0.011993 0.000000 0.000000 0.000000 0.011993 0.000000 0.000000 0.000000 0.025961 0.00000 0.00000 0.00000 Ferguson, K.M. Kavran, J.M. Sankaran, V.G. Fournier, E. Isakoff, S.J. Skolnik, E.Y. Lemmon, M.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 83.380 83.380 38.520 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Mol.Cell MOCEFL 2168 1097-2765 6 373 384 10.1016/S1097-2765(00)00037-X 10983984 Structural basis for discrimination of 3-phosphoinositides by pleckstrin homology domains. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-02-10 BRANDEIS - B4 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 X25 NSLS 1.0 SYNCHROTRON NSLS BEAMLINE X25 14805.023 DUAL ADAPTOR OF PHOSPHOTYROSINE AND 3-PHOSPHOINOSITIDES PLECKSTRIN HOMOLOGY DOMAIN 1 man polymer 94.971 PHOSPHATE ION 2 syn non-polymer 18.015 water 28 nat water DAPP1, PHISH, BAM32 no no MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli PLASMID PET11A 1 2.26 40.8 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 3450, Ethylene Glycol, Ammonium Phosphate, Sodium Phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 repository Initial release Version format compliance Derived calculations Version format compliance 1 0 2000-07-20 1 1 2008-04-27 1 2 2011-07-13 STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM DAPP1/PHISH IN COMPLEX WITH INOSITOL 1,3,4,5- TETRAKISPHOSPHATE RCSB Y RCSB 2000-07-14 REL PO4 PHOSPHATE ION HOH water PO4 1 2 PO4 PO4 31 A PO4 2 2 PO4 PO4 32 A TIP 1 3 HOH HOH 1 A TIP 2 3 HOH HOH 2 A TIP 3 3 HOH HOH 3 A TIP 4 3 HOH HOH 4 A TIP 5 3 HOH HOH 5 A TIP 6 3 HOH HOH 6 A TIP 7 3 HOH HOH 7 A TIP 8 3 HOH HOH 8 A TIP 9 3 HOH HOH 9 A TIP 10 3 HOH HOH 10 A TIP 11 3 HOH HOH 11 A TIP 12 3 HOH HOH 12 A TIP 13 3 HOH HOH 13 A TIP 14 3 HOH HOH 14 A TIP 15 3 HOH HOH 15 A TIP 16 3 HOH HOH 16 A TIP 17 3 HOH HOH 17 A TIP 18 3 HOH HOH 18 A TIP 19 3 HOH HOH 19 A TIP 20 3 HOH HOH 20 A TIP 21 3 HOH HOH 21 A TIP 22 3 HOH HOH 22 A TIP 23 3 HOH HOH 23 A TIP 24 3 HOH HOH 24 A TIP 25 3 HOH HOH 25 A TIP 26 3 HOH HOH 26 A TIP 27 3 HOH HOH 27 A TIP 28 3 HOH HOH 28 A n 1 148 A n 2 149 A n 3 150 A n 4 151 A n 5 152 A n 6 153 A n 7 154 A n 8 155 A n 9 156 A LEU 157 n 10 LEU 157 A VAL 158 n 11 VAL 158 A PRO 159 n 12 PRO 159 A THR 160 n 13 THR 160 A ALA 161 n 14 ALA 161 A PRO 162 n 15 PRO 162 A SER 163 n 16 SER 163 A LEU 164 n 17 LEU 164 A GLY 165 n 18 GLY 165 A THR 166 n 19 THR 166 A LYS 167 n 20 LYS 167 A GLU 168 n 21 GLU 168 A GLY 169 n 22 GLY 169 A TYR 170 n 23 TYR 170 A LEU 171 n 24 LEU 171 A THR 172 n 25 THR 172 A LYS 173 n 26 LYS 173 A GLN 174 n 27 GLN 174 A GLY 175 n 28 GLY 175 A GLY 176 n 29 GLY 176 A LEU 177 n 30 LEU 177 A VAL 178 n 31 VAL 178 A ALA 179 n 32 LYS 179 A THR 180 n 33 THR 180 A