG
235
0
Y
1
A
NH1
ARG
245
A
NH1
ARG
235
0
Y
1
A
NH2
ARG
245
A
NH2
ARG
235
0
Y
1
L
CB
LYS
87
B
CB
LYS
44
0
Y
1
L
CG
LYS
87
B
CG
LYS
44
0
Y
1
L
CD
LYS
87
B
CD
LYS
44
0
Y
1
L
CE
LYS
87
B
CE
LYS
44
0
Y
1
L
NZ
LYS
87
B
NZ
LYS
44
0
Y
1
L
CB
LEU
91
B
CB
LEU
48
0
Y
1
L
CG
LEU
91
B
CG
LEU
48
0
Y
1
L
CD1
LEU
91
B
CD1
LEU
48
0
Y
1
L
CD2
LEU
91
B
CD2
LEU
48
0
Y
1
L
OD1
ASP
92
B
OD1
ASP
49
0
Y
1
L
OD2
ASP
92
B
OD2
ASP
49
0
Y
1
L
CG
HIS
101
B
CG
HIS
58
0
Y
1
L
ND1
HIS
101
B
ND1
HIS
58
0
Y
1
L
CD2
HIS
101
B
CD2
HIS
58
0
Y
1
L
CE1
HIS
101
B
CE1
HIS
58
0
Y
1
L
NE2
HIS
101
B
NE2
HIS
58
0
Y
1
L
OE2
GLU
102
B
OE2
GLU
59
0
Y
1
L
CG
GLU
103
B
CG
GLU
60
0
Y
1
L
CD
GLU
103
B
CD
GLU
60
0
Y
1
L
OE1
GLU
103
B
OE1
GLU
60
0
Y
1
L
OE2
GLU
103
B
OE2
GLU
60
0
Y
1
L
CB
GLN
104
B
CB
GLN
61
0
Y
1
L
CG
GLN
104
B
CG
GLN
61
0
Y
1
L
CD
GLN
104
B
CD
GLN
61
0
Y
1
L
OE1
GLN
104
B
OE1
GLN
61
0
Y
1
L
NE2
GLN
104
B
NE2
GLN
61
0
Y
1
L
CA
ALA
105
B
CA
ALA
62
0
Y
1
L
C
ALA
105
B
C
ALA
62
0
Y
1
L
O
ALA
105
B
O
ALA
62
0
Y
1
L
CB
ALA
105
B
CB
ALA
62
0
Y
1
L
NH2
ARG
113
B
NH2
ARG
70
0
Y
1
L
OD1
ASP
119
B
OD1
ASP
76
0
Y
1
L
OD2
ASP
119
B
OD2
ASP
76
0
Y
1
A
GLY
246
A
GLY
236
1
Y
1
A
LEU
247
A
LEU
237
1
Y
1
A
PRO
248
A
PRO
238
1
Y
1
A
LYS
249
A
LYS
239
1
Y
1
A
ALA
250
A
ALA
240
1
Y
1
A
LYS
251
A
LYS
241
1
Y
1
A
SER
252
A
SER
242
1
Y
1
A
HIS
253
A
HIS
243
1
Y
1
A
ALA
254
A
ALA
244
1
Y
1
A
PRO
255
A
PRO
245
1
Y
1
A
GLU
256
A
GLU
246
1
Y
1
A
VAL
257
A
VAL
247
1
Y
1
A
ILE
258
A
ILE
248
1
Y
1
A
THR
259
A
THR
249
1
Y
1
A
SER
260
A
SER
250
1
Y
1
A
SER
261
A
SER
251
1
Y
1
A
PRO
262
A
PRO
252
1
Y
1
A
LEU
263
A
LEU
253
1
Y
1
A
LYS
264
A
LYS
254
1
Y
1
L
TYR
44
B
TYR
1
1
Y
1
L
LYS
45
B
LYS
2
1
Y
1
L
ASP
46
B
ASP
3
1
Y
1
L
GLY
47
B
GLY
4
1
Y
1
L
ASP
48
B
ASP
5
1
Y
1
L
GLN
49
B
GLN
6
1
Y
1
