0.011993
0.000000
0.000000
0.000000
0.011993
0.000000
0.000000
0.000000
0.025961
0.00000
0.00000
0.00000
Ferguson, K.M.
Kavran, J.M.
Sankaran, V.G.
Fournier, E.
Isakoff, S.J.
Skolnik, E.Y.
Lemmon, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
83.380
83.380
38.520
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Mol.Cell
MOCEFL
2168
1097-2765
6
373
384
10.1016/S1097-2765(00)00037-X
10983984
Structural basis for discrimination of 3-phosphoinositides by pleckstrin homology domains.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-02-10
BRANDEIS - B4
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
X25
NSLS
1.0
SYNCHROTRON
NSLS BEAMLINE X25
14805.023
DUAL ADAPTOR OF PHOSPHOTYROSINE AND 3-PHOSPHOINOSITIDES
PLECKSTRIN HOMOLOGY DOMAIN
1
man
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
18.015
water
28
nat
water
DAPP1, PHISH, BAM32
no
no
MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC
FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR
MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC
FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PET11A
1
2.26
40.8
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 3450, Ethylene Glycol, Ammonium Phosphate, Sodium Phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
1
0
2000-07-20
1
1
2008-04-27
1
2
2011-07-13
STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM
DAPP1/PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
TETRAKISPHOSPHATE
RCSB
Y
RCSB
2000-07-14
REL
PO4
PHOSPHATE ION
HOH
water
PO4
1
2
PO4
PO4
31
A
PO4
2
2
PO4
PO4
32
A
TIP
1
3
HOH
HOH
1
A
TIP
2
3
HOH
HOH
2
A
TIP
3
3
HOH
HOH
3
A
TIP
4
3
HOH
HOH
4
A
TIP
5
3
HOH
HOH
5
A
TIP
6
3
HOH
HOH
6
A
TIP
7
3
HOH
HOH
7
A
TIP
8
3
HOH
HOH
8
A
TIP
9
3
HOH
HOH
9
A
TIP
10
3
HOH
HOH
10
A
TIP
11
3
HOH
HOH
11
A
TIP
12
3
HOH
HOH
12
A
TIP
13
3
HOH
HOH
13
A
TIP
14
3
HOH
HOH
14
A
TIP
15
3
HOH
HOH
15
A
TIP
16
3
HOH
HOH
16
A
TIP
17
3
HOH
HOH
17
A
TIP
18
3
HOH
HOH
18
A
TIP
19
3
HOH
HOH
19
A
TIP
20
3
HOH
HOH
20
A
TIP
21
3
HOH
HOH
21
A
TIP
22
3
HOH
HOH
22
A
TIP
23
3
HOH
HOH
23
A
TIP
24
3
HOH
HOH
24
A
TIP
25
3
HOH
HOH
25
A
TIP
26
3
HOH
HOH
26
A
TIP
27
3
HOH
HOH
27
A
TIP
28
3
HOH
HOH
28
A
n
1
148
A
n
2
149
A
n
3
150
A
n
4
151
A
n
5
152
A
n
6
153
A
n
7
154
A
n
8
155
A
n
9
156
A
LEU
157
n
10
LEU
157
A
VAL
158
n
11
VAL
158
A
PRO
159
n
12
PRO
159
A
THR
160
n
13
THR
160
A
ALA
161
n
14
ALA
161
A
PRO
162
n
15
PRO
162
A
SER
163
n
16
SER
163
A
LEU
164
n
17
LEU
164
A
GLY
165
n
18
GLY
165
A
THR
166
n
19
THR
166
A
LYS
167
n
20
LYS
167
A
GLU
168
n
21
GLU
168
A
GLY
169
n
22
GLY
169
A
TYR
170
n
23
TYR
170
A
LEU
171
n
24
LEU
171
A
THR
172
n
25
THR
172
A
LYS
173
n
26
LYS
173
A
GLN
174
n
27
GLN
174
A
GLY
175
n
28
GLY
175
A
GLY
176
n
29
GLY
176
A
LEU
177
n
30
LEU
177
A
VAL
178
n
31