TRP 181 n 34 TRP 181 A LYS 182 n 35 LYS 182 A THR 183 n 36 THR 183 A ARG 184 n 37 ARG 184 A TRP 185 n 38 TRP 185 A PHE 186 n 39 PHE 186 A THR 187 n 40 THR 187 A LEU 188 n 41 LEU 188 A HIS 189 n 42 HIS 189 A ARG 190 n 43 ARG 190 A ASN 191 n 44 ASN 191 A GLU 192 n 45 GLU 192 A LEU 193 n 46 LEU 193 A LYS 194 n 47 LYS 194 A TYR 195 n 48 TYR 195 A PHE 196 n 49 PHE 196 A LYS 197 n 50 LYS 197 A ASP 198 n 51 ASP 198 A GLN 199 n 52 GLN 199 A MET 200 n 53 MET 200 A SER 201 n 54 SER 201 A PRO 202 n 55 PRO 202 A GLU 203 n 56 GLU 203 A PRO 204 n 57 PRO 204 A ILE 205 n 58 ILE 205 A ARG 206 n 59 ARG 206 A ILE 207 n 60 ILE 207 A LEU 208 n 61 LEU 208 A ASP 209 n 62 ASP 209 A LEU 210 n 63 LEU 210 A THR 211 n 64 THR 211 A GLU 212 n 65 GLU 212 A CYS 213 n 66 CYS 213 A SER 214 n 67 SER 214 A ALA 215 n 68 ALA 215 A VAL 216 n 69 VAL 216 A GLN 217 n 70 GLN 217 A PHE 218 n 71 PHE 218 A ASP 219 n 72 ASP 219 A TYR 220 n 73 TYR 220 A SER 221 n 74 SER 221 A GLN 222 n 75 GLN 222 A GLU 223 n 76 GLU 223 A ARG 224 n 77 ARG 224 A VAL 225 n 78 VAL 225 A ASN 226 n 79 ASN 226 A CYS 227 n 80 CYS 227 A PHE 228 n 81 PHE 228 A CYS 229 n 82 CYS 229 A LEU 230 n 83 LEU 230 A VAL 231 n 84 VAL 231 A PHE 232 n 85 PHE 232 A PRO 233 n 86 PRO 233 A PHE 234 n 87 PHE 234 A ARG 235 n 88 ARG 235 A THR 236 n 89 THR 236 A PHE 237 n 90 PHE 237 A TYR 238 n 91 TYR 238 A LEU 239 n 92 LEU 239 A CYS 240 n 93 CYS 240 A ALA 241 n 94 ALA 241 A LYS 242 n 95 LYS 242 A THR 243 n 96 THR 243 A GLY 244 n 97 GLY 244 A VAL 245 n 98 VAL 245 A GLU 246 n 99 GLU 246 A ALA 247 n 100 ALA 247 A ASP 248 n 101 ASP 248 A GLU 249 n 102 GLU 249 A TRP 250 n 103 TRP 250 A ILE 251 n 104 ILE 251 A LYS 252 n 105 LYS 252 A ILE 253 n 106 ILE 253 A LEU 254 n 107 LEU 254 A ARG 255 n 108 ARG 255 A TRP 256 n 109 TRP 256 A LYS 257 n 110 LYS 257 A LEU 258 n 111 LEU 258 A SER 259 n 112 SER 259 A GLN 260 n 113 GLN 260 A ILE 261 n 114 ILE 261 A ARG 262 n 115 ARG 262 A n 116 263 A n 117 264 A n 118 265 A n 119 266 A n 120 267 A n 121 268 A n 122 269 A n 123 270 A n 124 271 A n 125 272 A n 126 273 A author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 4 tetrameric 6780 -84 23670 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -y,x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_555 y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 208 A N LEU 61 A O LEU 193 A O LEU 46 A N PHE 196 A N PHE 49 A O TRP 185 A O TRP 38 A N LEU 188 A N LEU 41 A O LYS 167 A O LYS 20 A N GLN 174 A N GLN 27 A O TYR 238 A O TYR 91 A N ALA 241 A N ALA 94 A O ASN 226 A O ASN 79 A N VAL 231 A N VAL 84 A O ALA 215 A O ALA 68 1 A CG LYS 179 A CG LYS 32 1 Y 1 A CD LYS 179 A CD LYS 32 1 Y 1 A CE LYS 179 A CE LYS 32 1 Y 1 A NZ LYS 179 A NZ LYS 32 1 Y 1 A MET 148 A MET 1 1 Y 1 A GLN 