L
CYS
50
B
CYS
7
1
Y
1
L
GLU
51
B
GLU
8
1
Y
1
L
THR
52
B
THR
9
1
Y
1
L
SER
53
B
SER
10
1
Y
1
L
PRO
54
B
PRO
11
1
Y
1
L
CYS
55
B
CYS
12
1
Y
1
L
GLN
56
B
GLN
13
1
Y
1
L
ASN
57
B
ASN
14
1
Y
1
L
GLN
58
B
GLN
15
1
Y
1
L
GLY
59
B
GLY
16
1
Y
1
L
LYS
60
B
LYS
17
1
Y
1
L
CYS
61
B
CYS
18
1
Y
1
L
LYS
62
B
LYS
19
1
Y
1
L
ASP
63
B
ASP
20
1
Y
1
L
GLY
64
B
GLY
21
1
Y
1
L
LEU
65
B
LEU
22
1
Y
1
L
GLY
66
B
GLY
23
1
Y
1
L
GLU
67
B
GLU
24
1
Y
1
L
TYR
68
B
TYR
25
1
Y
1
L
THR
69
B
THR
26
1
Y
1
L
CYS
70
B
CYS
27
1
Y
1
L
THR
71
B
THR
28
1
Y
1
L
CYS
72
B
CYS
29
1
Y
1
L
LEU
73
B
LEU
30
1
Y
1
L
GLU
74
B
GLU
31
1
Y
1
L
GLY
75
B
GLY
32
1
Y
1
L
PHE
76
B
PHE
33
1
Y
1
L
GLU
77
B
GLU
34
1
Y
1
L
GLY
78
B
GLY
35
1
Y
1
L
LYS
79
B
LYS
36
1
Y
1
L
ASN
80
B
ASN
37
1
Y
1
L
CYS
81
B
CYS
38
1
Y
1
L
GLU
82
B
GLU
39
1
Y
1
L
LEU
83
B
LEU
40
1
Y
1
L
PHE
84
B
PHE
41
1
Y
1
-13.33
2.20
117.20
103.87
A
A
A
CA
C
N
TRP
TRP
ALA
127
127
128
Y
1
A
ALA
56
-15.82
-59.78
1
A
GLU
77
-82.20
33.06
1
A
ASN
92
-44.56
-10.88
1
A
PHE
94
-57.88
103.81
1
A
ASN
117
89.77
10.14
1
A
PRO
124
-78.56
-166.38
1
A
TRP
127
81.87
73.70
1
A
ALA
128
165.80
-70.99
1
A
SER
130
76.66
148.78
1
A
THR
131
66.04
-76.38
1
A
ARG
143
-36.71
130.88
1
A
HIS
145
-156.47
-2.47
1
A
GLU
147
63.98
119.63
1
A
GLN
151
-68.77
-86.27
1
A
SER
152
-160.24
-54.59
1
A
THR
153
69.45
-51.98
1
A
GLN
178
-67.56
3.00
1
A
ASP
189
174.31
160.41
1
A
ASP
205
66.94
-20.01
1
A
SER
214
-102.94
-75.91
1
A
LYS
223
-57.63
107.87
1
A
THR
244
107.51
99.46
1
L
LYS
87
178.32
-168.99
1
L
LEU
88
74.44
98.32
1
L
SER
90
-66.73
-71.59
1
L
LEU
91
-8.60
-65.60
1
L
ASP
92
-163.73
57.24
1
L
GLN
98
-133.26
-108.68
1
L
GLN
104
64.58
-80.87
1
L
VAL
108
61.93
98.97
1
L
LYS
122
-132.13
-44.84
0.261
0.197
0.197
3.0
7087
1
2.0
3.0
0
39
39
0
0
0.009
2.2
1FAX
3.