VAL
178
A
ALA
179
n
32
LYS
179
A
THR
180
n
33
THR
180
A
TRP
181
n
34
TRP
181
A
LYS
182
n
35
LYS
182
A
THR
183
n
36
THR
183
A
ARG
184
n
37
ARG
184
A
TRP
185
n
38
TRP
185
A
PHE
186
n
39
PHE
186
A
THR
187
n
40
THR
187
A
LEU
188
n
41
LEU
188
A
HIS
189
n
42
HIS
189
A
ARG
190
n
43
ARG
190
A
ASN
191
n
44
ASN
191
A
GLU
192
n
45
GLU
192
A
LEU
193
n
46
LEU
193
A
LYS
194
n
47
LYS
194
A
TYR
195
n
48
TYR
195
A
PHE
196
n
49
PHE
196
A
LYS
197
n
50
LYS
197
A
ASP
198
n
51
ASP
198
A
GLN
199
n
52
GLN
199
A
MET
200
n
53
MET
200
A
SER
201
n
54
SER
201
A
PRO
202
n
55
PRO
202
A
GLU
203
n
56
GLU
203
A
PRO
204
n
57
PRO
204
A
ILE
205
n
58
ILE
205
A
ARG
206
n
59
ARG
206
A
ILE
207
n
60
ILE
207
A
LEU
208
n
61
LEU
208
A
ASP
209
n
62
ASP
209
A
LEU
210
n
63
LEU
210
A
THR
211
n
64
THR
211
A
GLU
212
n
65
GLU
212
A
CYS
213
n
66
CYS
213
A
SER
214
n
67
SER
214
A
ALA
215
n
68
ALA
215
A
VAL
216
n
69
VAL
216
A
GLN
217
n
70
GLN
217
A
PHE
218
n
71
PHE
218
A
ASP
219
n
72
ASP
219
A
TYR
220
n
73
TYR
220
A
SER
221
n
74
SER
221
A
GLN
222
n
75
GLN
222
A
GLU
223
n
76
GLU
223
A
ARG
224
n
77
ARG
224
A
VAL
225
n
78
VAL
225
A
ASN
226
n
79
ASN
226
A
CYS
227
n
80
CYS
227
A
PHE
228
n
81
PHE
228
A
CYS
229
n
82
CYS
229
A
LEU
230
n
83
LEU
230
A
VAL
231
n
84
VAL
231
A
PHE
232
n
85
PHE
232
A
PRO
233
n
86
PRO
233
A
PHE
234
n
87
PHE
234
A
ARG
235
n
88
ARG
235
A
THR
236
n
89
THR
236
A
PHE
237
n
90
PHE
237
A
TYR
238
n
91
TYR
238
A
LEU
239
n
92
LEU
239
A
CYS
240
n
93
CYS
240
A
ALA
241
n
94
ALA
241
A
LYS
242
n
95
LYS
242
A
THR
243
n
96
THR
243
A
GLY
244
n
97
GLY
244
A
VAL
245
n
98
VAL
245
A
GLU
246
n
99
GLU
246
A
ALA
247
n
100
ALA
247
A
ASP
248
n
101
ASP
248
A
GLU
249
n
102
GLU
249
A
TRP
250
n
103
TRP
250
A
ILE
251
n
104
ILE
251
A
LYS
252
n
105
LYS
252
A
ILE
253
n
106
ILE
253
A
LEU
254
n
107
LEU
254
A
ARG
255
n
108
ARG
255
A
TRP
256
n
109
TRP
256
A
LYS
257
n
110
LYS
257
A
LEU
258
n
111
LEU
258
A
SER
259
n
112
SER
259
A
GLN
260
n
113
GLN
260
A
ILE
261
n
114
ILE
261
A
ARG
262
n
115
ARG
262
A
n
116
263
A
n
117
264
A
n
118
265
A
n
119
266
A
n
120
267
A
n
121
268
A
n
122
269
A
n
123
270
A
n
124
271
A
n
125
272
A
n
126
273
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
4
tetrameric
6780
-84
23670
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-y,x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_555
y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
208
A
N
LEU
61
A
O
LEU
193
A
O
LEU
46
A
N
PHE
196
A
N
PHE
49
A
O
TRP
185
A
O
TRP
38
A
N
LEU
188
A
N
LEU
41
A
O
LYS
167
A
O
LYS
20
A
N
GLN
174
A
N
GLN
27
A
O
TYR
238
A
O
TYR
91
A
N
ALA
241
A
N
ALA
94
A
O
ASN
226
A
O
ASN
79
A
N
VAL
231
A
N
VAL
84
A
O
ALA
215
A
O
ALA
68
1
A
CG
LYS
179
A
CG
LYS
32
1
Y
1
A
CD
LYS
179
A
CD
LYS
32
1
Y
1
A
CE
LYS
179
A
CE
LYS
32
1
Y
1
A
NZ
LYS
179
A
NZ
LYS
32
1
Y
1