149 A GLN 2 1 Y 1 A THR 150 A THR 3 1 Y 1 A GLY 151 A GLY 4 1 Y 1 A ARG 152 A ARG 5 1 Y 1 A THR 153 A THR 6 1 Y 1 A GLU 154 A GLU 7 1 Y 1 A ASP 155 A ASP 8 1 Y 1 A ASP 156 A ASP 9 1 Y 1 A LYS 263 A LYS 116 1 Y 1 A GLN 264 A GLN 117 1 Y 1 A LEU 265 A LEU 118 1 Y 1 A ASN 266 A ASN 119 1 Y 1 A GLN 267 A GLN 120 1 Y 1 A GLY 268 A GLY 121 1 Y 1 A GLU 269 A GLU 122 1 Y 1 A GLY 270 A GLY 123 1 Y 1 A THR 271 A THR 124 1 Y 1 A ILE 272 A ILE 125 1 Y 1 A ARG 273 A ARG 126 1 Y 1 A THR 160 -150.08 -94.35 1 A SER 163 -85.44 35.05 1 A LEU 164 61.20 113.63 1 A LYS 179 -74.79 42.49 1 A ARG 190 62.58 -122.03 1 A ARG 235 -177.82 142.63 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 43.7 0.21 0.00 0.00 0.21 0.00 -0.42 0.272 0.010 0.223 0.223 2.40 35 740 4973 4973 14.9 93.9 RANDOM 708822.74 0.00000 1 RESTRAINED THROUGHOUT 0.0 0.0 MIR Engh & Huber FLAT MODEL 42.75 0.378 0.38 0.30 5.00 0.32 0.27 2.40 35 28 917 10 0 879 0.007 1.24 24.5 0.68 2.28 1.50 3.44 2.00 3.86 2.00 5.01 2.50 0.321 0.032 0.271 2.55 102 615 6 14.2 84.0 43.0 2.4 50.0 1FB8 4973 4973 0.0 0.0 0.05 0.04 1 21.5 3.5 94.0 0.14 2.4 2.55 5.200 717 0.14 1 3 84 data reduction DENZO data scaling SCALEPACK phasing MLPHARE refinement CNS 0.9 DUAL ADAPTOR OF PHOSPHOTYROSINE AND 3-PHOSPHOINOSITIDES STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM DAPP1/PHISH 1 N N 2 N N 2 N N 3 N N The biological assembly is a monomer A THR 211 A THR 64 HELX_P A CYS 213 A CYS 66 5 1 3 A THR 243 A THR 96 HELX_P A ARG 262 A ARG 115 1 2 20 disulf 2.033 A CYS 227 A SG CYS 80 1_555 A CYS 240 A SG CYS 93 1_555 SIGNALING PROTEIN PLECKSTRIN, 3-PHOSPHOINOSITIDES, INOSITOL TETRAKISPHOSPHATE SIGNAL TRANSDUCTION PROTEIN, ADAPTOR PROTEIN, SIGNALING PROTEIN DAPP1_HUMAN UNP 1 148 Q9UN19 MQTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC FCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTIR 148 273 1FB8 148 273 Q9UN19 A 1 1 126 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 206 A ARG 59 A ASP 209 A ASP 62 A GLU 192 A GLU 45 A PHE 196 A PHE 49 A TRP 181 A TRP 34 A HIS 189 A HIS 42 A LYS 167 A LYS 20 A GLN 174 A GLN 27 A ARG 235 A ARG 88 A ALA 241 A ALA 94 A ASN 226 A ASN 79 A PHE 232 A PHE 85 A ALA 215 A ALA 68 A PHE 218 A PHE 71 BINDING SITE FOR RESIDUE PO4 A 31 Software 7 BINDING SITE FOR RESIDUE PO4 A 32 Software 9 A PO4 32 C PO4 7 1_555 A LYS 173 A LYS 26 7 1_555 A LYS 182 A LYS 35 7 1_555 A THR 183 A THR 36 7 3_555 A ARG 184 A ARG 37 7 1_555 A ILE 205 A ILE 58 7 1_555 A LYS 242 A LYS 95 7 3_555 A HOH 19 D HOH 9 1_555 A PO4 31 B PO4 9 1_555 A LYS 173 A LYS 26 9 1_555 A GLY 175 A GLY 28 9 1_555 A GLY 176 A GLY 29 9 1_555 A TYR 195 A TYR 48 9 1_555 A ARG 206 A ARG 59 9 1_555 A ARG 235 A ARG 88 9 1_555 A LYS 242 A LYS 95 9 3_555 79 I 4