0.118
1
5.6
data scaling
SAINT
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
SAINT
phasing
X-PLOR
3.1
FACTOR XA, (+)-2-[4-[((S)-1-ACETIMIDOYL-3-PYRRODINYL)OXY]-3-(7-AMIDINO-2-NAPTHYL)PROPIONIC ACID
COAGULATION FACTOR XA INHIBITOR COMPLEX
1
N
N
2
N
N
3
N
N
4
N
N
A
ALA
56
A
ALA
41
HELX_P
A
TYR
60
A
TYR
45
5
1
5
A
ARG
165
A
ARG
153
HELX_P
A
SER
171
A
SER
159
1
2
7
A
VAL
231
A
VAL
221
HELX_P
A
ALA
233
A
ALA
223
5
3
3
A
LEU
235
A
LEU
225
HELX_P
A
LYS
243
A
LYS
233
1
4
9
L
ASN
93
B
ASN
50
HELX_P
L
ASP
95
B
ASP
52
5
5
3
disulf
2.023
A
CYS
22
A
SG
CYS
7
1_555
A
CYS
27
A
SG
CYS
12
1_555
disulf
2.008
A
CYS
42
A
SG
CYS
27
1_555
A
CYS
58
A
SG
CYS
43
1_555
disulf
2.021
A
CYS
122
A
SG
CYS
108
1_555
L
CYS
132
B
SG
CYS
89
1_555
disulf
2.013
A
CYS
168
A
SG
CYS
156
1_555
A
CYS
182
A
SG
CYS
170
1_555
disulf
2.014
A
CYS
191
A
SG
CYS
181
1_555
A
CYS
220
A
SG
CYS
209
1_555
disulf
2.019
L
CYS
89
B
SG
CYS
46
1_555
L
CYS
100
B
SG
CYS
57
1_555
disulf
2.018
L
CYS
96
B
SG
CYS
53
1_555
L
CYS
109
B
SG
CYS
66
1_555
disulf
2.019
L
CYS
111
B
SG
CYS
68
1_555
L
CYS
124
B
SG
CYS
81
1_555
metalc
1.992
A
CA
1
C
CA
CA
1_555
A
ASN
72
A
O
ASN
58
1_555
metalc
2.278
A
CA
1
C
CA
CA
1_555
A
ALA
75
A
O
ALA
61
1_555
metalc
2.119
A
CA
1
C
CA
CA
1_555
A
GLU
80
A
OE2
GLU
66
1_555
metalc
2.962
A
ASP
70
A
OD1
ASP
56
1_555
A
CA
1
C
CA
CA
1_555
metalc
2.654
A
GLU
80
A
OE1
GLU
66
1_555
A
CA
1
C
CA
CA
1_555
COAGULATION FACTOR
GLYCOPROTEIN, HYDROLASE, SERINE PROTEASE, PLASMA, BLOOD COAGULATION FACTOR, GAMMA-CARBOXYGLUTAMIC ACID, CALCIUM-BINDING, COAGULATION FACTOR
FA10_HUMAN
UNP
1
235
P00742
FA10_HUMAN
UNP
2
84
P00742
235
481
1FAX
16
264
P00742
A
1
1
254
84
179
1FAX
44
139
P00742
L
2
1
96
1
GLU
CONFLICT
ALA
74
1FAX
A
P00742
UNP
294
60
1
GLN
CONFLICT
ALA
75
1FAX
A
P00742
UNP
295
61
2
ASN
CONFLICT
ALA
105
1FAX
L
P00742
UNP
145
62
4
3
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
81
A
ALA
67
A
GLU
84
A
GLU
70
A
PHE
64
A
PHE
50
A
VAL
68
A
VAL
54
A
GLN
30
A
GLN
15
A
ASN
35
A
ASN
20
A
GLY
40
A
GLY
25
A
THR
45
A
THR
30
A
TYR
51
A
TYR
36
A
THR
54
A
THR
39
A
ALA
104
A
ALA
90
A
LEU
108
A
LEU
94
A
VAL
85
A
VAL
71
A
LYS
90
A
LYS
76
A
THR
135
A
THR
124
A
GLY
140
A
GLY
129
A
LYS
156
A
LYS
144
A
PRO
161
A
PRO
149
A
MET
180
A
MET
168
A
ALA
183
A
ALA
171
A
GLY
226
A
GLY
216
A
LYS
230
A
LYS
220
A
THR
206
A
THR
196
A
GLY
216
A
GLY
206
A
PRO
198
A
PRO
188
A
PHE
203
A
PHE
193
L
TYR
115
B
TYR
72
L
LEU
117
B
LEU
74
L
CYS
124
B
CYS
81
L
PRO
126
B
PRO
83
CATALYTIC CENTER OF SERINE PROTEASE.
Unknown
3
BINDING SITE FOR RESIDUE CA A 1
Software
5
BINDING SITE FOR RESIDUE DX9 A 265
Software
9
A
HIS
57
A
HIS
42
3
1_555
A
ASP
102
A
ASP
88
3
1_555
A
SER
195
A
SER
185
3
1_555
A
ASP
70
A
ASP
56
5
1_555
A
ASN
72
A
ASN
58
5
1_555
A
ALA
75
A
ALA
61
5
1_555
A
GLU
77
A
GLU
63
5
1_555
A
GLU
80
A
GLU
66
5
1_555
A
GLU
97
A
GLU
83
9
1_555
A
ASP
189
A
ASP
179
9
1_555
A
ALA
190
A
ALA
180
9
1_555
A
CYS
191
A
CYS
181
9
1_555
A
GLN
192
A
GLN
182
9
1_555
A
TRP
215
A
TRP
205
9
1_555
A
GLY
216
A
GLY
206
9
1_555
A
GLY
218
A
GLY
208
9
1_555
A
GLY
226
A
GLY
216
9
1_555
19
P 21 21 21