A
MET
148
A
MET
1
1
Y
1
A
GLN
149
A
GLN
2
1
Y
1
A
THR
150
A
THR
3
1
Y
1
A
GLY
151
A
GLY
4
1
Y
1
A
ARG
152
A
ARG
5
1
Y
1
A
THR
153
A
THR
6
1
Y
1
A
GLU
154
A
GLU
7
1
Y
1
A
ASP
155
A
ASP
8
1
Y
1
A
ASP
156
A
ASP
9
1
Y
1
A
LYS
263
A
LYS
116
1
Y
1
A
GLN
264
A
GLN
117
1
Y
1
A
LEU
265
A
LEU
118
1
Y
1
A
ASN
266
A
ASN
119
1
Y
1
A
GLN
267
A
GLN
120
1
Y
1
A
GLY
268
A
GLY
121
1
Y
1
A
GLU
269
A
GLU
122
1
Y
1
A
GLY
270
A
GLY
123
1
Y
1
A
THR
271
A
THR
124
1
Y
1
A
ILE
272
A
ILE
125
1
Y
1
A
ARG
273
A
ARG
126
1
Y
1
A
THR
160
-150.08
-94.35
1
A
SER
163
-85.44
35.05
1
A
LEU
164
61.20
113.63
1
A
LYS
179
-74.79
42.49
1
A
ARG
190
62.58
-122.03
1
A
ARG
235
-177.82
142.63
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
43.7
0.21
0.00
0.00
0.21
0.00
-0.42
0.272
0.010
0.223
0.223
2.40
35
740
4973
4973
14.9
93.9
RANDOM
708822.74
0.00000
1
RESTRAINED
THROUGHOUT
0.0
0.0
MIR
Engh & Huber
FLAT MODEL
42.75
0.378
0.38
0.30
5.00
0.32
0.27
2.40
35
28
917
10
0
879
0.007
1.24
24.5
0.68
2.28
1.50
3.44
2.00
3.86
2.00
5.01
2.50
0.321
0.032
0.271
2.55
102
615
6
14.2
84.0
43.0
2.4
50.0
1FB8
4973
4973
0.0
0.0
0.05
0.04
1
21.5
3.5
94.0
0.14
2.4
2.55
5.200
717
0.14
1
3
84
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
refinement
CNS
0.9
DUAL ADAPTOR OF PHOSPHOTYROSINE AND 3-PHOSPHOINOSITIDES
STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM DAPP1/PHISH
1
N
N
2
N
N
2
N
N
3
N
N
The biological assembly is a monomer
A
THR
211
A
THR
64
HELX_P
A
CYS
213
A
CYS
66
5
1
3
A
THR
243
A
THR
96
HELX_P
A
ARG
262
A
ARG
115
1
2
20
disulf
2.033
A
CYS
227
A
SG
CYS
80
1_555
A
CYS
240
A
SG
CYS
93
1_555
SIGNALING PROTEIN
PLECKSTRIN, 3-PHOSPHOINOSITIDES, INOSITOL TETRAKISPHOSPHATE SIGNAL TRANSDUCTION PROTEIN, ADAPTOR PROTEIN, SIGNALING PROTEIN
DAPP1_HUMAN
UNP
1
148
Q9UN19
MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC
FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR
148
273
1FB8
148
273
Q9UN19
A
1
1
126
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
206
A
ARG
59
A
ASP
209
A
ASP
62
A
GLU
192
A
GLU
45
A
PHE
196
A
PHE
49
A
TRP
181
A
TRP
34
A
HIS
189
A
HIS
42
A
LYS
167
A
LYS
20
A
GLN
174
A
GLN
27
A
ARG
235
A
ARG
88
A
ALA
241
A
ALA
94
A
ASN
226
A
ASN
79
A
PHE
232
A
PHE
85
A
ALA
215
A
ALA
68
A
PHE
218
A
PHE
71
BINDING SITE FOR RESIDUE PO4 A 31
Software
7
BINDING SITE FOR RESIDUE PO4 A 32
Software
9
A
PO4
32
C
PO4
7
1_555
A
LYS
173
A
LYS
26
7
1_555
A
LYS
182
A
LYS
35
7
1_555
A
THR
183
A
THR
36
7
3_555
A
ARG
184
A
ARG
37
7
1_555
A
ILE
205
A
ILE
58
7
1_555
A
LYS
242
A
LYS
95
7
3_555
A
HOH
19
D
HOH
9
1_555
A
PO4
31
B
PO4
9
1_555
A
LYS
173
A
LYS
26
9
1_555
A
GLY
175
A
GLY
28
9
1_555
A
GLY
176
A
GLY
29
9
1_555
A
TYR
195
A
TYR
48
9
1_555
A
ARG
206
A
ARG
59
9
1_555
A
ARG
235
A
ARG
88
9
1_555
A
LYS
242
A
LYS
95
9
3_555
79
I 4